Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001765

Physical Location & Seq

Genomic Coordinates Reverse (-)

20315031 .. 20364717

Gene Structure 49687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00098880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGCGAACGTGTTTGGCATCCCCATAATCGACTCAACCCTAGCAGCAATGCCAGAGTATGCCAACAAGCAAATAACCGCAGTTGATAGGGCACGCGTGGCTCTCCACCTGCAAAGCGCCGACATGAAGGCTGCCAACGCACTCACTTACGTGGAGAATTTGAAGAAGCAGTACGGAGGTGAAGTACCCGCCACACTTTGCCTCCTTTACAATGCTACTGGGAACACTTTAACATTTGTTACTGTTAAAGATGAGTACGGGCACATTGGACCAGCCCCATATCCATTGCGAATTCAAAATGGCCAGTGGGGTGCATTTCTGCACGTGAAAACCGCTGACGCTCCAACCGGATCTTATGCCGGTGTTGTGTATCGCGGCAAGAACCCCAATGGCATTGACTGGGACTGCATGATGGCATGGCGTAACCCCTTTGTGAACACCAACAACTCGTTTTTGTTTTTCCAGGTTTGTATTGAGGTTCGTGTTGTGAACCACTTCAATACATGGTGGGGAGTAATATATGGTTATTTGGAACAATCTCGCTACAACTATAGCGACACATGGGAGGGATGCTTAAGAACTATAGCAACTAGCGGTGGCACTTCCCCCGTAGTGAAAGCGGTATTCACTTTAGAAGATGCCGCCAATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

217

Amino Acids

23.99

Weight (kDa)

6.41

Isoelectric Point (pI)

