Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001516.1

Orthogroup ID

OG0001765

Physical Location & Seq

Genomic Coordinates Reverse (-)

209611 .. 210402

Gene Structure 792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001516.1_g000054.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

atggcgaacgtgtttggcaaccccataaccgactcgaccctaaaagcaatggtagagtatgtcgccaaggaaataaccgcggttgacagggcacgtgtggcaatgaacatgaaaaccgccaacatgaaggatacaaacgcccgcagttacgtggagaatctaaagaagcagtgggggaatggagtatccactctttgcctcgtttacaatgctactgggaacactatcacttatgttagtgataaaaattttcatgggcacattggaccagccccatacccaatacaaattgaaaatggccagtggggtgcgtttttgcacgtcaaggtaactggagcggcagctggatctgaggcagctgttgtgtatcgcggcaaaaacggaagggatggcgaggactgtgactacatgatggcgtggtgcaacccatggcgtagacaagcttttgacaactcggtctgggctgaggcccgtgaagtgaaccacttcactcggttcactgatgcgagatggaactccttatatgaaacgttagatgtgactcgctaccaccaccgcgactcatgggagggatgcttgtccactatatcaactggcagtgacacttcccctgtattggaagcaatattcactttagaagatgcagctaatgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

218

Amino Acids

24.3

Weight (kDa)

5.86

Isoelectric Point (pI)

