Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0001765

Physical Location & Seq

Genomic Coordinates Reverse (-)

13290334 .. 13291645

Gene Structure 1312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1163100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGCCAACAACGTTTTTGGCAACCCCATCACCGAGGAAACTTTGAAGGTGATGCCGGAGTATCAAATAAAAAGATTAGACAAGGCACGAGTGGCATTGAGCATGAAAGATGTCGACGAGAAGAGCACCAACGCTCGAACATATGTGGAGCAACTGAGGGAGAGGTATGGCCCGCGAATCTCCACACGCTGCCTTGTTTACAATGCAACTGGGGACATGATAACATTTCATGCTAGCAAAGATTGGTATGGGCACATTGAAGGGGCAGCACCATACCCAACAGTGATTTCAAATGGTCAGTGGGGTGCGTTTCTGCACGTCCAAACGACTACACCATTACCATTGGCTGGATCCAATGCGGCTGTTGTGTATCGAGGCCTGAATAACGCCGGTAGCGAATGCTACTGGTTGTTGTCTTGGGACAACCCATTTAACAGGGCAGGGAACAAGGTCTATACAGAGGTTCGCAAAGCTGGCGCCTTTGATGCTGCTTGGGACGATATCTGTTCTGCCTTGGAGAGTTCTACTGGGACCACAGTGGGCATATCGAATGGATGCGTGTCAAGGATGACAATTGGCACCGACACTTCCCCAATTGTTGAAGCAATACTCACTTTAGAACATGCCGAAGAACCAAAACCCACTACGGGACATGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

220

Amino Acids

23.99

Weight (kDa)

5.74

Isoelectric Point (pI)

