Rh5AG501100

23 kDa jasmonate-induced protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0001765
Physical Location & Seq
Forward (+)
84857216 .. 84864677
7462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG501100.1

Sequence Viewer

Length: 669 bp
ATGGCGAACGTGTTTGGCAACCCCATAACCGACTCGACCCTGAAAGGAATGGCAGAGTATGCCAACAAGTGGGATATAACCGCAGTTGACAGGGCCCACATAGCAATTAACATGAAAAACGCCGACATGAAGGATACGAATGCCCACACTTACGTGGAGAATCTGAATCTGAATCTGAAGAAACAGCGGGGAACTGTAGTATCCACACTTTGCCTCATTTACAATGCTACTGGGAACACTATGACGTTGGTTGGTAGTATAGATCGGTCTGGGCGCATTGGACAAGCCCCGTACCCAATAGTAATTCAAAATGGCCAGTGGGGTGCTTTTTTGCATAACAAAGTATCTGAAGTGACACTTGGATCTATAGCAGGTGTTGTGTATCGAGGCAAGAACGGAAATAAAGGCGACGACTGTGACTACATGATGACTTGGTCCAACACAGAATATGACCAGAGTGTCTGGACTGAGGCCCGTGAAGTGAACCACTTCACTGATGCAACATGGAACTACGTACTTGGAAAGCTTAAAAAGACTGGCTACAGCTACCGCGACTCATGGGGGGGATGCTTGTCAATTATATCAACTGGCAGTGGCACTTCCCCTGTGGTGGAAGCAACATTCACTTTAGAAGATGCCGTCAATGCCAATCAAGTCGGCTCCTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

222

Amino Acids

24.34

Weight (kDa)

6.07

Isoelectric Point (pI)