23.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001765)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g36010
malus_domestica	MD05G1102400.v1.1 MD09G1162600.v1.1 MD09G1162700.v1.1 MD09G1162900.v1.1 MD09G1163100.v1.1 MD17G1147700.v1.1 MD17G1148000.v1.1 MD17G1148100.v1.1 MD17G1148200.v1.1
prunus_persica	Prupe.1G577300_v2.0.a1 Prupe.2G116800_v2.0.a1 Prupe.2G116900_v2.0.a1
pyrus_communis	pycom09g08020 pycom09g08070 pycom17g14020 pycom17g14090 pycom17g14130
rosa_laevigata	RLG00000019195 RLG00000019197 RLG00000020315 RLG00000020317 RLG00000020337
rosa_multiflora	Rmu_sc0001516.1_g000044 Rmu_sc0001516.1_g000051 Rmu_sc0001516.1_g000054 Rmu_sc0004032.1_g000004
rosa_roxburghii	Rroxscaffold_2G00098880 Rroxscaffold_2G00098890 Rroxscaffold_2G00099060 Rroxscaffold_2G00099100 Rroxscaffold_2G00099110 Rroxscaffold_2G00101280
rosa_rugosa	Rorug02G0403500 Rorug02G0403600 Rorug02G0405600 Rorug02G0405700
rosa_samantha	Rh2AG461500 Rh2AG461700 Rh2AG464500 Rh2BG477400 Rh2CG448600 Rh2CG448700 Rh2CG451100 Rh2CG451200 Rh2DG486200 Rh5AG501100
rosa_wichuraiana	Rw2G037860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	455
AccBSI	CCGCTC	1 cut(s)	338
AccI	GTMKAC	1 cut(s)	436
AccII	CGCG	3 cut(s)	80, 372, 558
AciI	CCGC	7 cut(s)	78, 80, 117, 142, 338, 372, 556
AclI	AACGTT	1 cut(s)	530
AclWI	GGATC	1 cut(s)	355
AcoI	YGGCCR	1 cut(s)	298
AcsI	RAATTY	1 cut(s)	247
AcvI	CACGTG	1 cut(s)	95
AfiI	CCNNNNNNNGG	1 cut(s)	616
AflIII	ACRYGT	2 cut(s)	9, 94
AgsI	TTSAA	1 cut(s)	293
AjiI	CACGTC	1 cut(s)	322
AluBI	AGCT	4 cut(s)	344, 359, 443, 647
AluI	AGCT	4 cut(s)	344, 359, 443, 647
AlwI	GGATC	1 cut(s)	355
AoxI	GGCC	2 cut(s)	298, 468
ApeKI	GCWGC	3 cut(s)	341, 356, 644
ApoI	RAATTY	1 cut(s)	247
Asp700I	GAANNNNTTC	1 cut(s)	485
AspS9I	GGNCC	2 cut(s)	266, 469
AvaII	GGWCC	1 cut(s)	266
BaeGI	GKGCMC	2 cut(s)	94, 261
BalI	TGGCCA	1 cut(s)	300
BbrPI	CACGTG	1 cut(s)	95
BbvCI	CCTCAGC	1 cut(s)	465
BbvI	GCAGC	2 cut(s)	353, 368
BccI	CCATC	3 cut(s)	383, 406, 504
BciVI	GTATCC	2 cut(s)	124, 196
BfuI	GTATCC	2 cut(s)	124, 196
BisI	GCNGC	5 cut(s)	339, 342, 357, 373, 645
BlsI	GCNGC	5 cut(s)	340, 343, 358, 374, 646
Bme18I	GGWCC	1 cut(s)	266
BmgBI	CACGTC	1 cut(s)	322
BmgT120I	GGNCC	2 cut(s)	266, 469
BmrI	ACTGGG	1 cut(s)	225
BmsI	GCATC	3 cut(s)	493, 563, 631
BmuI	ACTGGG	1 cut(s)	225
BpmI	CTGGAG	1 cut(s)	354
Bpu10I	CCTNAGC	1 cut(s)	465
BsaAI	YACGTR	2 cut(s)	95, 151
BsaJI	CCNNGG	3 cut(s)	66, 78, 428
Bsc4I	CCNNNNNNNGG	1 cut(s)	616
Bse1I	ACTGG	4 cut(s)	220, 301, 337, 598
Bse3DI	GCAATG	2 cut(s)	54, 108
BseDI	CCNNGG	3 cut(s)	66, 78, 428
BseGI	GGATG	2 cut(s)	394, 578
BseLI	CCNNNNNNNGG	1 cut(s)	616
BseMI	GCAATG	2 cut(s)	54, 108
BseMII	CTCAG	2 cut(s)	342, 456