30.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nakanori	PF21230	31 - 196	1.5e-32	Nakanori-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001765)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g36010
malus_domestica	MD05G1102400.v1.1 MD09G1162600.v1.1 MD09G1162700.v1.1 MD09G1162900.v1.1 MD09G1163100.v1.1 MD17G1147700.v1.1 MD17G1148000.v1.1 MD17G1148100.v1.1 MD17G1148200.v1.1
prunus_persica	Prupe.1G577300_v2.0.a1 Prupe.2G116800_v2.0.a1 Prupe.2G116900_v2.0.a1
pyrus_communis	pycom09g08020 pycom09g08070 pycom17g14020 pycom17g14090 pycom17g14130
rosa_laevigata	RLG00000019195 RLG00000019197 RLG00000020315 RLG00000020317 RLG00000020337
rosa_multiflora	Rmu_sc0001516.1_g000044 Rmu_sc0001516.1_g000051 Rmu_sc0001516.1_g000054 Rmu_sc0004032.1_g000004
rosa_roxburghii	Rroxscaffold_2G00098880 Rroxscaffold_2G00098890 Rroxscaffold_2G00099060 Rroxscaffold_2G00099100 Rroxscaffold_2G00099110 Rroxscaffold_2G00101280
rosa_rugosa	Rorug02G0403500 Rorug02G0403600 Rorug02G0405600 Rorug02G0405700
rosa_samantha	Rh2AG461500 Rh2AG461700 Rh2AG464500 Rh2BG477400 Rh2CG448600 Rh2CG448700 Rh2CG451100 Rh2CG451200 Rh2DG486200 Rh5AG501100
rosa_wichuraiana	Rw2G037860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	117
Acc36I	ACCTGC	1 cut(s)	117
AccII	CGCG	2 cut(s)	96, 375
AciI	CCGC	7 cut(s)	78, 189, 333, 375, 594, 620, 642
AclWI	GGATC	1 cut(s)	358
AcoI	YGGCCR	1 cut(s)	301
AcsI	RAATTY	2 cut(s)	157, 291
AcvI	CACGTG	1 cut(s)	325
AfaI	GTAC	3 cut(s)	173, 186, 257
AflII	CTTAAG	1 cut(s)	574
AflIII	ACRYGT	2 cut(s)	9, 94
AgsI	TTSAA	3 cut(s)	163, 296, 499
AjnI	CCWGG	1 cut(s)	462
AleI	CACNNNNGTG	1 cut(s)	149
AlwI	GGATC	1 cut(s)	358
AoxI	GGCC	1 cut(s)	301
ApeKI	GCWGC	2 cut(s)	44, 131
ApoI	RAATTY	2 cut(s)	157, 291
Asp700I	GAANNNNTTC	1 cut(s)	494
AspLEI	GCGC	1 cut(s)	119
AspS9I	GGNCC	1 cut(s)	269
AsuHPI	GGTGA	1 cut(s)	191
AvaII	GGWCC	1 cut(s)	269
BaeGI	GKGCMC	2 cut(s)	94, 264
BalI	TGGCCA	1 cut(s)	303
BarI	GAAGNNNNNNTAC	2 cut(s)	155, 187
BbrPI	CACGTG	1 cut(s)	325
BbvI	GCAGC	2 cut(s)	56, 118
BccI	CCATC	1 cut(s)	406
BciT130I	CCWGG	1 cut(s)	464
BfaI	CTAG	2 cut(s)	41, 591
BfmI	CTRYAG	2 cut(s)	550, 582
BfoI	RGCGCY	1 cut(s)	120
BfrI	CTTAAG	1 cut(s)	574
BfuAI	ACCTGC	1 cut(s)	117
BisI	GCNGC	4 cut(s)	45, 132, 376, 642
BlsI	GCNGC	4 cut(s)	46, 133, 377, 643
Bme1390I	CCNGG	1 cut(s)	464
Bme18I	GGWCC	1 cut(s)	269
BmgT120I	GGNCC	1 cut(s)	269
BmrFI	CCNGG	1 cut(s)	464
BmrI	ACTGGG	2 cut(s)	228, 409
BmsI	GCATC	3 cut(s)	27, 560, 628
BmuI	ACTGGG	2 cut(s)	228, 409
BsaAI	YACGTR	2 cut(s)	151, 325
BsaWI	WCCGGW	1 cut(s)	347
BsaXI	ACNNNNNCTCC	4 cut(s)	168, 186, 198, 216
Bse118I	RCCGGY	1 cut(s)	359
Bse1I	ACTGG	3 cut(s)	223, 304, 404
Bse3DI	GCAATG	2 cut(s)	54, 284
BseBI	CCWGG	1 cut(s)	464
