pycom09g08070

23 kDa jasmonate-induced protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0001765
Physical Location & Seq
Reverse (-)
6193554 .. 6194563
1010 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g08070.3

Sequence Viewer

Length: 774 bp
ATGCTGCATGCATCCCTCACGTTTTTTATTTCAATTTTTATTTTTAATAGTAGTGATTCCAAAGCTAGCTGCATCATGAGAGCGAAAATCAAGAGAGACACAGAGACAGACAGAGAATTAATCAAGTTCAGTATAAAGATGGCATATAACGTTTTTGGCAACCCCATCACGGATGAAACTTTGAAGGGCATGCCAGAGTACGTCTACAAGCAAATAGGAAAATTAGACAGCGCACACGTGGCGTTGACTATGAAAAATGCCGACAAGAAGGACTTCAACGCTCGATCACATGTGGAGGAACTGAAGAAGCAGTATGGCGACGGAGTCTCCACACTCTGCCTTGTTTACAATGCAACTGGGCGCACCATAAGATATGTTTGTAAGAATGATTGGTTTGGGCACATCGGGAAGGCACCATACCCACCGCTGATTGCAAATGGTCAGTGGGGTGCGTTTCTGCACGTCAAAACTGCCGGAAAGTCTTCTGGATCCGATGCTGCTATTGTGTACCGAGGCCTAAATAATGTTAGCGACGAATGCGACTGGATGTTGTCTTGGAGAAACCCATCGGACAGTACTAGCTCGGCCAACACAGTCTATACAGAGATTCGAGGGCCTAATCACTTTGACCCTTATTGGGACTATATCCATGGTTTGTTGAAGGAAAGTAAAGCGTACAGCAAGGACACATGGAATGGATGCGTGTCAATCATGTCAACTGGCATTGATACTTCCCCAGTTGTTGAAGCAATACTCACTTTAGAAAATTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

258

Amino Acids

28.77

Weight (kDa)

7.64

Isoelectric Point (pI)

