RLG00000020337

23 kDa jasmonate-induced protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001765
Physical Location & Seq
Forward (+)
63858036 .. 63859215
1180 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020337

Sequence Viewer

Length: 669 bp
ATGGCGAACGTATTTGGCAACCCCATAACCGACTCAACTCTAGCGGTAATGCCAGATTATGCCAACAAGCAACCAACAGCAGTTGATAGGGCACGCGTGGCTCTCAACATGCAAAGCATCGGCACGAAGGCTACCGACGCACTCACTTTCGTGGAGAACTTGAAGAAGCAGTACGGAGATGGAGTCTCCACACTTTGCCTCCTTTACAATGCTACTGGGAACACTTTAACTTTTGTTACTCCTAAAGTTGGTATGGCCATATTGGCCAAGCCCCCTACCCAATGCGAATTCAAAATGGACAATGGGGTGCCTTTCTGCATGTGCAAAGCTCTGCAGACGCAAACGGTTCTTGTGCCGCTCCTGTGTAATTTCGCGGCAAAAAAAGCAATGGGGTTGACTGTTTGTATTGAGGCCTGCGCCGTGAACCACTTCAATACAGTAATTTATGGTTATCTGGAACAATCTCGTTACAACTACAGCGACACATGGGAGGGATGCTTAACAACTATAGCAATTGGCAGTGGCACTTCCCCTGTTTATGTTTTAATGATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGTTCAGAATTTATTAGCTTCAATGGAACTCGATCAATTAAGTCCATTACCTTATTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

223

Amino Acids

24.68

Weight (kDa)

5.76

Isoelectric Point (pI)

