RLG00000020315

23 kDa jasmonate-induced protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001765
Physical Location & Seq
Reverse (-)
63619189 .. 63619764
576 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020315

Sequence Viewer

Length: 405 bp
ATGACTTTAGCTGGTAATAAAGATTGGGATGGCCACATTGGACAAGCCCCATACCCAATAGAAATTCAAAATGGCCAGTGGGGTGCATTTTTGCACGCCAAAGAATCTGGAGCGACAACTGGATCTGTGGCAGGTGTTGTGTATCGCGGCAAGGATCCGAAGGAAGGCAAGCCCTGCGACTACGCGTTGGCGTGGTCCAACTCAAGCGTGACATCGGTCTGGACGGAGGCCCGAGAAAATGACCACTACGGTCCTGATGCATGGGACTACATACGTAAAAAGCTTGGTGAGACTCGTTACTACTATCGTGAGACATGGCAGGGATGCTTGTCAACTATAACAACTGGTAGTGACACTTCACCAGTTGTGGAAGCAACATTCACTTCATATGTCGCCAATGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

14.78

Weight (kDa)

5.27

Isoelectric Point (pI)

23.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nakanori PF21230 2 - 116 1.4e-24 Nakanori-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 122
Acc36I ACCTGC 1 cut(s) 122
AccII CGCG 2 cut(s) 147, 185
AciI CCGC 1 cut(s) 147
AclWI GGATC 3 cut(s) 130, 149, 162
AcoI YGGCCR 2 cut(s) 31, 73
AcsI RAATTY 1 cut(s) 63
AfiI CCNNNNNNNGG 1 cut(s) 164
AflIII ACRYGT 1 cut(s) 183
AgsI TTSAA 1 cut(s) 68
AluBI AGCT 2 cut(s) 11, 283
AluI AGCT 2 cut(s) 11, 283
Alw26I GTCTC 2 cut(s) 284, 305
AlwI GGATC 3 cut(s) 130, 149, 162
Ama87I CYCGRG 1 cut(s) 231
AoxI GGCC 3 cut(s) 31, 73, 228
ApoI RAATTY 1 cut(s) 63
AspS9I GGNCC 3 cut(s) 195, 229, 251
AsuHPI GGTGA 2 cut(s) 299, 351
AvaI CYCGRG 1 cut(s) 231
AvaII GGWCC 2 cut(s) 195, 251
BalI TGGCCA 2 cut(s) 33, 75
BamHI GGATCC 1 cut(s) 154
BarI GAAGNNNNNNTAC 2 cut(s) 340, 372
BccI CCATC 1 cut(s) 23
BcoDI GTCTC 2 cut(s) 284, 305
BfuAI ACCTGC 1 cut(s) 122
BisI GCNGC 1 cut(s) 148
BlsI GCNGC 1 cut(s) 149
Bme18I GGWCC 2 cut(s) 195, 251
BmeT110I CYCGRG 1 cut(s) 231
BmgT120I GGNCC 3 cut(s) 195, 229, 251
BmiI GGNNCC 1 cut(s) 156
BmsI GCATC 2 cut(s) 247, 314
BoxI GACNNNNGTC 1 cut(s) 215
BpmI CTGGAG 1 cut(s) 129
BpuEI CTTGAG 1 cut(s) 187
BsaAI YACGTR 1 cut(s) 275
Bsc4I CCNNNNNNNGG 1 cut(s) 164
Bse1I ACTGG 4 cut(s) 76, 124, 349, 362
BseGI GGATG 2 cut(s) 34, 329