BseNI	ACTGG	4 cut(s)	220, 301, 337, 598
BseSI	GKGCMC	2 cut(s)	94, 261
BseXI	GCAGC	2 cut(s)	353, 368
Bsh1236I	CGCG	3 cut(s)	80, 372, 558
BshFI	GGCC	2 cut(s)	300, 470
BslI	CCNNNNNNNGG	1 cut(s)	616
BsnI	GGCC	2 cut(s)	300, 470
Bsp1286I	GDGCHC	2 cut(s)	94, 261
Bsp143I	GATC	1 cut(s)	347
Bsp19I	CCATGG	1 cut(s)	428
BspACI	CCGC	7 cut(s)	78, 80, 117, 142, 338, 372, 556
BspANI	GGCC	2 cut(s)	300, 470
BspCNI	CTCAG	2 cut(s)	343, 457
BspFNI	CGCG	3 cut(s)	80, 372, 558
BspPI	GGATC	1 cut(s)	355
BsrBI	CCGCTC	1 cut(s)	338
BsrDI	GCAATG	2 cut(s)	54, 108
BsrI	ACTGG	4 cut(s)	220, 301, 337, 598
BssECI	CCNNGG	3 cut(s)	66, 78, 428
BssMI	GATC	1 cut(s)	347
BssT1I	CCWWGG	2 cut(s)	66, 428
Bst4CI	ACNGT	1 cut(s)	401
BstAPI	GCANNNNNTGC	1 cut(s)	650
BstBAI	YACGTR	2 cut(s)	95, 151
BstC8I	GCNNGC	1 cut(s)	142
BstDEI	CTNAG	2 cut(s)	351, 465
BstDSI	CCRYGG	2 cut(s)	78, 428
BstF5I	GGATG	2 cut(s)	394, 578
BstFNI	CGCG	3 cut(s)	80, 372, 558
BstKTI	GATC	1 cut(s)	350
BstMBI	GATC	1 cut(s)	347
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 650
BstSLI	GKGCMC	2 cut(s)	94, 261
BstUI	CGCG	3 cut(s)	80, 372, 558
BstV1I	GCAGC	2 cut(s)	353, 368
BstX2I	RGATCY	1 cut(s)	347
BstYI	RGATCY	1 cut(s)	347
BsuI	GTATCC	2 cut(s)	124, 196
BsuRI	GGCC	2 cut(s)	300, 470
BtgI	CCRYGG	2 cut(s)	78, 428
BtrI	CACGTC	1 cut(s)	322
BtsCI	GGATG	2 cut(s)	394, 578
BtsI	GCAGTG	2 cut(s)	176, 604
BtsIMutI	CAGTG	4 cut(s)	176, 308, 498, 604
Cac8I	GCNNGC	1 cut(s)	142
Cfr13I	GGNCC	2 cut(s)	266, 469
Cfr42I	CCGCGG	1 cut(s)	81
CviAII	CATG	6 cut(s)	109, 124, 254, 409, 429, 564
CviJI	RGCY	8 cut(s)	272, 300, 344, 359, 443, 464, 470, 647
CviKI_1	RGCY	8 cut(s)	272, 300, 344, 359, 443, 464, 470, 647
DdeI	CTNAG	2 cut(s)	351, 465
DpnI	GATC	1 cut(s)	349
DpnII	GATC	1 cut(s)	347
DrdI	GACNNNNNNGTC	1 cut(s)	455
DseDI	GACNNNNNNGTC	1 cut(s)	455
EaeI	YGGCCR	1 cut(s)	298
Eco130I	CCWWGG	2 cut(s)	66, 428
Eco47I	GGWCC	1 cut(s)	266
Eco72I	CACGTG	1 cut(s)	95
EcoT14I	CCWWGG	2 cut(s)	66, 428
ErhI	CCWWGG	2 cut(s)	66, 428
FaeI	CATG	6 cut(s)	112, 127, 257, 412, 432, 567
FatI	CATG	6 cut(s)	108, 123, 253, 408, 428, 563
FauI	CCCGC	1 cut(s)	149
FblI	GTMKAC	1 cut(s)	436
Fnu4HI	GCNGC	5 cut(s)	339, 342, 357, 373, 645
FokI	GGATG	2 cut(s)	401, 585
Fsp4HI	GCNGC	5 cut(s)	339, 342, 357, 373, 645
GluI	GCNGC	5 cut(s)	339, 342, 357, 373, 645
GsuI	CTGGAG	1 cut(s)	354
HaeIII	GGCC	2 cut(s)	300, 470
Hin1II	CATG	6 cut(s)	112, 127, 257, 412, 432, 567
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HindIII	AAGCTT	1 cut(s)	441
HinfI	GANTC	4 cut(s)	32, 157, 541, 560
Hpy166II	GTNNAC	6 cut(s)	85, 205, 437, 481, 498, 582
Hpy188I	TCNGA	1 cut(s)	352
Hpy8I	GTNNAC	6 cut(s)	85, 205, 437, 481, 498, 582
HpyAV	CCTTC	2 cut(s)	121, 378
HpyCH4III	ACNGT	1 cut(s)	401
