Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001765

Physical Location & Seq

Genomic Coordinates Forward (+)

61237272 .. 61237697

Gene Structure 426 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG451200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGCAAACGTATTTGGCAACCCCATAACCGACTCAACTCTAGCGGCAATGCCAATGTATGCCAACAAGCAACCGACAACAGTTGATTGGGCACGCGTGGATCTCAACATGCAAAGCATCGGCACGAAGACTACCGACGCACTCACTTTCGTGCAGAACTTGAAGAAGCAGTATGGAGATGGAGTCTCCACACTTTGCCTCCTTTACAATGCTACTGGGAACACCTTAACTTTTGTTACTCCTAAAGATTGGTATGGGCATATTGGCCAAGCCCCCTACCCAATGCGAATTCAAAATGGACAATGGGGTGCATTTCTGCATGTGCAAAGCTCTGCAGAAACAAACGGTTCTTGTGCCGCTCCTCTGTTTCGCGGCAAAAAAAGCAATGGGGTTGACTCTGACTACATGATGGCGTGGCGTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

141

Amino Acids

15.52

Weight (kDa)

8.58

Isoelectric Point (pI)

30.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nakanori	PF21230	32 - 139	9.9e-35	Nakanori-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001765)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g36010
malus_domestica	MD05G1102400.v1.1 MD09G1162600.v1.1 MD09G1162700.v1.1 MD09G1162900.v1.1 MD09G1163100.v1.1 MD17G1147700.v1.1 MD17G1148000.v1.1 MD17G1148100.v1.1 MD17G1148200.v1.1
prunus_persica	Prupe.1G577300_v2.0.a1 Prupe.2G116800_v2.0.a1 Prupe.2G116900_v2.0.a1
pyrus_communis	pycom09g08020 pycom09g08070 pycom17g14020 pycom17g14090 pycom17g14130
rosa_laevigata	RLG00000019195 RLG00000019197 RLG00000020315 RLG00000020317 RLG00000020337
rosa_multiflora	Rmu_sc0001516.1_g000044 Rmu_sc0001516.1_g000051 Rmu_sc0001516.1_g000054 Rmu_sc0004032.1_g000004
rosa_roxburghii	Rroxscaffold_2G00098880 Rroxscaffold_2G00098890 Rroxscaffold_2G00099060 Rroxscaffold_2G00099100 Rroxscaffold_2G00099110 Rroxscaffold_2G00101280
rosa_rugosa	Rorug02G0403500 Rorug02G0403600 Rorug02G0405600 Rorug02G0405700
rosa_samantha	Rh2AG461500 Rh2AG461700 Rh2AG464500 Rh2BG477400 Rh2CG448600 Rh2CG448700 Rh2CG451100 Rh2CG451200 Rh2DG486200 Rh5AG501100
rosa_wichuraiana	Rw2G037860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	359
AccII	CGCG	2 cut(s)	96, 372
AciI	CCGC	3 cut(s)	44, 357, 372
AclWI	GGATC	1 cut(s)	108