BseLI CCNNNNNNNGG 1 cut(s) 164
BseNI ACTGG 4 cut(s) 76, 124, 349, 362
Bsh1236I CGCG 2 cut(s) 147, 185
BshFI GGCC 3 cut(s) 33, 75, 230
BsiHKCI CYCGRG 1 cut(s) 231
BslFI GGGAC 1 cut(s) 278
BslI CCNNNNNNNGG 1 cut(s) 164
BsmAI GTCTC 2 cut(s) 284, 305
BsmFI GGGAC 1 cut(s) 278
BsnI GGCC 3 cut(s) 33, 75, 230
BsoBI CYCGRG 1 cut(s) 231
Bsp143I GATC 2 cut(s) 122, 154
BspACI CCGC 1 cut(s) 147
BspANI GGCC 3 cut(s) 33, 75, 230
BspFNI CGCG 2 cut(s) 147, 185
BspLI GGNNCC 1 cut(s) 156
BspMI ACCTGC 1 cut(s) 122
BspPI GGATC 3 cut(s) 130, 149, 162
BsrI ACTGG 4 cut(s) 76, 124, 349, 362
BssMI GATC 2 cut(s) 122, 154
Bst4CI ACNGT 1 cut(s) 251
BstAPI GCANNNNNTGC 1 cut(s) 174
BstBAI YACGTR 1 cut(s) 275
BstC8I GCNNGC 2 cut(s) 96, 170
BstF5I GGATG 2 cut(s) 34, 329
BstFNI CGCG 2 cut(s) 147, 185
BstKTI GATC 2 cut(s) 125, 157
BstMAI GTCTC 2 cut(s) 284, 305
BstMBI GATC 2 cut(s) 122, 154
BstMWI GCNNNNNNNGC 1 cut(s) 174
BstPAI GACNNNNGTC 1 cut(s) 215
BstSNI TACGTA 1 cut(s) 275
BstUI CGCG 2 cut(s) 147, 185
BstX2I RGATCY 2 cut(s) 122, 154
BstYI RGATCY 2 cut(s) 122, 154
BsuRI GGCC 3 cut(s) 33, 75, 230
BtsCI GGATG 2 cut(s) 34, 329
BtsIMutI CAGTG 1 cut(s) 83
BveI ACCTGC 1 cut(s) 122
Cac8I GCNNGC 2 cut(s) 96, 170
Cfr13I GGNCC 3 cut(s) 195, 229, 251
CviAII CATG 2 cut(s) 261, 315
CviJI RGCY 7 cut(s) 11, 33, 47, 75, 172, 230, 283
CviKI_1 RGCY 7 cut(s) 11, 33, 47, 75, 172, 230, 283
DpnI GATC 2 cut(s) 124, 156
DpnII GATC 2 cut(s) 122, 154
EaeI YGGCCR 2 cut(s) 31, 73
Eco105I TACGTA 1 cut(s) 275
Eco47I GGWCC 2 cut(s) 195, 251
Eco88I CYCGRG 1 cut(s) 231
EcoT22I ATGCAT 1 cut(s) 262
FaeI CATG 2 cut(s) 264, 318
FaiI YATR 7 cut(s) 52, 262, 272, 316, 338, 388, 390
FaqI GGGAC 1 cut(s) 278
FatI CATG 2 cut(s) 260, 314
FauNDI CATATG 1 cut(s) 388
Fnu4HI GCNGC 1 cut(s) 148
FokI GGATG 2 cut(s) 41, 336
Fsp4HI GCNGC 1 cut(s) 148
GluI GCNGC 1 cut(s) 148
GsuI CTGGAG 1 cut(s) 129
HaeIII GGCC 3 cut(s) 33, 75, 230
Hin1II CATG 2 cut(s) 264, 318
HincII GTYRAC 1 cut(s) 333
HindII GTYRAC 1 cut(s) 333
HindIII AAGCTT 1 cut(s) 281
HinfI GANTC 2 cut(s) 104, 292
HphI GGTGA 2 cut(s) 299, 351
Hpy166II GTNNAC 1 cut(s) 333