17.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nakanori PF21230 33 - 197 3.1e-34 Nakanori-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 362
AasI GACNNNNNNGTC 1 cut(s) 458
Acc36I ACCTGC 1 cut(s) 362
AccB7I CCANNNNNTGG 1 cut(s) 69
AccII CGCG 1 cut(s) 552
AciI CCGC 3 cut(s) 81, 187, 550
AclWI GGATC 1 cut(s) 370
AcoI YGGCCR 1 cut(s) 313
AcuI CTGAAG 2 cut(s) 197, 369
AfaI GTAC 2 cut(s) 293, 516
AfiI CCNNNNNNNGG 2 cut(s) 69, 610
AflIII ACRYGT 1 cut(s) 9
AgsI TTSAA 1 cut(s) 308
AjuI GAANNNNNNNTTGG 2 cut(s) 342, 374
AleI CACNNNNGTG 1 cut(s) 152
AluBI AGCT 2 cut(s) 526, 546
AluI AGCT 2 cut(s) 526, 546
AlwI GGATC 1 cut(s) 370
AoxI GGCC 3 cut(s) 93, 313, 471
ApaI GGGCCC 1 cut(s) 97
Asp700I GAANNNNTTC 1 cut(s) 488
AspLEI GCGC 1 cut(s) 276
AspS9I GGNCC 4 cut(s) 93, 94, 435, 472
AvaII GGWCC 1 cut(s) 435
BaeGI GKGCMC 1 cut(s) 97
BaeI ACNNNNGTAYC 2 cut(s) 183, 216
BalI TGGCCA 1 cut(s) 315
BanII GRGCYC 1 cut(s) 97
BceAI ACGGC 1 cut(s) 623
BciVI GTATCC 2 cut(s) 127, 211
BfaI CTAG 1 cut(s) 667
BfmI CTRYAG 3 cut(s) 195, 366, 541
BfuAI ACCTGC 1 cut(s) 362
BfuI GTATCC 2 cut(s) 127, 211
Bme18I GGWCC 1 cut(s) 435
BmgT120I GGNCC 4 cut(s) 93, 94, 435, 472
BmiI GGNNCC 2 cut(s) 95, 661
BmrI ACTGGG 1 cut(s) 240
BmsI GCATC 3 cut(s) 487, 557, 625
BmuI ACTGGG 1 cut(s) 240
BsaAI YACGTR 2 cut(s) 154, 514
Bsc4I CCNNNNNNNGG 2 cut(s) 69, 610
Bse1I ACTGG 4 cut(s) 235, 316, 541, 592
BseGI GGATG 1 cut(s) 572
BseLI CCNNNNNNNGG 2 cut(s) 69, 610
BseMII CTCAG 1 cut(s) 459
BseNI ACTGG 4 cut(s) 235, 316, 541, 592
BseSI GKGCMC 1 cut(s) 97
Bsh1236I CGCG 1 cut(s) 552
BshFI GGCC 3 cut(s) 95, 315, 473
BslI CCNNNNNNNGG 2 cut(s) 69, 610
BsmI GAATGC 1 cut(s) 145
BsnI GGCC 3 cut(s) 95, 315, 473
Bsp120I GGGCCC 1 cut(s) 93
Bsp1286I GDGCHC 1 cut(s) 97
Bsp143I GATC 2 cut(s) 262, 362
BspACI CCGC 3 cut(s) 81, 187, 550
BspANI GGCC 3 cut(s) 95, 315, 473
BspCNI CTCAG 1 cut(s) 460
BspFNI CGCG 1 cut(s) 552
BspLI GGNNCC 2 cut(s) 95, 661
BspMI ACCTGC 1 cut(s) 362
BspPI GGATC 1 cut(s) 370
BsrI ACTGG 4 cut(s) 235, 316, 541, 592
BssMI GATC 2 cut(s) 262, 362
Bst4CI ACNGT 2 cut(s) 196, 416
BstAPI GCANNNNNTGC 1 cut(s) 59
BstBAI YACGTR 2 cut(s) 154, 514
BstDEI CTNAG 1 cut(s) 468
BstF5I GGATG 1 cut(s) 572
BstFNI CGCG 1 cut(s) 552
BstHHI GCGC 1 cut(s) 276
BstKTI GATC 2 cut(s) 265, 365
BstMBI GATC 2 cut(s) 262, 362
BstMWI GCNNNNNNNGC 3 cut(s) 59, 101, 644
BstSFI CTRYAG 3 cut(s) 195, 366, 541
BstSLI GKGCMC 1 cut(s) 97
BstSNI TACGTA 1 cut(s) 514
BstUI CGCG 1 cut(s) 552
BstX2I RGATCY 1 cut(s) 362
BstYI RGATCY 1 cut(s) 362
BsuI GTATCC 2 cut(s) 127, 211
BsuRI GGCC 3 cut(s) 95, 315, 473
BtsCI GGATG 1 cut(s) 572
BtsI GCAGTG 1 cut(s) 598
BtsIMutI CAGTG 3 cut(s) 323, 492, 598
BveI ACCTGC 1 cut(s) 362
CfoI GCGC 1 cut(s) 276
Cfr13I GGNCC 4 cut(s) 93, 94, 435, 472
Csp6I GTAC 2 cut(s) 292, 515
CviAII CATG 5 cut(s) 112, 127, 424, 504, 558
CviJI RGCY 8 cut(s) 95, 287, 315, 473, 526, 540, 546, 660
CviKI_1 RGCY 8 cut(s) 95, 287, 315, 473, 526, 540, 546, 660
CviQI GTAC 2 cut(s) 292, 515
DdeI CTNAG 1 cut(s) 468
DpnI GATC 2 cut(s) 264, 364
DpnII GATC 2 cut(s) 262, 362
DrdI GACNNNNNNGTC 1 cut(s) 458
DseDI GACNNNNNNGTC 1 cut(s) 458
EaeI YGGCCR 1 cut(s) 313
Eco105I TACGTA 1 cut(s) 514
Eco24I GRGCYC 1 cut(s) 97
Eco47I GGWCC 1 cut(s) 435
Eco57I CTGAAG 2 cut(s) 197, 369
EcoO109I RGGNCCY 1 cut(s) 93
EcoT38I GRGCYC 1 cut(s) 97
FaeI CATG 5 cut(s) 115, 130, 427, 507, 561
FalI AAGNNNNNCTT 2 cut(s) 342, 374