24.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nakanori	PF21230	29 - 193	5e-38	Nakanori-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001765)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g36010
malus_domestica	MD05G1102400.v1.1 MD09G1162600.v1.1 MD09G1162700.v1.1 MD09G1162900.v1.1 MD09G1163100.v1.1 MD17G1147700.v1.1 MD17G1148000.v1.1 MD17G1148100.v1.1 MD17G1148200.v1.1
prunus_persica	Prupe.1G577300_v2.0.a1 Prupe.2G116800_v2.0.a1 Prupe.2G116900_v2.0.a1
pyrus_communis	pycom09g08020 pycom09g08070 pycom17g14020 pycom17g14090 pycom17g14130
rosa_laevigata	RLG00000019195 RLG00000019197 RLG00000020315 RLG00000020317 RLG00000020337
rosa_multiflora	Rmu_sc0001516.1_g000044 Rmu_sc0001516.1_g000051 Rmu_sc0001516.1_g000054 Rmu_sc0004032.1_g000004
rosa_roxburghii	Rroxscaffold_2G00098880 Rroxscaffold_2G00098890 Rroxscaffold_2G00099060 Rroxscaffold_2G00099100 Rroxscaffold_2G00099110 Rroxscaffold_2G00101280
rosa_rugosa	Rorug02G0403500 Rorug02G0403600 Rorug02G0405600 Rorug02G0405700
rosa_samantha	Rh2AG461500 Rh2AG461700 Rh2AG464500 Rh2BG477400 Rh2CG448600 Rh2CG448700 Rh2CG451100 Rh2CG451200 Rh2DG486200 Rh5AG501100
rosa_wichuraiana	Rw2G037860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	476, 578
AccB7I	CCANNNNNTGG	1 cut(s)	347
AccI	GTMKAC	1 cut(s)	114
AccII	CGCG	1 cut(s)	175
AciI	CCGC	2 cut(s)	173, 359
AclI	AACGTT	1 cut(s)	12
AclWI	GGATC	2 cut(s)	345, 358
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	1 cut(s)	477
AfiI	CCNNNNNNNGG	2 cut(s)	347, 647
AgsI	TTSAA	4 cut(s)	46, 260, 291, 602
AjiI	CACGTC	1 cut(s)	319
AjuI	GAANNNNNNNTTGG	2 cut(s)	271, 303
AluBI	AGCT	1 cut(s)	473
AluI	AGCT	1 cut(s)	473
Alw21I	GWGCWC	1 cut(s)	128
AlwI	GGATC	2 cut(s)	345, 358
AoxI	GGCC	3 cut(s)	3, 169, 376
ApeKI	GCWGC	3 cut(s)	189, 266, 488
AspLEI	GCGC	1 cut(s)	479
AspS9I	GGNCC	2 cut(s)	170, 531
AsuHPI	GGTGA	2 cut(s)	22, 61
AsuNHI	GCTAGC	1 cut(s)	233
AvaII	GGWCC	1 cut(s)	531
BaeGI	GKGCMC	1 cut(s)	255
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	350
BanI	GGYRCC	2 cut(s)	476, 578
BauI	CACGAG	1 cut(s)	87
Bbv12I	GWGCWC	1 cut(s)	128
BbvI	GCAGC	3 cut(s)	176, 278, 475
BccI	CCATC	1 cut(s)	35
BfaI	CTAG	1 cut(s)	234
BfoI	RGCGCY	1 cut(s)	480
BisI	GCNGC	4 cut(s)	190, 267, 360, 489
BlsI	GCNGC	4 cut(s)	191, 268, 361, 490
Bme18I	GGWCC	1 cut(s)	531
BmgBI	CACGTC	1 cut(s)	319
BmgT120I	GGNCC	2 cut(s)	170, 531
BmiI	GGNNCC	4 cut(s)	352, 478, 532, 580
BmrI	ACTGGG	2 cut(s)	219, 537
BmsI	GCATC	3 cut(s)	42, 475, 545
BmtI	GCTAGC	1 cut(s)	237
BmuI	ACTGGG	2 cut(s)	219, 537
BsaHI	GRCGYC	1 cut(s)	477
BsaJI	CCNNGG	2 cut(s)	33, 513
Bsc4I	CCNNNNNNNGG	2 cut(s)	347, 647
Bse118I	RCCGGY	1 cut(s)	389
Bse1I	ACTGG	3 cut(s)	214, 410, 532
BseDI	CCNNGG	2 cut(s)	33, 513
BseGI	GGATG	2 cut(s)	560, 573
BseLI	CCNNNNNNNGG	2 cut(s)	347, 647
BseMII	CTCAG	1 cut(s)	146
BseNI	ACTGG	3 cut(s)	214, 410, 532
BseSI	GKGCMC	1 cut(s)	255
BseXI	GCAGC	3 cut(s)	176, 278, 475
BsgI	GTGCAG	1 cut(s)	299
