Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0001765

Physical Location & Seq

Genomic Coordinates Reverse (-)

13486051 .. 13487888

Gene Structure 1838 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1148000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGAGATGGGGAGAGACGTGTTTGGCAACCCCATCACAACCGCAACTTTGGAGGGTATGCCAGAGTATAGATCTGGGAAAATAACAAGAATCGACAGGGCACGCGCGGCAATGGATATGAAAAAAGCCAGGGGAAAGGACTACGTGAAGGCACGAGCACACCTCGAGCATTTGAAGGACGAATCGGGTACAAAACTCGCCAATCTCGTCCTTATTTACAATGCAACAGGAGACACCGTCAGATGTGTTGGTCAGAAAGATTGGATTGGCGTTGACATAGTGTACCCACCATTGATTGGAAATGGCCAGTGGGCTGCGTTTCTGACCGTCAAAAACCCCAGTTATAGTTATGGCTCTACTTCCGCTGTTGTGTATCGCGGCAAGAACGCCGATGGTAACAACTGCGACTATATGCTGTCTTGGAGCAACCCGGCGGACAGGGTTAAATGGGACAACACGGTTCGCAGAACTAACCACTTTGACAATGGAGCAACTTGGAATGAAATCTACGATCACTTGTGTAGAACTCGCTCGTCCCAAGAGGATACATGGCATGGATGTACCTCAACCATCTCAACTGACAGTGCTATTTTCGCAGTAGTTGAGGGAACACTCACTATAGAAGATGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

211

Amino Acids

23.45

Weight (kDa)

6.51

Isoelectric Point (pI)