HpyCH4IV	ACGT	5 cut(s)	9, 94, 150, 321, 530
HpyCH4V	TGCA	3 cut(s)	319, 423, 644
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 650
HpyF3I	CTNAG	2 cut(s)	351, 465
HpySE526I	ACGT	5 cut(s)	9, 94, 150, 321, 530
Hsp92II	CATG	6 cut(s)	112, 127, 257, 412, 432, 567
KspI	CCGCGG	1 cut(s)	81
Kzo9I	GATC	1 cut(s)	347
LmnI	GCTCC	1 cut(s)	335
LpnPI	CCDG	9 cut(s)	73, 201, 282, 314, 318, 330, 445, 579, 624
Lsp1109I	GCAGC	2 cut(s)	353, 368
LweI	GCATC	3 cut(s)	493, 563, 631
MaeII	ACGT	5 cut(s)	9, 94, 150, 321, 530
MaeIII	GTNAC	5 cut(s)	146, 328, 401, 538, 599
MalI	GATC	1 cut(s)	349
MbiI	CCGCTC	1 cut(s)	338
MboI	GATC	1 cut(s)	347
MboII	GAAGA	1 cut(s)	650
MflI	RGATCY	1 cut(s)	347
MhlI	GDGCHC	2 cut(s)	94, 261
MlsI	TGGCCA	1 cut(s)	300
MluCI	AATT	2 cut(s)	247, 288
MluNI	TGGCCA	1 cut(s)	300
MlyI	GAGTC	3 cut(s)	26, 535, 554
MnlI	CCTC	5 cut(s)	209, 346, 388, 460, 562
Mox20I	TGGCCA	1 cut(s)	300
MroXI	GAANNNNTTC	1 cut(s)	485
MscI	TGGCCA	1 cut(s)	300
Msp20I	TGGCCA	1 cut(s)	300
MspA1I	CMGCKG	3 cut(s)	80, 344, 359
MvnI	CGCG	3 cut(s)	80, 372, 558
MwoI	GCNNNNNNNGC	2 cut(s)	98, 650
NcoI	CCATGG	1 cut(s)	428
NdeII	GATC	1 cut(s)	347
NlaIII	CATG	6 cut(s)	112, 127, 257, 412, 432, 567
NmuCI	GTSAC	3 cut(s)	401, 538, 599
PdmI	GAANNNNTTC	1 cut(s)	485
PfeI	GAWTC	1 cut(s)	157
PkrI	GCNGC	5 cut(s)	340, 343, 358, 374, 646
PleI	GAGTC	3 cut(s)	26, 535, 554
PmaCI	CACGTG	1 cut(s)	95
PmlI	CACGTG	1 cut(s)	95
PpsI	GAGTC	3 cut(s)	26, 535, 554
Ppu21I	YACGTR	2 cut(s)	95, 151
Psp1406I	AACGTT	1 cut(s)	530
PspCI	CACGTG	1 cut(s)	95
PspPI	GGNCC	2 cut(s)	266, 469
PsuI	RGATCY	1 cut(s)	347
PvuII	CAGCTG	2 cut(s)	344, 359
SacII	CCGCGG	1 cut(s)	81
SatI	GCNGC	5 cut(s)	339, 342, 357, 373, 645
Sau3AI	GATC	1 cut(s)	347
Sau96I	GGNCC	2 cut(s)	266, 469
SchI	GAGTC	3 cut(s)	26, 535, 554
SduI	GDGCHC	2 cut(s)	94, 261
SfaNI	GCATC	3 cut(s)	493, 563, 631
Sfr303I	CCGCGG	1 cut(s)	81
SgrBI	CCGCGG	1 cut(s)	81
SinI	GGWCC	1 cut(s)	266
Sse9I	AATT	2 cut(s)	247, 288
SsiI	CCGC	7 cut(s)	78, 80, 117, 142, 338, 372, 556
SspI	AATATT	1 cut(s)	627
StyI	CCWWGG	2 cut(s)	66, 428
TaaI	ACNGT	1 cut(s)	401
TaiI	ACGT	5 cut(s)	12, 97, 153, 324, 533
TaqI	TCGA	1 cut(s)	35
TaqII	GACCGA	1 cut(s)	445
TasI	AATT	2 cut(s)	247, 288
TauI	GCSGC	2 cut(s)	341, 375
TfiI	GAWTC	1 cut(s)	157
TscAI	CASTG	4 cut(s)	176, 308, 505, 604
TseFI	GTSAC	3 cut(s)	401, 538, 599
TseI	GCWGC	3 cut(s)	341, 356, 644
Tsp45I	GTSAC	3 cut(s)	401, 538, 599
TspDTI	ATGAA	5 cut(s)	119, 125, 140, 242, 540
TspGWI	ACGGA	1 cut(s)	396
TspRI	CASTG	4 cut(s)	176, 308, 505, 604
VpaK11BI	GGWCC	1 cut(s)	266
XapI	RAATTY	1 cut(s)	247
XmiI	GTMKAC	1 cut(s)	436
XmnI	GAANNNNTTC	1 cut(s)	485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.