Hpy188I TCNGA 1 cut(s) 159
Hpy188III TCNNGA 4 cut(s) 108, 220, 254, 308
Hpy8I GTNNAC 1 cut(s) 333
HpyAV CCTTC 2 cut(s) 154, 158
HpyCH4III ACNGT 1 cut(s) 251
HpyCH4IV ACGT 1 cut(s) 274
HpyCH4V TGCA 3 cut(s) 86, 94, 260
HpyF10VI GCNNNNNNNGC 1 cut(s) 174
HpySE526I ACGT 1 cut(s) 274
Hsp92II CATG 2 cut(s) 264, 318
Kzo9I GATC 2 cut(s) 122, 154
LmnI GCTCC 1 cut(s) 110
LweI GCATC 2 cut(s) 247, 314
MaeII ACGT 1 cut(s) 274
MaeIII GTNAC 3 cut(s) 208, 296, 350
MalI GATC 2 cut(s) 124, 156
MboI GATC 2 cut(s) 122, 154
MflI RGATCY 2 cut(s) 122, 154
MlsI TGGCCA 2 cut(s) 33, 75
MluCI AATT 1 cut(s) 63
MluI ACGCGT 1 cut(s) 183
MluNI TGGCCA 2 cut(s) 33, 75
MlyI GAGTC 1 cut(s) 286
MmeI TCCRAC 1 cut(s) 222
MnlI CCTC 1 cut(s) 220
Mox20I TGGCCA 2 cut(s) 33, 75
Mph1103I ATGCAT 1 cut(s) 262
MscI TGGCCA 2 cut(s) 33, 75
Msp20I TGGCCA 2 cut(s) 33, 75
MvnI CGCG 2 cut(s) 147, 185
MwoI GCNNNNNNNGC 1 cut(s) 174
NdeI CATATG 1 cut(s) 388
NdeII GATC 2 cut(s) 122, 154
NlaIII CATG 2 cut(s) 264, 318
NlaIV GGNNCC 1 cut(s) 156
NmuCI GTSAC 2 cut(s) 208, 350
NsiI ATGCAT 1 cut(s) 262
PaqCI CACCTGC 1 cut(s) 122
PfeI GAWTC 1 cut(s) 104
PkrI GCNGC 1 cut(s) 149
PleI GAGTC 1 cut(s) 286
PpsI GAGTC 1 cut(s) 286
Ppu21I YACGTR 1 cut(s) 275
PshAI GACNNNNGTC 1 cut(s) 215
PspN4I GGNNCC 1 cut(s) 156
PspPI GGNCC 3 cut(s) 195, 229, 251
PsuI RGATCY 2 cut(s) 122, 154
SatI GCNGC 1 cut(s) 148
Sau3AI GATC 2 cut(s) 122, 154
Sau96I GGNCC 3 cut(s) 195, 229, 251
SchI GAGTC 1 cut(s) 286
SetI ASST 4 cut(s) 13, 136, 277, 285
SfaNI GCATC 2 cut(s) 247, 314
SinI GGWCC 2 cut(s) 195, 251
SmlI CTYRAG 1 cut(s) 202
SmoI CTYRAG 1 cut(s) 202
SnaBI TACGTA 1 cut(s) 275
Sse9I AATT 1 cut(s) 63
SsiI CCGC 1 cut(s) 147
TaaI ACNGT 1 cut(s) 251
TaiI ACGT 1 cut(s) 277
TaqII GACCGA 1 cut(s) 205
TasI AATT 1 cut(s) 63
TauI GCSGC 1 cut(s) 150
TfiI GAWTC 1 cut(s) 104
TscAI CASTG 1 cut(s) 83
TseFI GTSAC 2 cut(s) 208, 350
Tsp45I GTSAC 2 cut(s) 208, 350
TspDTI ATGAA 1 cut(s) 375
TspGWI ACGGA 1 cut(s) 239
TspRI CASTG 1 cut(s) 83
VpaK11BI GGWCC 2 cut(s) 195, 251
XapI RAATTY 1 cut(s) 63
Zsp2I ATGCAT 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.