19.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nakanori	PF21230	34 - 193	2.4e-26	Nakanori-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001765)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g36010
malus_domestica	MD05G1102400.v1.1 MD09G1162600.v1.1 MD09G1162700.v1.1 MD09G1162900.v1.1 MD09G1163100.v1.1 MD17G1147700.v1.1 MD17G1148000.v1.1 MD17G1148100.v1.1 MD17G1148200.v1.1
prunus_persica	Prupe.1G577300_v2.0.a1 Prupe.2G116800_v2.0.a1 Prupe.2G116900_v2.0.a1
pyrus_communis	pycom09g08020 pycom09g08070 pycom17g14020 pycom17g14090 pycom17g14130
rosa_laevigata	RLG00000019195 RLG00000019197 RLG00000020315 RLG00000020317 RLG00000020337
rosa_multiflora	Rmu_sc0001516.1_g000044 Rmu_sc0001516.1_g000051 Rmu_sc0001516.1_g000054 Rmu_sc0004032.1_g000004
rosa_roxburghii	Rroxscaffold_2G00098880 Rroxscaffold_2G00098890 Rroxscaffold_2G00099060 Rroxscaffold_2G00099100 Rroxscaffold_2G00099110 Rroxscaffold_2G00101280
rosa_rugosa	Rorug02G0403500 Rorug02G0403600 Rorug02G0405600 Rorug02G0405700
rosa_samantha	Rh2AG461500 Rh2AG461700 Rh2AG464500 Rh2BG477400 Rh2CG448600 Rh2CG448700 Rh2CG451100 Rh2CG451200 Rh2DG486200 Rh5AG501100
rosa_wichuraiana	Rw2G037860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	296
AccII	CGCG	3 cut(s)	105, 107, 378
AciI	CCGC	5 cut(s)	42, 107, 363, 378, 434
AcoI	YGGCCR	1 cut(s)	304
AfaI	GTAC	3 cut(s)	190, 284, 562
AfiI	CCNNNNNNNGG	1 cut(s)	296
AflIII	ACRYGT	1 cut(s)	18
AgsI	TTSAA	1 cut(s)	175
AjiI	CACGTC	1 cut(s)	19
AjnI	CCWGG	1 cut(s)	128
Alw21I	GWGCWC	1 cut(s)	160
Alw26I	GTCTC	2 cut(s)	9, 225
Ama87I	CYCGRG	1 cut(s)	164
AoxI	GGCC	1 cut(s)	304
ApeKI	GCWGC	1 cut(s)	314
AspLEI	GCGC	1 cut(s)	107
AsuC2I	CCSGG	1 cut(s)	431
AvaI	CYCGRG	1 cut(s)	164
BaeGI	GKGCMC	1 cut(s)	103
BalI	TGGCCA	1 cut(s)	306
BauI	CACGAG	1 cut(s)	153
Bbv12I	GWGCWC	1 cut(s)	160
BbvI	GCAGC	1 cut(s)	301
BccI	CCATC	3 cut(s)	41, 386, 578
BciT130I	CCWGG	1 cut(s)	130
BciVI	GTATCC	1 cut(s)	538
BcnI	CCSGG	1 cut(s)	431
BcoDI	GTCTC	2 cut(s)	9, 225
BfmI	CTRYAG	1 cut(s)	618
BfuI	GTATCC	1 cut(s)	538
BglII	AGATCT	1 cut(s)	71
BisI	GCNGC	3 cut(s)	108, 315, 379
BlsI	GCNGC	3 cut(s)	109, 316, 380
Bme1390I	CCNGG	2 cut(s)	130, 431
BmeT110I	CYCGRG	1 cut(s)	164
BmgBI	CACGTC	1 cut(s)	19
BmrFI	CCNGG	2 cut(s)	130, 431
BmrI	ACTGGG	1 cut(s)	333
BmuI	ACTGGG	1 cut(s)	333
BplI	GAGNNNNNCTC	2 cut(s)	147, 179
BpuMI	CCSGG	1 cut(s)	431
BsaAI	YACGTR	1 cut(s)	145
BsaJI	CCNNGG	1 cut(s)	129
BsaXI	ACNNNNNCTCC	2 cut(s)	222, 252
Bsc4I	CCNNNNNNNGG	1 cut(s)	296