27.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 412
AccI GTMKAC 1 cut(s) 204
AciI CCGC 1 cut(s) 425
AclI AACGTT 1 cut(s) 150
AclWI GGATC 2 cut(s) 483, 496
AcoI YGGCCR 1 cut(s) 585
AcsI RAATTY 1 cut(s) 766
AcuI CTGAAG 1 cut(s) 323
AcvI CACGTG 1 cut(s) 238
AfaI GTAC 4 cut(s) 200, 509, 577, 677
AfiI CCNNNNNNNGG 2 cut(s) 169, 637
AflIII ACRYGT 2 cut(s) 235, 289
AgsI TTSAA 5 cut(s) 33, 184, 277, 661, 746
AjiI CACGTC 1 cut(s) 463
AluBI AGCT 3 cut(s) 65, 69, 582
AluI AGCT 3 cut(s) 65, 69, 582
Alw26I GTCTC 3 cut(s) 90, 98, 331
AlwI GGATC 2 cut(s) 483, 496
AoxI GGCC 3 cut(s) 514, 585, 614
ApeKI GCWGC 3 cut(s) 4, 69, 497
ApoI RAATTY 1 cut(s) 766
AseI ATTAAT 1 cut(s) 119
Asp700I GAANNNNTTC 2 cut(s) 272, 481
AspLEI GCGC 2 cut(s) 233, 363
AspS9I GGNCC 1 cut(s) 614
AsuNHI GCTAGC 1 cut(s) 65
BaeGI GKGCMC 1 cut(s) 402
BamHI GGATCC 1 cut(s) 488
BanI GGYRCC 1 cut(s) 412
BarI GAAGNNNNNNTAC 2 cut(s) 401, 433
BbrPI CACGTG 1 cut(s) 238
BbsI GAAGAC 1 cut(s) 474
BbvI GCAGC 2 cut(s) 56, 484
BccI CCATC 3 cut(s) 133, 173, 574
BcoDI GTCTC 3 cut(s) 90, 98, 331
BfaI CTAG 2 cut(s) 66, 579
BisI GCNGC 3 cut(s) 5, 70, 498
BlsI GCNGC 3 cut(s) 6, 71, 499
BmcAI AGTACT 1 cut(s) 577
BmgBI CACGTC 1 cut(s) 463
BmgT120I GGNCC 1 cut(s) 614
BmiI GGNNCC 2 cut(s) 414, 490
BmrI ACTGGG 2 cut(s) 366, 731
BmsI GCATC 4 cut(s) 20, 81, 484, 689
BmtI GCTAGC 1 cut(s) 69
BmuI ACTGGG 2 cut(s) 366, 731
BpiI GAAGAC 1 cut(s) 474
BsaAI YACGTR 1 cut(s) 238
BsaJI CCNNGG 2 cut(s) 511, 649
BsaXI ACNNNNNCTCC 2 cut(s) 311, 341
Bsc4I CCNNNNNNNGG 2 cut(s) 169, 637
Bse1I ACTGG 4 cut(s) 361, 548, 724, 737
BseDI CCNNGG 2 cut(s) 511, 649
BseGI GGATG 4 cut(s) 11, 178, 552, 704
BseLI CCNNNNNNNGG 2 cut(s) 169, 637
BseNI ACTGG 4 cut(s) 361, 548, 724, 737
BseSI GKGCMC 1 cut(s) 402
BseXI GCAGC 2 cut(s) 56, 484
BsgI GTGCAG 1 cut(s) 443
BshFI GGCC 3 cut(s) 516, 587, 616
BshNI GGYRCC 1 cut(s) 412
BsiSI CCGG 1 cut(s) 474
BslFI GGGAC 1 cut(s) 653
BslI CCNNNNNNNGG 2 cut(s) 169, 637
BsmAI GTCTC 3 cut(s) 90, 98, 331
BsmFI GGGAC 1 cut(s) 653
BsmI GAATGC 1 cut(s) 542
BsnI GGCC 3 cut(s) 516, 587, 616
Bsp1286I GDGCHC 1 cut(s) 402
Bsp143I GATC 2 cut(s) 284, 488
Bsp19I CCATGG 1 cut(s) 649
BspACI CCGC 1 cut(s) 425
BspANI GGCC 3 cut(s) 516, 587, 616
BspHI TCATGA 1 cut(s) 75
BspLI GGNNCC 2 cut(s) 414, 490
BspOI GCTAGC 1 cut(s) 69
BspPI GGATC 2 cut(s) 483, 496
BspT107I GGYRCC 1 cut(s) 412
BsrI ACTGG 4 cut(s) 361, 548, 724, 737
BssECI CCNNGG 2 cut(s) 511, 649
BssMI GATC 2 cut(s) 284, 488
BssT1I CCWWGG 1 cut(s) 649
Bst4CI ACNGT 2 cut(s) 575, 595
BstBAI YACGTR 1 cut(s) 238
BstC8I GCNNGC 3 cut(s) 9, 67, 191