AcoI	YGGCCR	1 cut(s)	265
AcsI	RAATTY	1 cut(s)	288
AflIII	ACRYGT	1 cut(s)	94
AgsI	TTSAA	2 cut(s)	163, 293
AleI	CACNNNNGTG	1 cut(s)	149
AluBI	AGCT	1 cut(s)	330
AluI	AGCT	1 cut(s)	330
Alw26I	GTCTC	1 cut(s)	190
AlwI	GGATC	1 cut(s)	108
AoxI	GGCC	1 cut(s)	265
ApoI	RAATTY	1 cut(s)	288
BaeGI	GKGCMC	1 cut(s)	94
BalI	TGGCCA	1 cut(s)	267
BbsI	GAAGAC	1 cut(s)	134
BccI	CCATC	2 cut(s)	173, 403
BcoDI	GTCTC	1 cut(s)	190
BfaI	CTAG	1 cut(s)	41
BfmI	CTRYAG	1 cut(s)	333
BisI	GCNGC	3 cut(s)	45, 357, 373
BlsI	GCNGC	3 cut(s)	46, 358, 374
BmrI	ACTGGG	1 cut(s)	225
BmsI	GCATC	1 cut(s)	126
BmuI	ACTGGG	1 cut(s)	225
BpiI	GAAGAC	1 cut(s)	134
BsaXI	ACNNNNNCTCC	4 cut(s)	168, 183, 198, 213
Bse1I	ACTGG	1 cut(s)	220
Bse3DI	GCAATG	2 cut(s)	54, 391
BseMI	GCAATG	2 cut(s)	54, 391
BseNI	ACTGG	1 cut(s)	220
BseRI	GAGGAG	1 cut(s)	351
BseSI	GKGCMC	1 cut(s)	94
BsgI	GTGCAG	1 cut(s)	173
Bsh1236I	CGCG	2 cut(s)	96, 372
BshFI	GGCC	1 cut(s)	267
BsmAI	GTCTC	1 cut(s)	190
BsnI	GGCC	1 cut(s)	267
Bsp1286I	GDGCHC	1 cut(s)	94
Bsp143I	GATC	1 cut(s)	100
BspACI	CCGC	3 cut(s)	44, 357, 372
BspANI	GGCC	1 cut(s)	267
BspFNI	CGCG	2 cut(s)	96, 372
BspMAI	CTGCAG	1 cut(s)	337
BspPI	GGATC	1 cut(s)	108
BsrBI	CCGCTC	1 cut(s)	359
BsrDI	GCAATG	2 cut(s)	54, 391
BsrI	ACTGG	1 cut(s)	220
BssMI	GATC	1 cut(s)	100
Bst4CI	ACNGT	2 cut(s)	82, 347
BstC8I	GCNNGC	1 cut(s)	94
BstFNI	CGCG	2 cut(s)	96, 372
BstKTI	GATC	1 cut(s)	103
BstMAI	GTCTC	1 cut(s)	190
BstMBI	GATC	1 cut(s)	100
BstMWI	GCNNNNNNNGC	1 cut(s)	381
BstNSI	RCATGY	2 cut(s)	112, 323
BstSFI	CTRYAG	1 cut(s)	333
BstSLI	GKGCMC	1 cut(s)	94
BstUI	CGCG	2 cut(s)	96, 372
BstV2I	GAAGAC	1 cut(s)	134
BstX2I	RGATCY	1 cut(s)	100
BstYI	RGATCY	1 cut(s)	100
BsuRI	GGCC	1 cut(s)	267
Cac8I	GCNNGC	1 cut(s)	94
CseI	GACGC	1 cut(s)	146
CviAII	CATG	3 cut(s)	109, 320, 406
CviJI	RGCY	3 cut(s)	267, 272, 330
CviKI_1	RGCY	3 cut(s)	267, 272, 330
DpnI	GATC	1 cut(s)	102
DpnII	GATC	1 cut(s)	100
EaeI	YGGCCR	1 cut(s)	265
EcoRI	GAATTC	1 cut(s)	288
FaeI	CATG	3 cut(s)	112, 323, 409
FaiI	YATR	9 cut(s)	26, 60, 110, 174, 255, 261, 321, 407, 422
FatI	CATG	3 cut(s)	108, 319, 405
Fnu4HI	GCNGC	3 cut(s)	45, 357, 373
Fsp4HI	GCNGC	3 cut(s)	45, 357, 373
