Prupe.1G577300_v2.0.a1

23 kDa jasmonate-induced protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0001765
Physical Location & Seq
Forward (+)
46989398 .. 46990386
989 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G577300.1

Sequence Viewer

Length: 552 bp
ATGGAAAACGCCGAGGGGAAGGACATCAATGCCCGAAATTATGTGGAGAATTTGAAGAAGCAATCTGGTTATGGAGTTTCCACACTTTGCCTTGTTTACAATGCCACTGGGGACACAATAAGACTTGTTGCTAGTAAGGATTGGTATGGCAACATTGGGCGCGCCCCATACCCAACACAGATTGCAAATGGGCAGTGGGGTGCCTTTTTGCATGTCATCAAAACCAGTGGTATGGCTACTGGTGGATCGGTTGCGGCTGTTGCGTATCGCGGTAAGAACAACAATGGTAATAACTGTGACTGGCTGCTGGGGTGGAGGAACCCGTGGAATGGACCACTTTCCACTAGTACTAACAAGGTCTATACTGAGATCCGCGAAGCTCGCCACTATGAGCCGGCCGGAGTTTGGCCCGGAGTCTATAATAGTTTGGTTGGCTCTGGCGTGTGTAGCTCTGGCACTTGGAATGGATGCTTCTCAACTATATCATCTGGCTGTTCCATAACAAAACTTCATGAGTCAACTTTAATTGTAACCATGTTGTATTTTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

184

Amino Acids

19.82

Weight (kDa)

8.8

Isoelectric Point (pI)