BstDSI CCRYGG 1 cut(s) 649
BstF5I GGATG 4 cut(s) 11, 178, 552, 704
BstHHI GCGC 2 cut(s) 233, 363
BstKTI GATC 2 cut(s) 287, 491
BstMAI GTCTC 3 cut(s) 90, 98, 331
BstMBI GATC 2 cut(s) 284, 488
BstMWI GCNNNNNNNGC 2 cut(s) 239, 537
BstNSI RCATGY 3 cut(s) 11, 193, 293
BstSLI GKGCMC 1 cut(s) 402
BstV1I GCAGC 2 cut(s) 56, 484
BstV2I GAAGAC 1 cut(s) 474
BstX2I RGATCY 1 cut(s) 488
BstYI RGATCY 1 cut(s) 488
BsuRI GGCC 3 cut(s) 516, 587, 616
BtgI CCRYGG 1 cut(s) 649
BtrI CACGTC 1 cut(s) 463
BtsCI GGATG 4 cut(s) 11, 178, 552, 704
BtsIMutI CAGTG 1 cut(s) 449
Cac8I GCNNGC 3 cut(s) 9, 67, 191
CciI TCATGA 1 cut(s) 75
CfoI GCGC 2 cut(s) 233, 363
Cfr13I GGNCC 1 cut(s) 614
Csp6I GTAC 4 cut(s) 199, 508, 576, 676
CviAII CATG 7 cut(s) 8, 76, 190, 290, 650, 690, 712
CviJI RGCY 6 cut(s) 65, 69, 516, 582, 587, 616
CviKI_1 RGCY 6 cut(s) 65, 69, 516, 582, 587, 616
CviQI GTAC 4 cut(s) 199, 508, 576, 676
DpnI GATC 2 cut(s) 286, 490
DpnII GATC 2 cut(s) 284, 488
EaeI YGGCCR 1 cut(s) 585
Eco130I CCWWGG 1 cut(s) 649
Eco147I AGGCCT 1 cut(s) 516
Eco57I CTGAAG 1 cut(s) 323
Eco72I CACGTG 1 cut(s) 238
EcoO109I RGGNCCY 1 cut(s) 614
EcoT14I CCWWGG 1 cut(s) 649
EcoT22I ATGCAT 1 cut(s) 13
ErhI CCWWGG 1 cut(s) 649
FaeI CATG 7 cut(s) 11, 79, 193, 293, 653, 693, 715
FalI AAGNNNNNCTT 2 cut(s) 257, 289
FaqI GGGAC 1 cut(s) 653
FatI CATG 7 cut(s) 7, 75, 189, 289, 649, 689, 711
FblI GTMKAC 1 cut(s) 204
Fnu4HI GCNGC 3 cut(s) 5, 70, 498
FokI GGATG 3 cut(s) 185, 559, 711
Fsp4HI GCNGC 3 cut(s) 5, 70, 498
FspBI CTAG 2 cut(s) 66, 579
GlaI GCGC 2 cut(s) 232, 362
GluI GCNGC 3 cut(s) 5, 70, 498
HaeIII GGCC 3 cut(s) 516, 587, 616
HapII CCGG 1 cut(s) 474
HhaI GCGC 2 cut(s) 233, 363
Hin1II CATG 7 cut(s) 11, 79, 193, 293, 653, 693, 715
Hin6I GCGC 2 cut(s) 231, 361
HinP1I GCGC 2 cut(s) 231, 361
HincII GTYRAC 2 cut(s) 246, 717
HindII GTYRAC 2 cut(s) 246, 717
HinfI GANTC 3 cut(s) 56, 324, 607
HpaII CCGG 1 cut(s) 474
Hpy166II GTNNAC 5 cut(s) 205, 246, 346, 508, 717
Hpy188I TCNGA 2 cut(s) 493, 571
Hpy188III TCNNGA 4 cut(s) 76, 91, 406, 486
Hpy8I GTNNAC 5 cut(s) 205, 246, 346, 508, 717
Hpy99I CGWCG 2 cut(s) 323, 536
HpyAV CCTTC 4 cut(s) 178, 262, 403, 655
HpyCH4III ACNGT 2 cut(s) 575, 595
HpyCH4IV ACGT 5 cut(s) 20, 150, 201, 237, 462
HpyCH4V TGCA 6 cut(s) 7, 11, 72, 353, 434, 460
HpyF10VI GCNNNNNNNGC 2 cut(s) 239, 537
HpySE526I ACGT 5 cut(s) 20, 150, 201, 237, 462
Hsp92II CATG 7 cut(s) 11, 79, 193, 293, 653, 693, 715
HspAI GCGC 2 cut(s) 231, 361
Kzo9I GATC 2 cut(s) 284, 488
LpnPI CCDG 7 cut(s) 207, 342, 471, 487, 529, 705, 750
Lsp1109I GCAGC 2 cut(s) 56, 484
LweI GCATC 4 cut(s) 20, 81, 484, 689