FspBI	CTAG	1 cut(s)	41
GluI	GCNGC	3 cut(s)	45, 357, 373
HaeIII	GGCC	1 cut(s)	267
HgaI	GACGC	1 cut(s)	146
Hin1II	CATG	3 cut(s)	112, 323, 409
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HinfI	GANTC	3 cut(s)	32, 183, 395
Hpy166II	GTNNAC	1 cut(s)	394
Hpy188I	TCNGA	1 cut(s)	400
Hpy8I	GTNNAC	1 cut(s)	394
Hpy99I	CGWCG	1 cut(s)	140
HpyCH4III	ACNGT	2 cut(s)	82, 347
HpyCH4IV	ACGT	1 cut(s)	9
HpyCH4V	TGCA	6 cut(s)	112, 154, 311, 319, 325, 335
HpyF10VI	GCNNNNNNNGC	1 cut(s)	381
HpySE526I	ACGT	1 cut(s)	9
Hsp92II	CATG	3 cut(s)	112, 323, 409
Kzo9I	GATC	1 cut(s)	100
LmnI	GCTCC	1 cut(s)	364
LpnPI	CCDG	1 cut(s)	201
LweI	GCATC	1 cut(s)	126
MaeI	CTAG	1 cut(s)	41
MaeII	ACGT	1 cut(s)	9
MaeIII	GTNAC	1 cut(s)	235
MalI	GATC	1 cut(s)	102
MbiI	CCGCTC	1 cut(s)	359
MboI	GATC	1 cut(s)	100
MboII	GAAGA	2 cut(s)	139, 175
MflI	RGATCY	1 cut(s)	100
MhlI	GDGCHC	1 cut(s)	94
MlsI	TGGCCA	1 cut(s)	267
MluCI	AATT	1 cut(s)	288
MluI	ACGCGT	1 cut(s)	94
MluNI	TGGCCA	1 cut(s)	267
MlyI	GAGTC	3 cut(s)	26, 192, 389
MnlI	CCTC	2 cut(s)	209, 372
Mox20I	TGGCCA	1 cut(s)	267
MscI	TGGCCA	1 cut(s)	267
MseI	TTAA	1 cut(s)	227
MslI	CAYNNNNRTG	1 cut(s)	149
Msp20I	TGGCCA	1 cut(s)	267
MvnI	CGCG	2 cut(s)	96, 372
MwoI	GCNNNNNNNGC	1 cut(s)	381
NdeII	GATC	1 cut(s)	100
NlaIII	CATG	3 cut(s)	112, 323, 409
NspI	RCATGY	2 cut(s)	112, 323
OliI	CACNNNNGTG	1 cut(s)	149
PkrI	GCNGC	3 cut(s)	46, 358, 374
PleI	GAGTC	3 cut(s)	26, 191, 389
PpsI	GAGTC	3 cut(s)	26, 191, 389
PstI	CTGCAG	1 cut(s)	337
PsuI	RGATCY	1 cut(s)	100
RseI	CAYNNNNRTG	1 cut(s)	149
SaqAI	TTAA	1 cut(s)	227
SatI	GCNGC	3 cut(s)	45, 357, 373
Sau3AI	GATC	1 cut(s)	100
SchI	GAGTC	3 cut(s)	26, 192, 389
SduI	GDGCHC	1 cut(s)	94
SetI	ASST	3 cut(s)	12, 227, 332
SfaNI	GCATC	1 cut(s)	126
SfcI	CTRYAG	1 cut(s)	333
SmiMI	CAYNNNNRTG	1 cut(s)	149
Sse9I	AATT	1 cut(s)	288
SsiI	CCGC	3 cut(s)	44, 357, 372
SspMI	CTAG	1 cut(s)	41
TaaI	ACNGT	2 cut(s)	82, 347
TaiI	ACGT	1 cut(s)	12
TasI	AATT	1 cut(s)	288
TauI	GCSGC	3 cut(s)	47, 359, 375
Tru1I	TTAA	1 cut(s)	227
Tru9I	TTAA	1 cut(s)	227
XapI	RAATTY	1 cut(s)	288
XceI	RCATGY	2 cut(s)	112, 323
XspI	CTAG	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.