BseGI	GGATG	2 cut(s)	18, 575
BseMI	GCAATG	2 cut(s)	54, 284
BseNI	ACTGG	3 cut(s)	223, 304, 404
BseSI	GKGCMC	2 cut(s)	94, 264
BseXI	GCAGC	2 cut(s)	56, 118
BsgI	GTGCAG	1 cut(s)	305
Bsh1236I	CGCG	2 cut(s)	96, 375
BshFI	GGCC	1 cut(s)	303
BsiSI	CCGG	2 cut(s)	348, 360
BslFI	GGGAC	1 cut(s)	416
BsmFI	GGGAC	1 cut(s)	416
BsnI	GGCC	1 cut(s)	303
Bsp1286I	GDGCHC	2 cut(s)	94, 264
Bsp143I	GATC	1 cut(s)	350
BspACI	CCGC	7 cut(s)	78, 189, 333, 375, 594, 620, 642
BspANI	GGCC	1 cut(s)	303
BspFNI	CGCG	2 cut(s)	96, 375
BspMI	ACCTGC	1 cut(s)	117
BspPI	GGATC	1 cut(s)	358
BspTI	CTTAAG	1 cut(s)	574
BsrDI	GCAATG	2 cut(s)	54, 284
BsrFI	RCCGGY	1 cut(s)	359
BsrI	ACTGG	3 cut(s)	223, 304, 404
BssAI	RCCGGY	1 cut(s)	359
BssMI	GATC	1 cut(s)	350
Bst2UI	CCWGG	1 cut(s)	464
Bst4CI	ACNGT	1 cut(s)	244
BstAFI	CTTAAG	1 cut(s)	574
BstBAI	YACGTR	2 cut(s)	151, 325
BstC8I	GCNNGC	1 cut(s)	94
BstF5I	GGATG	2 cut(s)	18, 575
BstFNI	CGCG	2 cut(s)	96, 375
BstH2I	RGCGCY	1 cut(s)	120
BstHHI	GCGC	1 cut(s)	119
BstKTI	GATC	1 cut(s)	353
BstMBI	GATC	1 cut(s)	350
BstMWI	GCNNNNNNNGC	3 cut(s)	98, 137, 647
BstNI	CCWGG	1 cut(s)	464
BstSCI	CCNGG	1 cut(s)	462
BstSFI	CTRYAG	2 cut(s)	550, 582
BstSLI	GKGCMC	2 cut(s)	94, 264
BstUI	CGCG	2 cut(s)	96, 375
BstV1I	GCAGC	2 cut(s)	56, 118
BstX2I	RGATCY	1 cut(s)	350
BstYI	RGATCY	1 cut(s)	350
BsuRI	GGCC	1 cut(s)	303
BtsCI	GGATG	2 cut(s)	18, 575
BtsIMutI	CAGTG	1 cut(s)	311
BveI	ACCTGC	1 cut(s)	117
Cac8I	GCNNGC	1 cut(s)	94
CfoI	GCGC	1 cut(s)	119
Cfr10I	RCCGGY	1 cut(s)	359
Cfr13I	GGNCC	1 cut(s)	269
CseI	GACGC	1 cut(s)	347
Csp6I	GTAC	3 cut(s)	172, 185, 256
CviAII	CATG	5 cut(s)	124, 409, 417, 504, 561
CviJI	RGCY	4 cut(s)	101, 131, 275, 303
CviKI_1	RGCY	4 cut(s)	101, 131, 275, 303
CviQI	GTAC	3 cut(s)	172, 185, 256
DpnI	GATC	1 cut(s)	352
DpnII	GATC	1 cut(s)	350
EaeI	YGGCCR	1 cut(s)	301
Eco47I	GGWCC	1 cut(s)	269
Eco72I	CACGTG	1 cut(s)	325
EcoRI	GAATTC	1 cut(s)	291
EcoRII	CCWGG	1 cut(s)	462
FaeI	CATG	5 cut(s)	127, 412, 420, 507, 564
FaqI	GGGAC	1 cut(s)	416
FatI	CATG	5 cut(s)	123, 408, 416, 503, 560
FauI	CCCGC	1 cut(s)	196
Fnu4HI	GCNGC	4 cut(s)	45, 132, 376, 642
FokI	GGATG	2 cut(s)	5, 582
Fsp4HI	GCNGC	4 cut(s)	45, 132, 376, 642
FspBI	CTAG	2 cut(s)	41, 591
GlaI	GCGC	1 cut(s)	118
GluI	GCNGC	4 cut(s)	45, 132, 376, 642
HaeII	RGCGCY	1 cut(s)	120
HaeIII	GGCC	1 cut(s)	303
HapII	CCGG	2 cut(s)	348, 360
HgaI	GACGC	1 cut(s)	347
HhaI	GCGC	1 cut(s)	119
Hin1II	CATG	5 cut(s)	127, 412, 420, 507, 564
Hin6I	GCGC	1 cut(s)	117
HinP1I	GCGC	1 cut(s)	117
HinfI	GANTC	1 cut(s)	32
HpaII	CCGG	2 cut(s)	348, 360
HphI	GGTGA	1 cut(s)	191
Hpy166II	GTNNAC	2 cut(s)	436, 490
Hpy8I	GTNNAC	2 cut(s)	436, 490
HpyAV	CCTTC	1 cut(s)	121
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4IV	ACGT	3 cut(s)	9, 150, 324
