MD09G1162600.v1.1

23 kDa jasmonate-induced protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0001765
Physical Location & Seq
Reverse (-)
13211209 .. 13215313
4105 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1162600.v1.1.491

Sequence Viewer

Length: 1278 bp
ATGGCGTATAACGTTTTTGGTAACCCCATCACGGATGAAACTTTGAAGGGGATGCCAGAGTATGCCGACAAGCAAATAGGAAGATTAGCCAAGGCATATGTGGCGTTGAATGTGAAAAATGCCGCGGAGAAGGGCTTCAAGGCTCGAACACATGTGGAGAAACTGAAGGAGCAGTATGGCGACGGAGTCTCCACACTCTGCCTTGTTTACAATGCAACTGGGCACACCATAAGATATGTTTATAAGAAAGATTGGTATGGGCACATCGGGAAGGCACCATACCCACCACTGATTGCAAATGGTCAGTGGGGTGCGTTTCTGCACGTCAAAACTGCTGGAGAGTCTTCTGGATCCAATGCTGCTGTTGTATACCGAGGCCTAAATATTGTTAACGAGGAATGCGACTGGATGTTGTCTTGGAGCAACCCCTGGGACAGGACTAAATCGGACAACACGGTCTATACAGAGGTTCGCAAAGCTGGCCACTTTGATACTGCTTGGGACGAAATCTATAAAAACTTGGACAATGTTCAAGAGAACATAAAGCACGCATCGAATGGATGCGTGTCAATCATGTCAACTGGCAGTGGCACTTCCCCAATTGTTGAAGCAATACTCACTTTAGACCTTCCCGTAGAGATGGTCAATAACGTTTTTGGCAACCCCATCACCGATGAAACTTTGAAGGGGATGCCGGAGTATGACGGCAAGGAAATAACAAGATTAGACAGGGCACGCGTGGCATTTAATATGAAATATGTCGGGGAGAAGAGCCTCGACGCTCGAACATATGTGGAGAATCTGAAGAGGGAGTATGGCCTCGGAATCTCCACACTCTGCCTTGTTTACAACGCAACTGGGTACATGATAAAATTTCATGCTAGGAACGATTGGCATGGGCACATCGGAAAGGCACCATACCCAGATGTGATTTTAAATGGTCAGTGGGGTGCGTTTCTGCACGTCCAAACTGCCGGAGAGTCTTCTGGATCTAATGCTGCTGTTGTGTACCGAGGCCTAAATAATGTTAGCGATGAATGCGACTGGATGTTGTCTTGGAGAAACAGGACTGGCACTGACACCACGGTCCATACAGAAGTTCGCAGAGCTGGCGACTTCGATGCTGCTTGGGACGAAATCTCTACACACTTCGGAATGGCGTCCACAACGCACATATCGAATGGATGGGTGTCAATCATGTCAATCATGTCAATCATTTCAACTGGCAATGGCCCTTCCCCAATTGTTGAAGCAATACTCACTTTAGAAAATGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

426

Amino Acids

47.12

Weight (kDa)

5.92

Isoelectric Point (pI)