32.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nakanori PF21230 31 - 78 3.7e-13 Nakanori-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 307
AccBSI CCGCTC 1 cut(s) 358
AccII CGCG 2 cut(s) 96, 374
AciI CCGC 3 cut(s) 44, 356, 374
AcoI YGGCCR 2 cut(s) 255, 264
AcsI RAATTY 2 cut(s) 287, 616
AfaI GTAC 1 cut(s) 173
AfiI CCNNNNNNNGG 1 cut(s) 248
AflIII ACRYGT 1 cut(s) 94
AgsI TTSAA 4 cut(s) 163, 292, 433, 630
AleI CACNNNNGTG 1 cut(s) 149
AluBI AGCT 2 cut(s) 329, 626
AluI AGCT 2 cut(s) 329, 626
Alw26I GTCTC 1 cut(s) 190
AoxI GGCC 3 cut(s) 255, 264, 411
ApoI RAATTY 2 cut(s) 287, 616
Asp700I GAANNNNTTC 1 cut(s) 428
AspLEI GCGC 1 cut(s) 419
BaeGI GKGCMC 1 cut(s) 94
BalI TGGCCA 2 cut(s) 257, 266
BanI GGYRCC 1 cut(s) 307
BarI GAAGNNNNNNTAC 2 cut(s) 155, 187
BccI CCATC 1 cut(s) 173
BceAI ACGGC 1 cut(s) 404
BcoDI GTCTC 1 cut(s) 190
BfaI CTAG 1 cut(s) 41
BfmI CTRYAG 3 cut(s) 332, 475, 507
BglI GCCNNNNNGGC 1 cut(s) 263
BisI GCNGC 2 cut(s) 356, 375
BlsI GCNGC 2 cut(s) 357, 376
BmiI GGNNCC 1 cut(s) 309
BmrI ACTGGG 1 cut(s) 225
BmsI GCATC 2 cut(s) 126, 485
BmuI ACTGGG 1 cut(s) 225
BsaXI ACNNNNNCTCC 4 cut(s) 168, 183, 198, 213
Bsc4I CCNNNNNNNGG 1 cut(s) 248
Bse1I ACTGG 1 cut(s) 220
Bse3DI GCAATG 1 cut(s) 393
BseGI GGATG 1 cut(s) 500
BseLI CCNNNNNNNGG 1 cut(s) 248
BseMI GCAATG 1 cut(s) 393
BseNI ACTGG 1 cut(s) 220
BseSI GKGCMC 1 cut(s) 94
Bsh1236I CGCG 2 cut(s) 96, 374
BshFI GGCC 3 cut(s) 257, 266, 413
BshNI GGYRCC 1 cut(s) 307
BslI CCNNNNNNNGG 1 cut(s) 248
BsmAI GTCTC 1 cut(s) 190
BsnI GGCC 3 cut(s) 257, 266, 413
Bsp1286I GDGCHC 1 cut(s) 94
Bsp143I GATC 1 cut(s) 640
BspACI CCGC 3 cut(s) 44, 356, 374
BspANI GGCC 3 cut(s) 257, 266, 413
BspFNI CGCG 2 cut(s) 96, 374
BspLI GGNNCC 1 cut(s) 309
BspMAI CTGCAG 1 cut(s) 336
BspT107I GGYRCC 1 cut(s) 307
BsrBI CCGCTC 1 cut(s) 358
BsrDI GCAATG 1 cut(s) 393
BsrI ACTGG 1 cut(s) 220
BssMI GATC 1 cut(s) 640
Bst4CI ACNGT 3 cut(s) 346, 400, 439
BstC8I GCNNGC 2 cut(s) 94, 415
BstF5I GGATG 1 cut(s) 500
BstFNI CGCG 2 cut(s) 96, 374
BstHHI GCGC 1 cut(s) 419
BstKTI GATC 1 cut(s) 643
BstMAI GTCTC 1 cut(s) 190
BstMBI GATC 1 cut(s) 640
BstMWI GCNNNNNNNGC 4 cut(s) 98, 137, 263, 383
BstNSI RCATGY 2 cut(s) 112, 322
BstSFI CTRYAG 3 cut(s) 332, 475, 507
BstSLI GKGCMC 1 cut(s) 94
BstUI CGCG 2 cut(s) 96, 374
BsuRI GGCC 3 cut(s) 257, 266, 413
BtsCI GGATG 1 cut(s) 500
BtsI GCAGTG 1 cut(s) 526
BtsIMutI CAGTG 1 cut(s) 526
Cac8I GCNNGC 2 cut(s) 94, 415
CfoI GCGC 1 cut(s) 419
CseI GACGC 2 cut(s) 146, 346
Csp6I GTAC 1 cut(s) 172
CviAII CATG 3 cut(s) 109, 319, 486
CviJI RGCY 8 cut(s) 101, 131, 257, 266, 271, 329, 413, 626
CviKI_1 RGCY 8 cut(s) 101, 131, 257, 266, 271, 329, 413, 626
CviQI GTAC 1 cut(s) 172
DpnI GATC 1 cut(s) 642
DpnII GATC 1 cut(s) 640
EaeI YGGCCR 2 cut(s) 255, 264
Eco147I AGGCCT 1 cut(s) 413
EcoRI GAATTC 1 cut(s) 287
FaeI CATG 3 cut(s) 112, 322, 489
FatI CATG 3 cut(s) 108, 318, 485
Fnu4HI GCNGC 2 cut(s) 356, 375
FokI GGATG 1 cut(s) 507