HpyCH4V	TGCA	4 cut(s)	112, 314, 322, 408
HpyF10VI	GCNNNNNNNGC	3 cut(s)	98, 137, 647
HpySE526I	ACGT	3 cut(s)	9, 150, 324
Hsp92II	CATG	5 cut(s)	127, 412, 420, 507, 564
HspAI	GCGC	1 cut(s)	117
Kzo9I	GATC	1 cut(s)	350
LmnI	GCTCC	1 cut(s)	346
Lsp1109I	GCAGC	2 cut(s)	56, 118
LweI	GCATC	3 cut(s)	27, 560, 628
MaeI	CTAG	2 cut(s)	41, 591
MaeII	ACGT	3 cut(s)	9, 150, 324
MaeIII	GTNAC	2 cut(s)	238, 422
MalI	GATC	1 cut(s)	352
MboI	GATC	1 cut(s)	350
MboII	GAAGA	2 cut(s)	175, 647
MflI	RGATCY	1 cut(s)	350
MhlI	GDGCHC	2 cut(s)	94, 264
MlsI	TGGCCA	1 cut(s)	303
MluCI	AATT	2 cut(s)	157, 291
MluI	ACGCGT	1 cut(s)	94
MluNI	TGGCCA	1 cut(s)	303
MlyI	GAGTC	1 cut(s)	26
MmeI	TCCRAC	1 cut(s)	368
MnlI	CCTC	4 cut(s)	170, 212, 469, 559
Mox20I	TGGCCA	1 cut(s)	303
MroXI	GAANNNNTTC	1 cut(s)	494
MscI	TGGCCA	1 cut(s)	303
MseI	TTAA	3 cut(s)	230, 246, 575
MslI	CAYNNNNRTG	1 cut(s)	149
Msp20I	TGGCCA	1 cut(s)	303
MspA1I	CMGCKG	1 cut(s)	335
MspCI	CTTAAG	1 cut(s)	574
MspI	CCGG	2 cut(s)	348, 360
MspR9I	CCNGG	1 cut(s)	464
MvaI	CCWGG	1 cut(s)	464
MvnI	CGCG	2 cut(s)	96, 375
MwoI	GCNNNNNNNGC	3 cut(s)	98, 137, 647
NdeII	GATC	1 cut(s)	350
NlaIII	CATG	5 cut(s)	127, 412, 420, 507, 564
OliI	CACNNNNGTG	1 cut(s)	149
PaqCI	CACCTGC	1 cut(s)	117
PdmI	GAANNNNTTC	1 cut(s)	494
PkrI	GCNGC	4 cut(s)	46, 133, 377, 643
PleI	GAGTC	1 cut(s)	26
PmaCI	CACGTG	1 cut(s)	325
PmlI	CACGTG	1 cut(s)	325
PpsI	GAGTC	1 cut(s)	26
Ppu21I	YACGTR	2 cut(s)	151, 325
Psp6I	CCWGG	1 cut(s)	462
PspCI	CACGTG	1 cut(s)	325
PspGI	CCWGG	1 cut(s)	462
PspPI	GGNCC	1 cut(s)	269
PsuI	RGATCY	1 cut(s)	350
RsaI	GTAC	3 cut(s)	173, 186, 257
RsaNI	GTAC	3 cut(s)	172, 185, 256
RseI	CAYNNNNRTG	1 cut(s)	149
SaqAI	TTAA	3 cut(s)	230, 246, 575
SatI	GCNGC	4 cut(s)	45, 132, 376, 642
Sau3AI	GATC	1 cut(s)	350
Sau96I	GGNCC	1 cut(s)	269
SchI	GAGTC	1 cut(s)	26
ScrFI	CCNGG	1 cut(s)	464
SduI	GDGCHC	2 cut(s)	94, 264
SetI	ASST	7 cut(s)	12, 111, 153, 181, 327, 468, 480
SfaNI	GCATC	3 cut(s)	27, 560, 628
SfcI	CTRYAG	2 cut(s)	550, 582
SinI	GGWCC	1 cut(s)	269
SmiMI	CAYNNNNRTG	1 cut(s)	149
SmlI	CTYRAG	1 cut(s)	574
SmoI	CTYRAG	1 cut(s)	574
Sse9I	AATT	2 cut(s)	157, 291
SsiI	CCGC	7 cut(s)	78, 189, 333, 375, 594, 620, 642
SspMI	CTAG	2 cut(s)	41, 591
StyD4I	CCNGG	1 cut(s)	462
TaaI	ACNGT	1 cut(s)	244
TaiI	ACGT	3 cut(s)	12, 153, 327
TaqI	TCGA	1 cut(s)	30
TasI	AATT	2 cut(s)	157, 291
TauI	GCSGC	2 cut(s)	378, 644
Tru1I	TTAA	3 cut(s)	230, 246, 575
Tru9I	TTAA	3 cut(s)	230, 246, 575
TscAI	CASTG	1 cut(s)	311
TseI	GCWGC	2 cut(s)	44, 131
TspDTI	ATGAA	1 cut(s)	140
TspGWI	ACGGA	1 cut(s)	189
TspRI	CASTG	1 cut(s)	311
Vha464I	CTTAAG	1 cut(s)	574
VpaK11BI	GGWCC	1 cut(s)	269
XapI	RAATTY	2 cut(s)	157, 291
XmnI	GAANNNNTTC	1 cut(s)	494
XspI	CTAG	2 cut(s)	41, 591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.