29.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nakanori PF21230 33 - 195 1.1e-45 Nakanori-like protein
Nakanori PF21230 245 - 405 2.6e-41 Nakanori-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 243
AasI GACNNNNNNGTC 2 cut(s) 455, 1085
AccB1I GGYRCC 2 cut(s) 274, 913
AccI GTMKAC 1 cut(s) 369
AccII CGCG 2 cut(s) 125, 738
AciI CCGC 2 cut(s) 123, 125
AclI AACGTT 2 cut(s) 12, 651
AclWI GGATC 3 cut(s) 345, 358, 997
AcoI YGGCCR 1 cut(s) 481
AcsI RAATTY 1 cut(s) 872
AcuI CTGAAG 2 cut(s) 185, 824
AcyI GRCGYC 1 cut(s) 1160
AfaI GTAC 2 cut(s) 863, 1010
AfiI CCNNNNNNNGG 2 cut(s) 31, 435
AflIII ACRYGT 2 cut(s) 151, 736
AgsI TTSAA 8 cut(s) 46, 109, 139, 533, 608, 685, 1221, 1250
AjiI CACGTC 2 cut(s) 325, 964
AjnI CCWGG 1 cut(s) 428
AluBI AGCT 2 cut(s) 479, 1109
AluI AGCT 2 cut(s) 479, 1109
Alw26I GTCTC 1 cut(s) 193
AlwI GGATC 3 cut(s) 345, 358, 997
AoxI GGCC 5 cut(s) 376, 481, 817, 1015, 1231
ApeKI GCWGC 3 cut(s) 359, 998, 1124
ApoI RAATTY 1 cut(s) 872
Asp700I GAANNNNTTC 1 cut(s) 134
AspS9I GGNCC 2 cut(s) 1087, 1232
AsuHPI GGTGA 1 cut(s) 661
AvaII GGWCC 1 cut(s) 1087
BaeGI GKGCMC 4 cut(s) 225, 264, 736, 903
BalI TGGCCA 1 cut(s) 483
BamHI GGATCC 1 cut(s) 350
BanI GGYRCC 2 cut(s) 274, 913
BarI GAAGNNNNNNTAC 2 cut(s) 263, 295
BbsI GAAGAC 2 cut(s) 336, 975
BbvI GCAGC 3 cut(s) 346, 985, 1111
BccI CCATC 4 cut(s) 35, 634, 674, 1179
BceAI ACGGC 1 cut(s) 721
BcgI CGANNNNNNTGC 2 cut(s) 1103, 1137
BciT130I CCWGG 1 cut(s) 430
BcoDI GTCTC 1 cut(s) 193
BfaI CTAG 1 cut(s) 882
BisI GCNGC 4 cut(s) 123, 360, 999, 1125
BlsI GCNGC 4 cut(s) 124, 361, 1000, 1126
Bme1390I CCNGG 1 cut(s) 430
Bme18I GGWCC 1 cut(s) 1087
BmgBI CACGTC 2 cut(s) 325, 964
BmgT120I GGNCC 2 cut(s) 1087, 1232
BmiI GGNNCC 3 cut(s) 276, 352, 915
BmrFI CCNGG 1 cut(s) 430
BmrI ACTGGG 2 cut(s) 228, 867
BmsI GCATC 5 cut(s) 42, 551, 560, 681, 1111
BmuI ACTGGG 2 cut(s) 228, 867
BpiI GAAGAC 2 cut(s) 336, 975
BpmI CTGGAG 1 cut(s) 357
BsaHI GRCGYC 1 cut(s) 1160
BsaJI CCNNGG 8 cut(s) 90, 123, 373, 428, 429, 820, 1012, 1083
BsaXI ACNNNNNCTCC 2 cut(s) 173, 203
Bsc4I CCNNNNNNNGG 2 cut(s) 31, 435
Bse1I ACTGG 7 cut(s) 223, 410, 586, 862, 1049, 1075, 1228
Bse3DI GCAATG 1 cut(s) 1234
BseBI CCWGG 1 cut(s) 430
BseDI CCNNGG 8 cut(s) 90, 123, 373, 428, 429, 820, 1012, 1083
BseGI GGATG 7 cut(s) 40, 57, 414, 566, 696, 1053, 1190
BseLI CCNNNNNNNGG 2 cut(s) 31, 435
BseMI GCAATG 1 cut(s) 1234
BseNI ACTGG 7 cut(s) 223, 410, 586, 862, 1049, 1075, 1228
BseSI GKGCMC 4 cut(s) 225, 264, 736, 903
BseXI GCAGC 3 cut(s) 346, 985, 1111
BsgI GTGCAG 2 cut(s) 305, 944
Bsh1236I CGCG 2 cut(s) 125, 738
