Rmu_sc0001516.1_g000044

23 kDa jasmonate-induced protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001516.1
OG0001765
Physical Location & Seq
Reverse (-)
169387 .. 169752
366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001516.1_g000044.1.cds

Sequence Viewer

Length: 366 bp
atggcaattaacatgaaaaatgccgacatgaaggatatgaacgcccacacttacgtggagaatctgaagaaacagtggggaactgaaatatccacactttgcctcatttacaatgctactgggtacactatgatgttggttggtagtaaagataggagtgggcacattggacaagtcccatacccaatagtaattcaaaatggccagtgtggtgcgtttttgcatgtcggaggctcttatggatctatggcaggtgttgtgtatcgcggcaagacggaaagatgggcaacgactgtgactacatcatggcttggtccaacacacggagtagaggagtatttgacacaccagatgaccactctgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.36

Weight (kDa)

7.82

Isoelectric Point (pI)

19.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 242
Acc36I ACCTGC 1 cut(s) 242
AccII CGCG 1 cut(s) 267
AciI CCGC 1 cut(s) 267
AclWI GGATC 1 cut(s) 250
AcoI YGGCCR 1 cut(s) 202
AcuI CTGAAG 1 cut(s) 86
AfaI GTAC 1 cut(s) 125
AfiI CCNNNNNNNGG 1 cut(s) 323
AgsI TTSAA 1 cut(s) 197
AleI CACNNNNGTG 1 cut(s) 53
AlwI GGATC 1 cut(s) 250
AoxI GGCC 1 cut(s) 202
AspS9I GGNCC 1 cut(s) 314
AvaII GGWCC 1 cut(s) 314
BaeGI GKGCMC 1 cut(s) 165
BalI TGGCCA 1 cut(s) 204
BccI CCATC 1 cut(s) 276
BfuAI ACCTGC 1 cut(s) 242
BisI GCNGC 1 cut(s) 268
BlsI GCNGC 1 cut(s) 269
Bme18I GGWCC 1 cut(s) 314
BmgT120I GGNCC 1 cut(s) 314
BmrI ACTGGG 1 cut(s) 129
BmuI ACTGGG 1 cut(s) 129
BsaAI YACGTR 1 cut(s) 55
Bsc4I CCNNNNNNNGG 1 cut(s) 323
Bse1I ACTGG 2 cut(s) 124, 205
BseLI CCNNNNNNNGG 1 cut(s) 323
BseNI ACTGG 2 cut(s) 124, 205
BseRI GAGGAG 1 cut(s) 347
BseSI GKGCMC 1 cut(s) 165
Bsh1236I CGCG 1 cut(s) 267
BshFI GGCC 1 cut(s) 204
BslFI GGGAC 1 cut(s) 161
BslI CCNNNNNNNGG 1 cut(s) 323
BsmFI GGGAC 1 cut(s) 161
BsnI GGCC 1 cut(s) 204
Bsp1286I GDGCHC 1 cut(s) 165
Bsp143I GATC 1 cut(s) 242
BspACI CCGC 1 cut(s) 267
BspANI GGCC 1 cut(s) 204
BspFNI CGCG 1 cut(s) 267
BspMI ACCTGC 1 cut(s) 242
BspPI GGATC 1 cut(s) 250
BsrI ACTGG 2 cut(s) 124, 205
BssMI GATC 1 cut(s) 242
Bst4CI ACNGT 2 cut(s) 75, 295
BstBAI YACGTR 1 cut(s) 55
BstFNI CGCG 1 cut(s) 267
BstKTI GATC 1 cut(s) 245
BstMBI GATC 1 cut(s) 242
BstNSI RCATGY 1 cut(s) 227
BstSLI GKGCMC 1 cut(s) 165
BstUI CGCG 1 cut(s) 267
BstX2I RGATCY 1 cut(s) 242
BstYI RGATCY 1 cut(s) 242
BsuRI GGCC 1 cut(s) 204
BtsIMutI CAGTG 2 cut(s) 80, 212
BveI ACCTGC 1 cut(s) 242
Cfr13I GGNCC 1 cut(s) 314
Csp6I GTAC 1 cut(s) 124