Bsh1236I	CGCG	1 cut(s)	175
BshFI	GGCC	3 cut(s)	5, 171, 378
BshNI	GGYRCC	2 cut(s)	476, 578
BsiHKAI	GWGCWC	1 cut(s)	128
BsiSI	CCGG	2 cut(s)	56, 390
BslFI	GGGAC	4 cut(s)	227, 434, 509, 544
BslI	CCNNNNNNNGG	2 cut(s)	347, 647
BsmFI	GGGAC	4 cut(s)	227, 434, 509, 544
BsmI	GAATGC	1 cut(s)	404
BsnI	GGCC	3 cut(s)	5, 171, 378
Bsp1286I	GDGCHC	2 cut(s)	128, 255
Bsp143I	GATC	1 cut(s)	350
BspACI	CCGC	2 cut(s)	173, 359
BspANI	GGCC	3 cut(s)	5, 171, 378
BspCNI	CTCAG	1 cut(s)	147
BspFNI	CGCG	1 cut(s)	175
BspLI	GGNNCC	4 cut(s)	352, 478, 532, 580
BspOI	GCTAGC	1 cut(s)	237
BspPI	GGATC	2 cut(s)	345, 358
BspQI	GCTCTTC	1 cut(s)	116
BspT107I	GGYRCC	2 cut(s)	476, 578
BsrFI	RCCGGY	1 cut(s)	389
BsrI	ACTGG	3 cut(s)	214, 410, 532
BssAI	RCCGGY	1 cut(s)	389
BssECI	CCNNGG	2 cut(s)	33, 513
BssMI	GATC	1 cut(s)	350
BssNI	GRCGYC	1 cut(s)	477
BssSI	CACGAG	1 cut(s)	87
BssT1I	CCWWGG	1 cut(s)	513
Bst2BI	CACGAG	1 cut(s)	87
Bst4CI	ACNGT	2 cut(s)	283, 538
Bst6I	CTCTTC	1 cut(s)	116
BstACI	GRCGYC	1 cut(s)	477
BstC8I	GCNNGC	3 cut(s)	173, 235, 475
BstDEI	CTNAG	1 cut(s)	155
BstF5I	GGATG	2 cut(s)	560, 573
BstFNI	CGCG	1 cut(s)	175
BstH2I	RGCGCY	1 cut(s)	480
BstHHI	GCGC	1 cut(s)	479
BstKTI	GATC	1 cut(s)	353
BstMBI	GATC	1 cut(s)	350
BstMWI	GCNNNNNNNGC	3 cut(s)	92, 474, 485
BstNSI	RCATGY	2 cut(s)	626, 656
BstSLI	GKGCMC	1 cut(s)	255
BstUI	CGCG	1 cut(s)	175
BstV1I	GCAGC	3 cut(s)	176, 278, 475
BstX2I	RGATCY	1 cut(s)	350
BstYI	RGATCY	1 cut(s)	350
BsuRI	GGCC	3 cut(s)	5, 171, 378
BtrI	CACGTC	1 cut(s)	319
BtsCI	GGATG	2 cut(s)	560, 573
BtsIMutI	CAGTG	3 cut(s)	288, 305, 543
Cac8I	GCNNGC	3 cut(s)	173, 235, 475
CfoI	GCGC	1 cut(s)	479
Cfr10I	RCCGGY	1 cut(s)	389
Cfr13I	GGNCC	2 cut(s)	170, 531
CviAII	CATG	5 cut(s)	103, 217, 230, 623, 653
CviJI	RGCY	6 cut(s)	5, 171, 347, 362, 378, 473
CviKI_1	RGCY	6 cut(s)	5, 171, 347, 362, 378, 473
DdeI	CTNAG	1 cut(s)	155
DinI	GGCGCC	1 cut(s)	478
DpnI	GATC	1 cut(s)	352
DpnII	GATC	1 cut(s)	350
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	116
Eco130I	CCWWGG	1 cut(s)	513
Eco147I	AGGCCT	1 cut(s)	378
Eco32I	GATATC	1 cut(s)	502
Eco47I	GGWCC	1 cut(s)	531
EcoRV	GATATC	1 cut(s)	502
EcoT14I	CCWWGG	1 cut(s)	513
EgeI	GGCGCC	1 cut(s)	478
EheI	GGCGCC	1 cut(s)	478
ErhI	CCWWGG	1 cut(s)	513
FaeI	CATG	5 cut(s)	106, 220, 233, 626, 656
FaqI	GGGAC	4 cut(s)	227, 434, 509, 544
FatI	CATG	5 cut(s)	102, 216, 229, 622, 652
FauI	CCCGC	1 cut(s)	180
FauNDI	CATATG	1 cut(s)	142
FblI	GTMKAC	1 cut(s)	114
Fnu4HI	GCNGC	4 cut(s)	190, 267, 360, 489
FokI	GGATG	2 cut(s)	567, 580
Fsp4HI	GCNGC	4 cut(s)	190, 267, 360, 489
FspBI	CTAG	1 cut(s)	234
GlaI	GCGC	1 cut(s)	478
GluI	GCNGC	4 cut(s)	190, 267, 360, 489
HaeII	RGCGCY	1 cut(s)	480
HaeIII	GGCC	3 cut(s)	5, 171, 378
HapII	CCGG	2 cut(s)	56, 390
HhaI	GCGC	1 cut(s)	479
Hin1I	GRCGYC	1 cut(s)	477
Hin1II	CATG	5 cut(s)	106, 220, 233, 626, 656
Hin6I	GCGC	1 cut(s)	477
HinP1I	GCGC	1 cut(s)	477
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HinfI	GANTC	1 cut(s)	177