BshFI GGCC 5 cut(s) 378, 483, 819, 1017, 1233
BshNI GGYRCC 2 cut(s) 274, 913
BsiSI CCGG 2 cut(s) 695, 975
BslFI GGGAC 3 cut(s) 446, 515, 1145
BslI CCNNNNNNNGG 2 cut(s) 31, 435
BsmAI GTCTC 1 cut(s) 193
BsmFI GGGAC 3 cut(s) 446, 515, 1145
BsmI GAATGC 2 cut(s) 404, 1043
BsnI GGCC 5 cut(s) 378, 483, 819, 1017, 1233
Bsp1286I GDGCHC 4 cut(s) 225, 264, 736, 903
Bsp143I GATC 2 cut(s) 350, 989
BspACI CCGC 2 cut(s) 123, 125
BspANI GGCC 5 cut(s) 378, 483, 819, 1017, 1233
BspFNI CGCG 2 cut(s) 125, 738
BspLI GGNNCC 3 cut(s) 276, 352, 915
BspPI GGATC 3 cut(s) 345, 358, 997
BspQI GCTCTTC 1 cut(s) 764
BspT107I GGYRCC 2 cut(s) 274, 913
BsrDI GCAATG 1 cut(s) 1234
BsrI ACTGG 7 cut(s) 223, 410, 586, 862, 1049, 1075, 1228
BssECI CCNNGG 8 cut(s) 90, 123, 373, 428, 429, 820, 1012, 1083
BssMI GATC 2 cut(s) 350, 989
BssNAI GTATAC 1 cut(s) 370
BssNI GRCGYC 1 cut(s) 1160
BssT1I CCWWGG 1 cut(s) 90
Bst1107I GTATAC 1 cut(s) 370
Bst2UI CCWGG 1 cut(s) 430
Bst4CI ACNGT 2 cut(s) 457, 1087
Bst6I CTCTTC 2 cut(s) 764, 800
BstACI GRCGYC 1 cut(s) 1160
BstC8I GCNNGC 4 cut(s) 481, 549, 736, 1111
BstDSI CCRYGG 2 cut(s) 123, 1083
BstEII GGTNACC 1 cut(s) 20
BstENI CCTNNNNNAGG 1 cut(s) 433
BstF5I GGATG 7 cut(s) 40, 57, 414, 566, 696, 1053, 1190
BstFNI CGCG 2 cut(s) 125, 738
BstKTI GATC 2 cut(s) 353, 992
BstMAI GTCTC 1 cut(s) 193
BstMBI GATC 2 cut(s) 350, 989
BstMWI GCNNNNNNNGC 5 cut(s) 101, 480, 740, 1038, 1110
BstNI CCWGG 1 cut(s) 430
BstNSI RCATGY 1 cut(s) 155
BstPI GGTNACC 1 cut(s) 20
BstSCI CCNGG 1 cut(s) 428
BstSLI GKGCMC 4 cut(s) 225, 264, 736, 903
BstUI CGCG 2 cut(s) 125, 738
BstV1I GCAGC 3 cut(s) 346, 985, 1111
BstV2I GAAGAC 2 cut(s) 336, 975
BstX2I RGATCY 2 cut(s) 350, 989
BstYI RGATCY 2 cut(s) 350, 989
BstZ17I GTATAC 1 cut(s) 370
BsuRI GGCC 5 cut(s) 378, 483, 819, 1017, 1233
BtgI CCRYGG 2 cut(s) 123, 1083
BtgZI GCGATG 1 cut(s) 1047
BtrI CACGTC 2 cut(s) 325, 964
BtsCI GGATG 7 cut(s) 40, 57, 414, 566, 696, 1053, 1190
BtsI GCAGTG 1 cut(s) 592
BtsIMutI CAGTG 5 cut(s) 287, 311, 592, 950, 1074
Cac8I GCNNGC 4 cut(s) 481, 549, 736, 1111
Cfr13I GGNCC 2 cut(s) 1087, 1232
Cfr42I CCGCGG 1 cut(s) 126
CseI GACGC 2 cut(s) 788, 1149
Csp6I GTAC 2 cut(s) 862, 1009
CviAII CATG 7 cut(s) 152, 574, 865, 878, 896, 1198, 1207
CviQI GTAC 2 cut(s) 862, 1009
DpnI GATC 2 cut(s) 352, 991
DpnII GATC 2 cut(s) 350, 989
DraI TTTAAA 1 cut(s) 936
DrdI GACNNNNNNGTC 2 cut(s) 455, 1085
DseDI GACNNNNNNGTC 2 cut(s) 455, 1085
EaeI YGGCCR 1 cut(s) 481
Eam1104I CTCTTC 2 cut(s) 764, 800
EarI CTCTTC 2 cut(s) 764, 800
Eco130I CCWWGG 1 cut(s) 90
Eco147I AGGCCT 2 cut(s) 378, 1017