CviAII CATG 4 cut(s) 13, 28, 224, 306
CviJI RGCY 3 cut(s) 204, 234, 310
CviKI_1 RGCY 3 cut(s) 204, 234, 310
CviQI GTAC 1 cut(s) 124
DpnI GATC 1 cut(s) 244
DpnII GATC 1 cut(s) 242
EaeI YGGCCR 1 cut(s) 202
Eco47I GGWCC 1 cut(s) 314
Eco57I CTGAAG 1 cut(s) 86
FaeI CATG 4 cut(s) 16, 31, 227, 309
FaiI YATR 9 cut(s) 14, 29, 38, 131, 181, 225, 240, 248, 307
FaqI GGGAC 1 cut(s) 161
FatI CATG 4 cut(s) 12, 27, 223, 305
Fnu4HI GCNGC 1 cut(s) 268
Fsp4HI GCNGC 1 cut(s) 268
GluI GCNGC 1 cut(s) 268
HaeIII GGCC 1 cut(s) 204
Hin1II CATG 4 cut(s) 16, 31, 227, 309
HinfI GANTC 1 cut(s) 61
Hpy166II GTNNAC 1 cut(s) 126
Hpy188I TCNGA 2 cut(s) 66, 230
Hpy8I GTNNAC 1 cut(s) 126
HpyAV CCTTC 1 cut(s) 25
HpyCH4III ACNGT 2 cut(s) 75, 295
HpyCH4IV ACGT 1 cut(s) 54
HpyCH4V TGCA 1 cut(s) 223
HpySE526I ACGT 1 cut(s) 54
Hsp92II CATG 4 cut(s) 16, 31, 227, 309
Kzo9I GATC 1 cut(s) 242
LpnPI CCDG 4 cut(s) 105, 218, 237, 362
MaeII ACGT 1 cut(s) 54
MaeIII GTNAC 1 cut(s) 295
MalI GATC 1 cut(s) 244
MboI GATC 1 cut(s) 242
MboII GAAGA 1 cut(s) 79
MflI RGATCY 1 cut(s) 242
MhlI GDGCHC 1 cut(s) 165
MlsI TGGCCA 1 cut(s) 204
MluCI AATT 2 cut(s) 6, 192
MluNI TGGCCA 1 cut(s) 204
MmeI TCCRAC 2 cut(s) 208, 341
MnlI CCTC 3 cut(s) 113, 224, 325
Mox20I TGGCCA 1 cut(s) 204
MscI TGGCCA 1 cut(s) 204
MseI TTAA 1 cut(s) 9
MslI CAYNNNNRTG 2 cut(s) 53, 131
Msp20I TGGCCA 1 cut(s) 204
MvnI CGCG 1 cut(s) 267
NdeII GATC 1 cut(s) 242
NlaIII CATG 4 cut(s) 16, 31, 227, 309
NmuCI GTSAC 1 cut(s) 295
NspI RCATGY 1 cut(s) 227
OliI CACNNNNGTG 1 cut(s) 53
PaqCI CACCTGC 1 cut(s) 242
PfeI GAWTC 1 cut(s) 61
PkrI GCNGC 1 cut(s) 269
Ppu21I YACGTR 1 cut(s) 55
PspPI GGNCC 1 cut(s) 314
PsuI RGATCY 1 cut(s) 242
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
RseI CAYNNNNRTG 2 cut(s) 53, 131
SaqAI TTAA 1 cut(s) 9
SatI GCNGC 1 cut(s) 268
Sau3AI GATC 1 cut(s) 242
Sau96I GGNCC 1 cut(s) 314
SduI GDGCHC 1 cut(s) 165
SetI ASST 2 cut(s) 57, 256
SinI GGWCC 1 cut(s) 314
SmiMI CAYNNNNRTG 2 cut(s) 53, 131
Sse9I AATT 2 cut(s) 6, 192
SsiI CCGC 1 cut(s) 267
TaaI ACNGT 2 cut(s) 75, 295
TaiI ACGT 1 cut(s) 57
TasI AATT 2 cut(s) 6, 192
TauI GCSGC 1 cut(s) 270
TfiI GAWTC 1 cut(s) 61
Tru1I TTAA 1 cut(s) 9
Tru9I TTAA 1 cut(s) 9
TscAI CASTG 2 cut(s) 80, 212
TseFI GTSAC 1 cut(s) 295
Tsp45I GTSAC 1 cut(s) 295
TspDTI ATGAA 3 cut(s) 29, 44, 53
TspGWI ACGGA 2 cut(s) 290, 339
TspRI CASTG 2 cut(s) 80, 212
VpaK11BI GGWCC 1 cut(s) 314
XceI RCATGY 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.