MaeI CTAG 2 cut(s) 66, 579
MaeII ACGT 5 cut(s) 20, 150, 201, 237, 462
MalI GATC 2 cut(s) 286, 490
MboI GATC 2 cut(s) 284, 488
MboII GAAGA 2 cut(s) 316, 474
MflI RGATCY 1 cut(s) 488
MhlI GDGCHC 1 cut(s) 402
MluCI AATT 4 cut(s) 33, 116, 221, 766
MlyI GAGTC 1 cut(s) 333
MnlI CCTC 4 cut(s) 26, 289, 506, 605
Mph1103I ATGCAT 1 cut(s) 13
MroXI GAANNNNTTC 2 cut(s) 272, 481
MseI TTAA 2 cut(s) 45, 119
MspA1I CMGCKG 1 cut(s) 427
MspI CCGG 1 cut(s) 474
Mva1269I GAATGC 1 cut(s) 542
MwoI GCNNNNNNNGC 2 cut(s) 239, 537
NcoI CCATGG 1 cut(s) 649
NdeII GATC 2 cut(s) 284, 488
NheI GCTAGC 1 cut(s) 65
NlaIII CATG 7 cut(s) 11, 79, 193, 293, 653, 693, 715
NlaIV GGNNCC 2 cut(s) 414, 490
NmeAIII GCCGAG 1 cut(s) 563
NsiI ATGCAT 1 cut(s) 13
NspI RCATGY 3 cut(s) 11, 193, 293
PaeI GCATGC 2 cut(s) 11, 193
PagI TCATGA 1 cut(s) 75
PceI AGGCCT 1 cut(s) 516
PciI ACATGT 1 cut(s) 289
PctI GAATGC 1 cut(s) 542
PdmI GAANNNNTTC 2 cut(s) 272, 481
PfeI GAWTC 2 cut(s) 56, 607
PflFI GACNNNGTC 1 cut(s) 323
PkrI GCNGC 3 cut(s) 6, 71, 499
PleI GAGTC 1 cut(s) 332
PmaCI CACGTG 1 cut(s) 238
PmlI CACGTG 1 cut(s) 238
PpsI GAGTC 1 cut(s) 332
Ppu21I YACGTR 1 cut(s) 238
PscI ACATGT 1 cut(s) 289
PshBI ATTAAT 1 cut(s) 119
Psp1406I AACGTT 1 cut(s) 150
PspCI CACGTG 1 cut(s) 238
PspN4I GGNNCC 2 cut(s) 414, 490
PspPI GGNCC 1 cut(s) 614
PsuI RGATCY 1 cut(s) 488
PsyI GACNNNGTC 1 cut(s) 323
RsaI GTAC 4 cut(s) 200, 509, 577, 677
RsaNI GTAC 4 cut(s) 199, 508, 576, 676
SaqAI TTAA 2 cut(s) 45, 119
SatI GCNGC 3 cut(s) 5, 70, 498
Sau3AI GATC 2 cut(s) 284, 488
Sau96I GGNCC 1 cut(s) 614
ScaI AGTACT 1 cut(s) 577
SchI GAGTC 1 cut(s) 333
SduI GDGCHC 1 cut(s) 402
SetI ASST 8 cut(s) 23, 67, 71, 153, 204, 240, 465, 584
SfaNI GCATC 4 cut(s) 20, 81, 484, 689
SphI GCATGC 2 cut(s) 11, 193
Sse9I AATT 4 cut(s) 33, 116, 221, 766
SseBI AGGCCT 1 cut(s) 516
SsiI CCGC 1 cut(s) 425
SspMI CTAG 2 cut(s) 66, 579
StuI AGGCCT 1 cut(s) 516
StyI CCWWGG 1 cut(s) 649
TaaI ACNGT 2 cut(s) 575, 595
TaiI ACGT 5 cut(s) 23, 153, 204, 240, 465
TaqI TCGA 2 cut(s) 283, 610
TasI AATT 4 cut(s) 33, 116, 221, 766
TatI WGTACW 1 cut(s) 575
TfiI GAWTC 2 cut(s) 56, 607
Tru1I TTAA 2 cut(s) 45, 119
Tru9I TTAA 2 cut(s) 45, 119
TscAI CASTG 1 cut(s) 449
TseI GCWGC 3 cut(s) 4, 69, 497
TspDTI ATGAA 2 cut(s) 189, 266
TspGWI ACGGA 2 cut(s) 185, 336
TspRI CASTG 1 cut(s) 449
Tth111I GACNNNGTC 1 cut(s) 323
VspI ATTAAT 1 cut(s) 119
XapI RAATTY 1 cut(s) 766
XceI RCATGY 3 cut(s) 11, 193, 293
XmiI GTMKAC 1 cut(s) 204
XmnI GAANNNNTTC 2 cut(s) 272, 481
XspI CTAG 2 cut(s) 66, 579
ZrmI AGTACT 1 cut(s) 577
Zsp2I ATGCAT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.