Eco47I GGWCC 1 cut(s) 1087
Eco57I CTGAAG 2 cut(s) 185, 824
Eco91I GGTNACC 1 cut(s) 20
EcoNI CCTNNNNNAGG 1 cut(s) 433
EcoO65I GGTNACC 1 cut(s) 20
EcoRII CCWGG 1 cut(s) 428
EcoT14I CCWWGG 1 cut(s) 90
ErhI CCWWGG 1 cut(s) 90
FaeI CATG 7 cut(s) 155, 577, 868, 881, 899, 1201, 1210
FaqI GGGAC 3 cut(s) 446, 515, 1145
FatI CATG 7 cut(s) 151, 573, 864, 877, 895, 1197, 1206
FauNDI CATATG 2 cut(s) 97, 790
FblI GTMKAC 1 cut(s) 369
Fnu4HI GCNGC 4 cut(s) 123, 360, 999, 1125
FokI GGATG 7 cut(s) 47, 64, 421, 573, 703, 1060, 1197
Fsp4HI GCNGC 4 cut(s) 123, 360, 999, 1125
FspBI CTAG 1 cut(s) 882
GluI GCNGC 4 cut(s) 123, 360, 999, 1125
GsuI CTGGAG 1 cut(s) 357
HaeIII GGCC 5 cut(s) 378, 483, 819, 1017, 1233
HapII CCGG 2 cut(s) 695, 975
HgaI GACGC 2 cut(s) 788, 1149
Hin1I GRCGYC 1 cut(s) 1160
Hin1II CATG 7 cut(s) 155, 577, 868, 881, 899, 1201, 1210
HincII GTYRAC 2 cut(s) 391, 579
HindII GTYRAC 2 cut(s) 391, 579
HinfI GANTC 5 cut(s) 186, 341, 799, 825, 980
HpaI GTTAAC 1 cut(s) 391
HpaII CCGG 2 cut(s) 695, 975
HphI GGTGA 1 cut(s) 661
Hpy166II GTNNAC 7 cut(s) 208, 370, 391, 579, 847, 1009, 1164
Hpy188I TCNGA 5 cut(s) 448, 804, 824, 908, 1154
Hpy188III TCNNGA 4 cut(s) 268, 348, 533, 987
Hpy8I GTNNAC 7 cut(s) 208, 370, 391, 579, 847, 1009, 1164
Hpy99I CGWCG 2 cut(s) 185, 782
HpyAV CCTTC 7 cut(s) 40, 124, 160, 265, 638, 679, 1245
HpyCH4III ACNGT 2 cut(s) 457, 1087
HpyCH4IV ACGT 4 cut(s) 12, 324, 651, 963
HpyCH4V TGCA 4 cut(s) 215, 296, 322, 961
HpyF10VI GCNNNNNNNGC 5 cut(s) 101, 480, 740, 1038, 1110
HpySE526I ACGT 4 cut(s) 12, 324, 651, 963
Hsp92I GRCGYC 1 cut(s) 1160
Hsp92II CATG 7 cut(s) 155, 577, 868, 881, 899, 1201, 1210
KspAI GTTAAC 1 cut(s) 391
KspI CCGCGG 1 cut(s) 126
Kzo9I GATC 2 cut(s) 350, 989
LguI GCTCTTC 1 cut(s) 764
LmnI GCTCC 2 cut(s) 169, 420
Lsp1109I GCAGC 3 cut(s) 346, 985, 1111
LweI GCATC 5 cut(s) 42, 551, 560, 681, 1111
MaeI CTAG 1 cut(s) 882
MaeII ACGT 4 cut(s) 12, 324, 651, 963
MaeIII GTNAC 1 cut(s) 20
MalI GATC 2 cut(s) 352, 991
MboI GATC 2 cut(s) 350, 989
MboII GAAGA 5 cut(s) 93, 336, 781, 817, 975
MfeI CAATTG 2 cut(s) 600, 1242
MflI RGATCY 2 cut(s) 350, 989
MhlI GDGCHC 4 cut(s) 225, 264, 736, 903
MlsI TGGCCA 1 cut(s) 483
MluCI AATT 3 cut(s) 600, 872, 1242
MluI ACGCGT 1 cut(s) 736
MluNI TGGCCA 1 cut(s) 483
MlyI GAGTC 3 cut(s) 195, 350, 989
MnlI CCTC 7 cut(s) 368, 388, 460, 785, 801, 830, 1007
Mox20I TGGCCA 1 cut(s) 483
MroXI GAANNNNTTC 1 cut(s) 134
MscI TGGCCA 1 cut(s) 483
MseI TTAA 4 cut(s) 390, 747, 935, 1276
Msp20I TGGCCA 1 cut(s) 483
MspA1I CMGCKG 1 cut(s) 125
MspI CCGG 2 cut(s) 695, 975
MspR9I CCNGG 1 cut(s) 430