Bse1I	ACTGG	2 cut(s)	307, 339
Bse3DI	GCAATG	1 cut(s)	117
BseBI	CCWGG	1 cut(s)	130
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	1 cut(s)	563
BseLI	CCNNNNNNNGG	1 cut(s)	296
BseMI	GCAATG	1 cut(s)	117
BseNI	ACTGG	2 cut(s)	307, 339
BseSI	GKGCMC	1 cut(s)	103
BseXI	GCAGC	1 cut(s)	301
Bsh1236I	CGCG	3 cut(s)	105, 107, 378
BshFI	GGCC	1 cut(s)	306
BsiHKAI	GWGCWC	1 cut(s)	160
BsiHKCI	CYCGRG	1 cut(s)	164
BsiSI	CCGG	1 cut(s)	431
BslFI	GGGAC	2 cut(s)	464, 520
BslI	CCNNNNNNNGG	1 cut(s)	296
BsmAI	GTCTC	2 cut(s)	9, 225
BsmBI	CGTCTC	1 cut(s)	9
BsmFI	GGGAC	2 cut(s)	464, 520
BsnI	GGCC	1 cut(s)	306
BsoBI	CYCGRG	1 cut(s)	164
Bsp1286I	GDGCHC	2 cut(s)	103, 160
Bsp143I	GATC	2 cut(s)	71, 511
BspACI	CCGC	5 cut(s)	42, 107, 363, 378, 434
BspANI	GGCC	1 cut(s)	306
BspFNI	CGCG	3 cut(s)	105, 107, 378
BsrDI	GCAATG	1 cut(s)	117
BsrI	ACTGG	2 cut(s)	307, 339
BssECI	CCNNGG	1 cut(s)	129
BssMI	GATC	2 cut(s)	71, 511
BssSI	CACGAG	1 cut(s)	153
Bst2BI	CACGAG	1 cut(s)	153
Bst2UI	CCWGG	1 cut(s)	130
Bst4CI	ACNGT	4 cut(s)	238, 328, 460, 584
BstBAI	YACGTR	1 cut(s)	145
BstC8I	GCNNGC	1 cut(s)	103
BstF5I	GGATG	1 cut(s)	563
BstFNI	CGCG	3 cut(s)	105, 107, 378
BstHHI	GCGC	1 cut(s)	107
BstKTI	GATC	2 cut(s)	74, 514
BstMAI	GTCTC	2 cut(s)	9, 225
BstMBI	GATC	2 cut(s)	71, 511
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 593
BstNI	CCWGG	1 cut(s)	130
BstSCI	CCNGG	2 cut(s)	128, 429
BstSFI	CTRYAG	1 cut(s)	618
BstSLI	GKGCMC	1 cut(s)	103
BstUI	CGCG	3 cut(s)	105, 107, 378
BstV1I	GCAGC	1 cut(s)	301
BstX2I	RGATCY	1 cut(s)	71
BstYI	RGATCY	1 cut(s)	71
BsuI	GTATCC	1 cut(s)	538
BsuRI	GGCC	1 cut(s)	306
BtrI	CACGTC	1 cut(s)	19
BtsCI	GGATG	1 cut(s)	563
BtsIMutI	CAGTG	2 cut(s)	314, 589
Cac8I	GCNNGC	1 cut(s)	103
CfoI	GCGC	1 cut(s)	107
Csp6I	GTAC	3 cut(s)	189, 283, 561
CviAII	CATG	2 cut(s)	549, 554
CviJI	RGCY	4 cut(s)	128, 306, 314, 354
CviKI_1	RGCY	4 cut(s)	128, 306, 314, 354
CviQI	GTAC	3 cut(s)	189, 283, 561
DpnI	GATC	2 cut(s)	73, 513
DpnII	GATC	2 cut(s)	71, 511
EaeI	YGGCCR	1 cut(s)	304
EciI	GGCGGA	1 cut(s)	449
Eco88I	CYCGRG	1 cut(s)	164
EcoRII	CCWGG	1 cut(s)	128
Esp3I	CGTCTC	1 cut(s)	9
FaeI	CATG	2 cut(s)	552, 557
FaqI	GGGAC	2 cut(s)	464, 520
FatI	CATG	2 cut(s)	548, 553
Fnu4HI	GCNGC	3 cut(s)	108, 315, 379
FokI	GGATG	1 cut(s)	570
Fsp4HI	GCNGC	3 cut(s)	108, 315, 379
GlaI	GCGC	1 cut(s)	106
GluI	GCNGC	3 cut(s)	108, 315, 379
HaeIII	GGCC	1 cut(s)	306
HapII	CCGG	1 cut(s)	431
HhaI	GCGC	1 cut(s)	107
Hin1II	CATG	2 cut(s)	552, 557
Hin6I	GCGC	1 cut(s)	105
HinP1I	GCGC	1 cut(s)	105