HpaII	CCGG	2 cut(s)	56, 390
HphI	GGTGA	2 cut(s)	22, 61
Hpy166II	GTNNAC	2 cut(s)	115, 199
Hpy8I	GTNNAC	2 cut(s)	115, 199
Hpy99I	CGWCG	1 cut(s)	119
HpyAV	CCTTC	2 cut(s)	40, 254
HpyCH4III	ACNGT	2 cut(s)	283, 538
HpyCH4IV	ACGT	2 cut(s)	12, 318
HpyCH4V	TGCA	2 cut(s)	206, 316
HpyF10VI	GCNNNNNNNGC	3 cut(s)	92, 474, 485
HpyF3I	CTNAG	1 cut(s)	155
HpySE526I	ACGT	2 cut(s)	12, 318
Hsp92I	GRCGYC	1 cut(s)	477
Hsp92II	CATG	5 cut(s)	106, 220, 233, 626, 656
HspAI	GCGC	1 cut(s)	477
KasI	GGCGCC	1 cut(s)	476
Kzo9I	GATC	1 cut(s)	350
LguI	GCTCTTC	1 cut(s)	116
LmnI	GCTCC	1 cut(s)	148
Lsp1109I	GCAGC	3 cut(s)	176, 278, 475
LweI	GCATC	3 cut(s)	42, 475, 545
MaeI	CTAG	1 cut(s)	234
MaeII	ACGT	2 cut(s)	12, 318
MalI	GATC	1 cut(s)	352
MboI	GATC	1 cut(s)	350
MboII	GAAGA	2 cut(s)	133, 641
MfeI	CAATTG	2 cut(s)	573, 594
MflI	RGATCY	1 cut(s)	350
MhlI	GDGCHC	2 cut(s)	128, 255
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	573, 594
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	477
MnlI	CCTC	5 cut(s)	28, 150, 156, 368, 454
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	432
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	56, 390
MunI	CAATTG	2 cut(s)	573, 594
Mva1269I	GAATGC	1 cut(s)	404
MvnI	CGCG	1 cut(s)	175
MwoI	GCNNNNNNNGC	3 cut(s)	92, 474, 485
NarI	GGCGCC	1 cut(s)	477
NdeI	CATATG	1 cut(s)	142
NdeII	GATC	1 cut(s)	350
NheI	GCTAGC	1 cut(s)	233
NlaIII	CATG	5 cut(s)	106, 220, 233, 626, 656
NlaIV	GGNNCC	4 cut(s)	352, 478, 532, 580
NspI	RCATGY	2 cut(s)	626, 656
PceI	AGGCCT	1 cut(s)	378
PciSI	GCTCTTC	1 cut(s)	116
PcsI	WCGNNNNNNNCGW	1 cut(s)	393
PctI	GAATGC	1 cut(s)	404
PfeI	GAWTC	1 cut(s)	177
PflMI	CCANNNNNTGG	1 cut(s)	347
PkrI	GCNGC	4 cut(s)	191, 268, 361, 490
PluTI	GGCGCC	1 cut(s)	480
Psp1406I	AACGTT	1 cut(s)	12
PspN4I	GGNNCC	4 cut(s)	352, 478, 532, 580
PspPI	GGNCC	2 cut(s)	170, 531
PsuI	RGATCY	1 cut(s)	350
SalI	GTCGAC	1 cut(s)	113
SapI	GCTCTTC	1 cut(s)	116
SaqAI	TTAA	1 cut(s)	432
SatI	GCNGC	4 cut(s)	190, 267, 360, 489
Sau3AI	GATC	1 cut(s)	350
Sau96I	GGNCC	2 cut(s)	170, 531
SduI	GDGCHC	2 cut(s)	128, 255
SetI	ASST	7 cut(s)	15, 51, 167, 321, 453, 465, 475
SfaNI	GCATC	3 cut(s)	42, 475, 545
SfoI	GGCGCC	1 cut(s)	478
SinI	GGWCC	1 cut(s)	531
Sse9I	AATT	2 cut(s)	573, 594
SseBI	AGGCCT	1 cut(s)	378
SsiI	CCGC	2 cut(s)	173, 359
SspDI	GGCGCC	1 cut(s)	476
SspMI	CTAG	1 cut(s)	234
StuI	AGGCCT	1 cut(s)	378
StyI	CCWWGG	1 cut(s)	513
TaaI	ACNGT	2 cut(s)	283, 538
TaiI	ACGT	2 cut(s)	15, 321
TaqI	TCGA	4 cut(s)	114, 136, 373, 548
TasI	AATT	2 cut(s)	573, 594
TauI	GCSGC	1 cut(s)	362
TfiI	GAWTC	1 cut(s)	177
Tru1I	TTAA	1 cut(s)	432
Tru9I	TTAA	1 cut(s)	432
TscAI	CASTG	3 cut(s)	288, 305, 543
TseI	GCWGC	3 cut(s)	189, 266, 488
TspDTI	ATGAA	2 cut(s)	119, 218
TspRI	CASTG	3 cut(s)	288, 305, 543
Van91I	CCANNNNNTGG	1 cut(s)	347
VpaK11BI	GGWCC	1 cut(s)	531
XceI	RCATGY	2 cut(s)	626, 656
XmiI	GTMKAC	1 cut(s)	114
XspI	CTAG	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.