18.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 200
AccII CGCG 3 cut(s) 162, 270, 375
AciI CCGC 3 cut(s) 254, 270, 373
AclWI GGATC 2 cut(s) 253, 364
AcoI YGGCCR 1 cut(s) 396
AcsI RAATTY 1 cut(s) 49
AfaI GTAC 1 cut(s) 349
AfiI CCNNNNNNNGG 2 cut(s) 329, 405
AgsI TTSAA 1 cut(s) 55
AhlI ACTAGT 1 cut(s) 344
AluBI AGCT 2 cut(s) 380, 450
AluI AGCT 2 cut(s) 380, 450
AlwI GGATC 2 cut(s) 253, 364
AoxI GGCC 2 cut(s) 396, 407
ApeKI GCWGC 1 cut(s) 304
ApoI RAATTY 1 cut(s) 49
AscI GGCGCGCC 1 cut(s) 160
AspLEI GCGC 2 cut(s) 162, 164
AspS9I GGNCC 2 cut(s) 332, 408
AsuC2I CCSGG 1 cut(s) 411
AvaII GGWCC 1 cut(s) 332
BanI GGYRCC 1 cut(s) 200
BbvI GCAGC 1 cut(s) 291
BcnI CCSGG 1 cut(s) 411
BcuI ACTAGT 1 cut(s) 344
BfaI CTAG 2 cut(s) 132, 345
BisI GCNGC 2 cut(s) 255, 305
BlsI GCNGC 2 cut(s) 256, 306
BmcAI AGTACT 1 cut(s) 349
Bme1390I CCNGG 1 cut(s) 411
Bme18I GGWCC 1 cut(s) 332
BmgT120I GGNCC 2 cut(s) 332, 408
BmiI GGNNCC 2 cut(s) 202, 320
BmrFI CCNGG 1 cut(s) 411
BmrI ACTGGG 1 cut(s) 117
BmsI GCATC 1 cut(s) 458
BmuI ACTGGG 1 cut(s) 117
BpuMI CCSGG 1 cut(s) 411
BsaJI CCNNGG 2 cut(s) 12, 323
Bsc4I CCNNNNNNNGG 2 cut(s) 329, 405
Bse118I RCCGGY 1 cut(s) 394
Bse1I ACTGG 4 cut(s) 112, 225, 244, 305
BseDI CCNNGG 2 cut(s) 12, 323
BseGI GGATG 1 cut(s) 473
BseLI CCNNNNNNNGG 2 cut(s) 329, 405
BseMII CTCAG 1 cut(s) 357
BseNI ACTGG 4 cut(s) 112, 225, 244, 305
BsePI GCGCGC 1 cut(s) 160
BseX3I CGGCCG 1 cut(s) 396
BseXI GCAGC 1 cut(s) 291
BseYI CCCAGC 1 cut(s) 307
Bsh1236I CGCG 3 cut(s) 162, 270, 375
Bsh1285I CGRYCG 1 cut(s) 399
BshFI GGCC 2 cut(s) 398, 409
BshNI GGYRCC 1 cut(s) 200
BsiEI CGRYCG 1 cut(s) 399
BsiSI CCGG 3 cut(s) 395, 399, 411
BslFI GGGAC 1 cut(s) 125
BslI CCNNNNNNNGG 2 cut(s) 329, 405
BsmFI GGGAC 1 cut(s) 125
BsnI GGCC 2 cut(s) 398, 409
Bsp143I GATC 2 cut(s) 245, 369
BspACI CCGC 3 cut(s) 254, 270, 373
BspANI GGCC 2 cut(s) 398, 409
BspCNI CTCAG 1 cut(s) 358
BspFNI CGCG 3 cut(s) 162, 270, 375
BspHI TCATGA 1 cut(s) 511
BspLI GGNNCC 2 cut(s) 202, 320
BspPI GGATC 2 cut(s) 253, 364
BspT107I GGYRCC 1 cut(s) 200
BsrFI RCCGGY 1 cut(s) 394
BsrI ACTGG 4 cut(s) 112, 225, 244, 305
BssAI RCCGGY 1 cut(s) 394
BssECI CCNNGG 2 cut(s) 12, 323
BssHII GCGCGC 1 cut(s) 160
BssMI GATC 2 cut(s) 245, 369
Bst4CI ACNGT 1 cut(s) 296
BstC8I GCNNGC 3 cut(s) 162, 382, 396
BstDEI CTNAG 1 cut(s) 366
BstDSI CCRYGG 1 cut(s) 323
BstF5I GGATG 1 cut(s) 473
BstFNI CGCG 3 cut(s) 162, 270, 375
BstHHI GCGC 2 cut(s) 162, 164
BstKTI GATC 2 cut(s) 248, 372
BstMBI GATC 2 cut(s) 245, 369
BstMCI CGRYCG 1 cut(s) 399
BstMWI GCNNNNNNNGC 3 cut(s) 260, 381, 447
BstNSI RCATGY 1 cut(s) 215
BstSCI CCNGG 1 cut(s) 409
BstUI CGCG 3 cut(s) 162, 270, 375
BstV1I GCAGC 1 cut(s) 291
BstX2I RGATCY 1 cut(s) 369
BstXI CCANNNNNNTGG 1 cut(s) 232
BstYI RGATCY 1 cut(s) 369
BstZI CGGCCG 1 cut(s) 396
BsuRI GGCC 2 cut(s) 398, 409
BtgI CCRYGG 1 cut(s) 323
BtsCI GGATG 1 cut(s) 473
BtsI GCAGTG 1 cut(s) 200
BtsIMutI CAGTG 3 cut(s) 105, 200, 232
Cac8I GCNNGC 3 cut(s) 162, 382, 396
CciI TCATGA 1 cut(s) 511
CfoI GCGC 2 cut(s) 162, 164
Cfr10I RCCGGY 1 cut(s) 394
Cfr13I GGNCC 2 cut(s) 332, 408
Csp6I GTAC 1 cut(s) 348
CspCI CAANNNNNGTGG 2 cut(s) 208, 243
CviAII CATG 3 cut(s) 212, 512, 535
CviQI GTAC 1 cut(s) 348
DdeI CTNAG 1 cut(s) 366