HincII	GTYRAC	1 cut(s)	274
HindII	GTYRAC	1 cut(s)	274
HinfI	GANTC	2 cut(s)	90, 182
HpaII	CCGG	1 cut(s)	431
Hpy166II	GTNNAC	2 cut(s)	274, 283
Hpy188I	TCNGA	4 cut(s)	242, 255, 324, 632
Hpy8I	GTNNAC	2 cut(s)	274, 283
HpyAV	CCTTC	2 cut(s)	142, 169
HpyCH4III	ACNGT	4 cut(s)	238, 328, 460, 584
HpyCH4IV	ACGT	2 cut(s)	18, 144
HpyCH4V	TGCA	1 cut(s)	224
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 593
HpySE526I	ACGT	2 cut(s)	18, 144
Hsp92II	CATG	2 cut(s)	552, 557
HspAI	GCGC	1 cut(s)	105
Kzo9I	GATC	2 cut(s)	71, 511
LmnI	GCTCC	2 cut(s)	423, 488
Lsp1109I	GCAGC	1 cut(s)	301
MaeII	ACGT	2 cut(s)	18, 144
MaeIII	GTNAC	1 cut(s)	395
MalI	GATC	2 cut(s)	73, 513
MboI	GATC	2 cut(s)	71, 511
MflI	RGATCY	1 cut(s)	71
MhlI	GDGCHC	2 cut(s)	103, 160
MlsI	TGGCCA	1 cut(s)	306
MluNI	TGGCCA	1 cut(s)	306
MnlI	CCTC	5 cut(s)	46, 173, 535, 574, 598
Mox20I	TGGCCA	1 cut(s)	306
MscI	TGGCCA	1 cut(s)	306
MseI	TTAA	1 cut(s)	444
Msp20I	TGGCCA	1 cut(s)	306
MspA1I	CMGCKG	1 cut(s)	365
MspI	CCGG	1 cut(s)	431
MspR9I	CCNGG	2 cut(s)	130, 431
MvaI	CCWGG	1 cut(s)	130
MvnI	CGCG	3 cut(s)	105, 107, 378
MwoI	GCNNNNNNNGC	2 cut(s)	107, 593
NciI	CCSGG	1 cut(s)	431
NdeII	GATC	2 cut(s)	71, 511
NlaIII	CATG	2 cut(s)	552, 557
PaeR7I	CTCGAG	1 cut(s)	164
PcsI	WCGNNNNNNNCGW	1 cut(s)	204
PfeI	GAWTC	2 cut(s)	90, 182
PflFI	GACNNNGTC	1 cut(s)	236
PflMI	CCANNNNNTGG	1 cut(s)	296
PkrI	GCNGC	3 cut(s)	109, 316, 380
Ppu21I	YACGTR	1 cut(s)	145
Psp6I	CCWGG	1 cut(s)	128
PspGI	CCWGG	1 cut(s)	128
PspXI	VCTCGAGB	1 cut(s)	164
PsuI	RGATCY	1 cut(s)	71
PsyI	GACNNNGTC	1 cut(s)	236
RsaI	GTAC	3 cut(s)	190, 284, 562
RsaNI	GTAC	3 cut(s)	189, 283, 561
SaqAI	TTAA	1 cut(s)	444
SatI	GCNGC	3 cut(s)	108, 315, 379
Sau3AI	GATC	2 cut(s)	71, 511
ScrFI	CCNGG	2 cut(s)	130, 431
SduI	GDGCHC	2 cut(s)	103, 160
SetI	ASST	4 cut(s)	21, 147, 165, 566
SfcI	CTRYAG	1 cut(s)	618
Sfr274I	CTCGAG	1 cut(s)	164
SlaI	CTCGAG	1 cut(s)	164
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
SsiI	CCGC	5 cut(s)	42, 107, 363, 378, 434
StyD4I	CCNGG	2 cut(s)	128, 429
TaaI	ACNGT	4 cut(s)	238, 328, 460, 584
TaiI	ACGT	2 cut(s)	21, 147
TaqI	TCGA	2 cut(s)	93, 165
TauI	GCSGC	2 cut(s)	110, 381
TfiI	GAWTC	2 cut(s)	90, 182
Tru1I	TTAA	1 cut(s)	444
Tru9I	TTAA	1 cut(s)	444
TscAI	CASTG	2 cut(s)	314, 589
TseI	GCWGC	1 cut(s)	314
TspDTI	ATGAA	2 cut(s)	134, 516
TspRI	CASTG	2 cut(s)	314, 589
Tth111I	GACNNNGTC	1 cut(s)	236
Van91I	CCANNNNNTGG	1 cut(s)	296
XcmI	CCANNNNNNNNNTGG	1 cut(s)	482
XhoI	CTCGAG	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.