MunI CAATTG 2 cut(s) 600, 1242
Mva1269I GAATGC 2 cut(s) 404, 1043
MvaI CCWGG 1 cut(s) 430
MvnI CGCG 2 cut(s) 125, 738
MwoI GCNNNNNNNGC 5 cut(s) 101, 480, 740, 1038, 1110
NdeI CATATG 2 cut(s) 97, 790
NdeII GATC 2 cut(s) 350, 989
NlaIII CATG 7 cut(s) 155, 577, 868, 881, 899, 1201, 1210
NlaIV GGNNCC 3 cut(s) 276, 352, 915
NspI RCATGY 1 cut(s) 155
PasI CCCWGGG 1 cut(s) 429
PceI AGGCCT 2 cut(s) 378, 1017
PciI ACATGT 1 cut(s) 151
PciSI GCTCTTC 1 cut(s) 764
PcsI WCGNNNNNNNCGW 2 cut(s) 399, 1175
PctI GAATGC 2 cut(s) 404, 1043
PdmI GAANNNNTTC 1 cut(s) 134
PfeI GAWTC 2 cut(s) 799, 825
PflFI GACNNNGTC 1 cut(s) 185
PkrI GCNGC 4 cut(s) 124, 361, 1000, 1126
PleI GAGTC 3 cut(s) 194, 349, 988
PpsI GAGTC 3 cut(s) 194, 349, 988
PscI ACATGT 1 cut(s) 151
PsiI TTATAA 1 cut(s) 243
Psp1406I AACGTT 2 cut(s) 12, 651
Psp6I CCWGG 1 cut(s) 428
PspEI GGTNACC 1 cut(s) 20
PspGI CCWGG 1 cut(s) 428
PspN4I GGNNCC 3 cut(s) 276, 352, 915
PspPI GGNCC 2 cut(s) 1087, 1232
PsuI RGATCY 2 cut(s) 350, 989
PsyI GACNNNGTC 1 cut(s) 185
RsaI GTAC 2 cut(s) 863, 1010
RsaNI GTAC 2 cut(s) 862, 1009
SacII CCGCGG 1 cut(s) 126
SapI GCTCTTC 1 cut(s) 764
SaqAI TTAA 4 cut(s) 390, 747, 935, 1276
SatI GCNGC 4 cut(s) 123, 360, 999, 1125
Sau3AI GATC 2 cut(s) 350, 989
Sau96I GGNCC 2 cut(s) 1087, 1232
SchI GAGTC 3 cut(s) 195, 350, 989
ScrFI CCNGG 1 cut(s) 430
SduI GDGCHC 4 cut(s) 225, 264, 736, 903
SetI ASST 8 cut(s) 15, 327, 471, 481, 630, 654, 966, 1111
SfaNI GCATC 5 cut(s) 42, 551, 560, 681, 1111
Sfr303I CCGCGG 1 cut(s) 126
SgrBI CCGCGG 1 cut(s) 126
SinI GGWCC 1 cut(s) 1087
Sse9I AATT 3 cut(s) 600, 872, 1242
SseBI AGGCCT 2 cut(s) 378, 1017
SsiI CCGC 2 cut(s) 123, 125
SspI AATATT 1 cut(s) 385
SspMI CTAG 1 cut(s) 882
StuI AGGCCT 2 cut(s) 378, 1017
StyD4I CCNGG 1 cut(s) 428
StyI CCWWGG 1 cut(s) 90
TaaI ACNGT 2 cut(s) 457, 1087
TaiI ACGT 4 cut(s) 15, 327, 654, 966
TaqI TCGA 6 cut(s) 145, 554, 777, 784, 1119, 1178
TasI AATT 3 cut(s) 600, 872, 1242
TauI GCSGC 1 cut(s) 125
TfiI GAWTC 2 cut(s) 799, 825
Tru1I TTAA 4 cut(s) 390, 747, 935, 1276
Tru9I TTAA 4 cut(s) 390, 747, 935, 1276
TscAI CASTG 5 cut(s) 294, 311, 592, 950, 1081
TseI GCWGC 3 cut(s) 359, 998, 1124
TspDTI ATGAA 5 cut(s) 51, 690, 767, 866, 1050
TspGWI ACGGA 2 cut(s) 47, 198
TspRI CASTG 5 cut(s) 294, 311, 592, 950, 1081
Tth111I GACNNNGTC 1 cut(s) 185
VpaK11BI GGWCC 1 cut(s) 1087
XagI CCTNNNNNAGG 1 cut(s) 433
XapI RAATTY 1 cut(s) 872
XceI RCATGY 1 cut(s) 155
XcmI CCANNNNNNNNNTGG 1 cut(s) 97
XmiI GTMKAC 1 cut(s) 369
XmnI GAANNNNTTC 1 cut(s) 134
XspI CTAG 1 cut(s) 882
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.