Fsp4HI GCNGC 2 cut(s) 356, 375
FspBI CTAG 1 cut(s) 41
GlaI GCGC 1 cut(s) 418
GluI GCNGC 2 cut(s) 356, 375
HaeIII GGCC 3 cut(s) 257, 266, 413
HgaI GACGC 2 cut(s) 146, 346
HhaI GCGC 1 cut(s) 419
Hin1II CATG 3 cut(s) 112, 322, 489
Hin6I GCGC 1 cut(s) 417
HinP1I GCGC 1 cut(s) 417
HincII GTYRAC 1 cut(s) 396
HindII GTYRAC 1 cut(s) 396
HinfI GANTC 2 cut(s) 32, 183
Hpy166II GTNNAC 2 cut(s) 396, 424
Hpy188I TCNGA 1 cut(s) 615
Hpy188III TCNNGA 1 cut(s) 455
Hpy8I GTNNAC 2 cut(s) 396, 424
Hpy99I CGWCG 1 cut(s) 140
HpyAV CCTTC 1 cut(s) 121
HpyCH4III ACNGT 3 cut(s) 346, 400, 439
HpyCH4IV ACGT 1 cut(s) 9
HpyCH4V TGCA 4 cut(s) 112, 318, 324, 334
HpyF10VI GCNNNNNNNGC 4 cut(s) 98, 137, 263, 383
HpySE526I ACGT 1 cut(s) 9
Hsp92II CATG 3 cut(s) 112, 322, 489
HspAI GCGC 1 cut(s) 417
Kzo9I GATC 1 cut(s) 640
LmnI GCTCC 1 cut(s) 363
LpnPI CCDG 6 cut(s) 66, 201, 374, 427, 440, 546
LweI GCATC 2 cut(s) 126, 485
MaeI CTAG 1 cut(s) 41
MaeII ACGT 1 cut(s) 9
MaeIII GTNAC 2 cut(s) 235, 467
MalI GATC 1 cut(s) 642
MbiI CCGCTC 1 cut(s) 358
MboI GATC 1 cut(s) 640
MboII GAAGA 1 cut(s) 175
MfeI CAATTG 1 cut(s) 513
MhlI GDGCHC 1 cut(s) 94
MlsI TGGCCA 2 cut(s) 257, 266
MluCI AATT 6 cut(s) 287, 367, 441, 513, 616, 644
MluI ACGCGT 1 cut(s) 94
MluNI TGGCCA 2 cut(s) 257, 266
MlyI GAGTC 2 cut(s) 26, 192
MnlI CCTC 3 cut(s) 209, 403, 484
Mox20I TGGCCA 2 cut(s) 257, 266
MroXI GAANNNNTTC 1 cut(s) 428
MscI TGGCCA 2 cut(s) 257, 266
MseI TTAA 4 cut(s) 227, 500, 545, 647
MslI CAYNNNNRTG 1 cut(s) 149
Msp20I TGGCCA 2 cut(s) 257, 266
MunI CAATTG 1 cut(s) 513
MvnI CGCG 2 cut(s) 96, 374
MwoI GCNNNNNNNGC 4 cut(s) 98, 137, 263, 383
NdeII GATC 1 cut(s) 640
NlaIII CATG 3 cut(s) 112, 322, 489
NlaIV GGNNCC 1 cut(s) 309
NspI RCATGY 2 cut(s) 112, 322
OliI CACNNNNGTG 1 cut(s) 149
PceI AGGCCT 1 cut(s) 413
PdmI GAANNNNTTC 1 cut(s) 428
PkrI GCNGC 2 cut(s) 357, 376
PleI GAGTC 2 cut(s) 26, 191
PpsI GAGTC 2 cut(s) 26, 191
PspN4I GGNNCC 1 cut(s) 309
PstI CTGCAG 1 cut(s) 336
RsaI GTAC 1 cut(s) 173
RsaNI GTAC 1 cut(s) 172
RseI CAYNNNNRTG 1 cut(s) 149
SaqAI TTAA 4 cut(s) 227, 500, 545, 647
SatI GCNGC 2 cut(s) 356, 375
Sau3AI GATC 1 cut(s) 640
SchI GAGTC 2 cut(s) 26, 192
SduI GDGCHC 1 cut(s) 94
SetI ASST 4 cut(s) 12, 331, 628, 661
SfaNI GCATC 2 cut(s) 126, 485
SfcI CTRYAG 3 cut(s) 332, 475, 507
SfiI GGCCNNNNNGGCC 1 cut(s) 263
SmiMI CAYNNNNRTG 1 cut(s) 149
Sse9I AATT 6 cut(s) 287, 367, 441, 513, 616, 644
SseBI AGGCCT 1 cut(s) 413
SsiI CCGC 3 cut(s) 44, 356, 374
SspMI CTAG 1 cut(s) 41
StuI AGGCCT 1 cut(s) 413
TaaI ACNGT 3 cut(s) 346, 400, 439
TaiI ACGT 1 cut(s) 12
TaqI TCGA 1 cut(s) 639
TasI AATT 6 cut(s) 287, 367, 441, 513, 616, 644
TauI GCSGC 2 cut(s) 358, 377
Tru1I TTAA 4 cut(s) 227, 500, 545, 647
Tru9I TTAA 4 cut(s) 227, 500, 545, 647
TscAI CASTG 1 cut(s) 526
TspGWI ACGGA 1 cut(s) 189
TspRI CASTG 1 cut(s) 526
XapI RAATTY 2 cut(s) 287, 616
XceI RCATGY 2 cut(s) 112, 322
XmnI GAANNNNTTC 1 cut(s) 428
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.