FatI CATG 5 cut(s) 111, 126, 423, 503, 557
FauI CCCGC 1 cut(s) 180
FokI GGATG 1 cut(s) 579
FriOI GRGCYC 1 cut(s) 97
FspBI CTAG 1 cut(s) 667
GlaI GCGC 1 cut(s) 275
HaeIII GGCC 3 cut(s) 95, 315, 473
HhaI GCGC 1 cut(s) 276
Hin1II CATG 5 cut(s) 115, 130, 427, 507, 561
Hin6I GCGC 1 cut(s) 274
HinP1I GCGC 1 cut(s) 274
HincII GTYRAC 1 cut(s) 88
HindII GTYRAC 1 cut(s) 88
HindIII AAGCTT 1 cut(s) 524
HinfI GANTC 5 cut(s) 32, 160, 166, 172, 554
Hpy166II GTNNAC 2 cut(s) 88, 484
Hpy188I TCNGA 4 cut(s) 165, 171, 177, 349
Hpy188III TCNNGA 1 cut(s) 463
Hpy8I GTNNAC 2 cut(s) 88, 484
Hpy99I CGWCG 1 cut(s) 413
HpyAV CCTTC 1 cut(s) 124
HpyCH4III ACNGT 2 cut(s) 196, 416
HpyCH4IV ACGT 4 cut(s) 9, 153, 245, 513
HpyCH4V TGCA 2 cut(s) 334, 500
HpyF10VI GCNNNNNNNGC 3 cut(s) 59, 101, 644
HpyF3I CTNAG 1 cut(s) 468
HpySE526I ACGT 4 cut(s) 9, 153, 245, 513
Hsp92II CATG 5 cut(s) 115, 130, 427, 507, 561
HspAI GCGC 1 cut(s) 274
Kzo9I GATC 2 cut(s) 262, 362
LmnI GCTCC 1 cut(s) 665
LweI GCATC 3 cut(s) 487, 557, 625
MaeI CTAG 1 cut(s) 667
MaeII ACGT 4 cut(s) 9, 153, 245, 513
MaeIII GTNAC 2 cut(s) 352, 416
MalI GATC 2 cut(s) 264, 364
MboI GATC 2 cut(s) 262, 362
MboII GAAGA 2 cut(s) 190, 644
MflI RGATCY 1 cut(s) 362
MhlI GDGCHC 1 cut(s) 97
MlsI TGGCCA 1 cut(s) 315
MluCI AATT 3 cut(s) 105, 303, 576
MluNI TGGCCA 1 cut(s) 315
MlyI GAGTC 2 cut(s) 26, 548
MmeI TCCRAC 1 cut(s) 462
MnlI CCTC 3 cut(s) 224, 380, 463
Mox20I TGGCCA 1 cut(s) 315
MroXI GAANNNNTTC 1 cut(s) 488
MscI TGGCCA 1 cut(s) 315
MseI TTAA 2 cut(s) 108, 528
MslI CAYNNNNRTG 1 cut(s) 152
Msp20I TGGCCA 1 cut(s) 315
MspA1I CMGCKG 1 cut(s) 187
Mva1269I GAATGC 1 cut(s) 145
MvnI CGCG 1 cut(s) 552
MwoI GCNNNNNNNGC 3 cut(s) 59, 101, 644
NdeII GATC 2 cut(s) 262, 362
NlaIII CATG 5 cut(s) 115, 130, 427, 507, 561
NlaIV GGNNCC 2 cut(s) 95, 661
NmuCI GTSAC 2 cut(s) 352, 416
OliI CACNNNNGTG 1 cut(s) 152
PaqCI CACCTGC 1 cut(s) 362
PctI GAATGC 1 cut(s) 145
PdmI GAANNNNTTC 1 cut(s) 488
PfeI GAWTC 3 cut(s) 160, 166, 172
PflFI GACNNNGTC 1 cut(s) 433
PflMI CCANNNNNTGG 1 cut(s) 69
PleI GAGTC 2 cut(s) 26, 548
PpsI GAGTC 2 cut(s) 26, 548
Ppu21I YACGTR 2 cut(s) 154, 514
PspN4I GGNNCC 2 cut(s) 95, 661
PspOMI GGGCCC 1 cut(s) 93
PspPI GGNCC 4 cut(s) 93, 94, 435, 472
PsuI RGATCY 1 cut(s) 362
PsyI GACNNNGTC 1 cut(s) 433
RsaI GTAC 2 cut(s) 293, 516
RsaNI GTAC 2 cut(s) 292, 515
RseI CAYNNNNRTG 1 cut(s) 152
SaqAI TTAA 2 cut(s) 108, 528
Sau3AI GATC 2 cut(s) 262, 362
Sau96I GGNCC 4 cut(s) 93, 94, 435, 472
SchI GAGTC 2 cut(s) 26, 548
SduI GDGCHC 1 cut(s) 97
SetI ASST 7 cut(s) 12, 156, 248, 376, 516, 528, 548
SfaNI GCATC 3 cut(s) 487, 557, 625
SfcI CTRYAG 3 cut(s) 195, 366, 541
SinI GGWCC 1 cut(s) 435
SmiMI CAYNNNNRTG 1 cut(s) 152
SnaBI TACGTA 1 cut(s) 514
Sse9I AATT 3 cut(s) 105, 303, 576
SsiI CCGC 3 cut(s) 81, 187, 550
SspMI CTAG 1 cut(s) 667
TaaI ACNGT 2 cut(s) 196, 416
TaiI ACGT 4 cut(s) 12, 156, 248, 516
TaqI TCGA 2 cut(s) 35, 385
TaqII GACCGA 1 cut(s) 255
TasI AATT 3 cut(s) 105, 303, 576
TfiI GAWTC 3 cut(s) 160, 166, 172
Tru1I TTAA 2 cut(s) 108, 528
Tru9I TTAA 2 cut(s) 108, 528
TscAI CASTG 3 cut(s) 323, 499, 598
TseFI GTSAC 2 cut(s) 352, 416
Tsp45I GTSAC 2 cut(s) 352, 416
TspDTI ATGAA 2 cut(s) 128, 143
TspGWI ACGGA 1 cut(s) 411
TspRI CASTG 3 cut(s) 323, 499, 598
Tth111I GACNNNGTC 1 cut(s) 433
Van91I CCANNNNNTGG 1 cut(s) 69
VpaK11BI GGWCC 1 cut(s) 435
XmnI GAANNNNTTC 1 cut(s) 488
XspI CTAG 1 cut(s) 667
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.