DpnI GATC 2 cut(s) 247, 371
DpnII GATC 2 cut(s) 245, 369
EaeI YGGCCR 1 cut(s) 396
EagI CGGCCG 1 cut(s) 396
EclXI CGGCCG 1 cut(s) 396
Eco47I GGWCC 1 cut(s) 332
Eco52I CGGCCG 1 cut(s) 396
FaeI CATG 3 cut(s) 215, 515, 538
FaqI GGGAC 1 cut(s) 125
FatI CATG 3 cut(s) 211, 511, 534
Fnu4HI GCNGC 2 cut(s) 255, 305
FokI GGATG 1 cut(s) 480
Fsp4HI GCNGC 2 cut(s) 255, 305
FspBI CTAG 2 cut(s) 132, 345
GlaI GCGC 2 cut(s) 161, 163
GluI GCNGC 2 cut(s) 255, 305
GsaI CCCAGC 1 cut(s) 311
HaeIII GGCC 2 cut(s) 398, 409
HapII CCGG 3 cut(s) 395, 399, 411
HhaI GCGC 2 cut(s) 162, 164
Hin1II CATG 3 cut(s) 215, 515, 538
Hin6I GCGC 2 cut(s) 160, 162
HinP1I GCGC 2 cut(s) 160, 162
HincII GTYRAC 1 cut(s) 519
HindII GTYRAC 1 cut(s) 519
HinfI GANTC 2 cut(s) 414, 515
HpaII CCGG 3 cut(s) 395, 399, 411
Hpy166II GTNNAC 2 cut(s) 97, 519
Hpy188III TCNNGA 1 cut(s) 512
Hpy8I GTNNAC 2 cut(s) 97, 519
HpyAV CCTTC 1 cut(s) 13
HpyCH4III ACNGT 1 cut(s) 296
HpyCH4V TGCA 2 cut(s) 185, 211
HpyF10VI GCNNNNNNNGC 3 cut(s) 260, 381, 447
HpyF3I CTNAG 1 cut(s) 366
Hsp92II CATG 3 cut(s) 215, 515, 538
HspAI GCGC 2 cut(s) 160, 162
KroI GCCGGC 1 cut(s) 394
KroNI GCCGGC 1 cut(s) 396
Kzo9I GATC 2 cut(s) 245, 369
Lsp1109I GCAGC 1 cut(s) 291
LweI GCATC 1 cut(s) 458
MaeI CTAG 2 cut(s) 132, 345
MaeIII GTNAC 2 cut(s) 296, 529
MalI GATC 2 cut(s) 247, 371
MboI GATC 2 cut(s) 245, 369
MboII GAAGA 1 cut(s) 67
MflI RGATCY 1 cut(s) 369
MluCI AATT 3 cut(s) 37, 49, 525
MlyI GAGTC 2 cut(s) 423, 524
MnlI CCTC 2 cut(s) 7, 309
MroNI GCCGGC 1 cut(s) 394
MseI TTAA 1 cut(s) 524
MspI CCGG 3 cut(s) 395, 399, 411
MspR9I CCNGG 1 cut(s) 411
MvnI CGCG 3 cut(s) 162, 270, 375
MwoI GCNNNNNNNGC 3 cut(s) 260, 381, 447
NaeI GCCGGC 1 cut(s) 396
NciI CCSGG 1 cut(s) 411
NdeII GATC 2 cut(s) 245, 369
NgoMIV GCCGGC 1 cut(s) 394
NlaIII CATG 3 cut(s) 215, 515, 538
NlaIV GGNNCC 2 cut(s) 202, 320
NmeAIII GCCGAG 1 cut(s) 37
NmuCI GTSAC 1 cut(s) 296
NspI RCATGY 1 cut(s) 215
PagI TCATGA 1 cut(s) 511
PalAI GGCGCGCC 1 cut(s) 160
PauI GCGCGC 1 cut(s) 160
PdiI GCCGGC 1 cut(s) 396
PkrI GCNGC 2 cut(s) 256, 306
PleI GAGTC 2 cut(s) 422, 523
PpsI GAGTC 2 cut(s) 422, 523
PspFI CCCAGC 1 cut(s) 307
PspN4I GGNNCC 2 cut(s) 202, 320
PspPI GGNCC 2 cut(s) 332, 408
PsuI RGATCY 1 cut(s) 369
PteI GCGCGC 1 cut(s) 160
RsaI GTAC 1 cut(s) 349
RsaNI GTAC 1 cut(s) 348
SaqAI TTAA 1 cut(s) 524
SatI GCNGC 2 cut(s) 255, 305
Sau3AI GATC 2 cut(s) 245, 369
Sau96I GGNCC 2 cut(s) 332, 408
ScaI AGTACT 1 cut(s) 349
SchI GAGTC 2 cut(s) 423, 524
ScrFI CCNGG 1 cut(s) 411
SetI ASST 3 cut(s) 360, 382, 452
SfaNI GCATC 1 cut(s) 458
SgsI GGCGCGCC 1 cut(s) 160
SinI GGWCC 1 cut(s) 332
SpeI ACTAGT 1 cut(s) 344
Sse9I AATT 3 cut(s) 37, 49, 525
SsiI CCGC 3 cut(s) 254, 270, 373
SspMI CTAG 2 cut(s) 132, 345
StyD4I CCNGG 1 cut(s) 409
TaaI ACNGT 1 cut(s) 296
TasI AATT 3 cut(s) 37, 49, 525
TatI WGTACW 1 cut(s) 347
TauI GCSGC 1 cut(s) 257
Tru1I TTAA 1 cut(s) 524
Tru9I TTAA 1 cut(s) 524
TscAI CASTG 3 cut(s) 112, 200, 232
TseFI GTSAC 1 cut(s) 296
TseI GCWGC 1 cut(s) 304
Tsp45I GTSAC 1 cut(s) 296
TspDTI ATGAA 1 cut(s) 500
TspRI CASTG 3 cut(s) 112, 200, 232
VpaK11BI GGWCC 1 cut(s) 332
XapI RAATTY 1 cut(s) 49
XceI RCATGY 1 cut(s) 215
XspI CTAG 2 cut(s) 132, 345
ZrmI AGTACT 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.