RLG00000019197

23 kDa jasmonate-induced protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001765
Physical Location & Seq
Reverse (-)
48089449 .. 48090214
766 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019197

Sequence Viewer

Length: 657 bp
ATGGCGAACGTGTTTGGCAGCCCCATAACCGACTCGACCCTGAAGGCAATGGCAGAGTATGCGGGCAAGACAATAACTGCGGCTGACAGGGCACGCGTGGCAATTAACATGAAAACCGCCAGCATGAAGGATACGAACGCTCGCAGTTACGTACAGAATCTGAAGAAGCAGTGGGGAACTGGAGTATCCACACTTTGCGTCGTTTACAATGCTACTGGAAACACTATGACTTATGTTAGTTCTAAAGATTGGTATGGGCACATTGGACCAGCCCCATACCCAATACAAATTGAAAATGGCCAGTGGGGTGCGTTTTTGCACGTCAAAGAATCTGGAGCGGCATCTGGATCTAATGCAGCTGTTGTGTATCGCGGCAAGAACGGAAATGAAGGCATGGACTGTGACTTCATGATGGCGTGGTCCAACCCATGGCGTAGAGCAGCTTATGACAACTCTGTCTGGGCTGAGGTCGGTGAAGTGAACCACTTCACTAATGCAACATTGGACTACATATATGAGAAGTTAGATGTGAGTCGCTACAACCACCGTGACTCATCAGGGGGATGCTTGTCAATTATATCAACTGGCAGTGACACTTCCCCTGTATTGGAAGCAATGTTCACTTTAGATTCGGCTAATGCCCCGAGTCGATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

219

Amino Acids

23.76

Weight (kDa)

6.41

Isoelectric Point (pI)

24.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nakanori PF21230 31 - 196 5.7e-46 Nakanori-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 455
AccB7I CCANNNNNTGG 1 cut(s) 429
AccBSI CCGCTC 1 cut(s) 338
AccII CGCG 2 cut(s) 96, 372
AciI CCGC 5 cut(s) 62, 80, 117, 338, 372
AclWI GGATC 1 cut(s) 355
AcoI YGGCCR 1 cut(s) 298
AcuI CTGAAG 2 cut(s) 62, 182
AfaI GTAC 1 cut(s) 153
AfiI CCNNNNNNNGG 2 cut(s) 429, 607
AflIII ACRYGT 2 cut(s) 9, 94
AgsI TTSAA 1 cut(s) 293
AjiI CACGTC 1 cut(s) 322
AloI GAACNNNNNNTCC 2 cut(s) 602, 634
AluBI AGCT 2 cut(s) 359, 443
AluI AGCT 2 cut(s) 359, 443
AlwI GGATC 1 cut(s) 355
AlwNI CAGNNNCTG 1 cut(s) 160
Ama87I CYCGRG 1 cut(s) 643
AoxI GGCC 1 cut(s) 298
ApeKI GCWGC 3 cut(s) 18, 356, 440
Asp700I GAANNNNTTC 1 cut(s) 485
AspS9I GGNCC 2 cut(s) 266, 420
AsuHPI GGTGA 1 cut(s) 485
AvaI CYCGRG 1 cut(s) 643
AvaII GGWCC 2 cut(s) 266, 420
BaeGI GKGCMC 2 cut(s) 94, 261
BaeI ACNNNNGTAYC 2 cut(s) 168, 201
BalI TGGCCA 1 cut(s) 300
BbvCI CCTCAGC 1 cut(s) 465
BbvI GCAGC 3 cut(s) 30, 368, 452
BccI CCATC 1 cut(s) 406
BciVI GTATCC 2 cut(s) 124, 196
BfuI GTATCC 2 cut(s) 124, 196
BisI GCNGC 6 cut(s) 19, 81, 339, 357, 373, 441
BlsI GCNGC 6 cut(s) 20, 82, 340, 358, 374, 442
Bme18I GGWCC 2 cut(s) 266, 420
BmeT110I CYCGRG 1 cut(s) 643
BmgBI CACGTC 1 cut(s) 322
BmgT120I GGNCC 2 cut(s) 266, 420
BmsI GCATC 2 cut(s) 350, 554
BpmI CTGGAG 2 cut(s) 201, 354
Bpu10I CCTNAGC 1 cut(s) 465
BsaAI YACGTR 1 cut(s) 151
BsaJI CCNNGG 1 cut(s) 428
Bsc4I CCNNNNNNNGG 2 cut(s) 429, 607
Bse1I ACTGG 4 cut(s) 184, 220, 301, 589
Bse3DI GCAATG 2 cut(s) 54, 621
BseDI CCNNGG 1 cut(s) 428
BseGI GGATG 1 cut(s) 569
BseLI CCNNNNNNNGG 2 cut(s) 429, 607
BseMI GCAATG 2 cut(s) 54, 621
BseMII CTCAG 1 cut(s) 456
BseNI ACTGG 4 cut(s) 184, 220, 301, 589
BseSI GKGCMC 2 cut(s) 94, 261
BseXI GCAGC 3 cut(s) 30, 368, 452
Bsh1236I CGCG 2 cut(s) 96, 372
BshFI GGCC 1 cut(s) 300
BsiHKCI CYCGRG 1 cut(s) 643
BslI CCNNNNNNNGG 2 cut(s) 429, 607
BsnI GGCC 1 cut(s) 300
BsoBI CYCGRG 1 cut(s) 643
Bsp1286I GDGCHC 2 cut(s) 94, 261
Bsp143I GATC 1 cut(s) 347
Bsp19I CCATGG 1 cut(s) 428
BspACI CCGC 5 cut(s) 62, 80, 117, 338, 372
BspANI GGCC 1 cut(s) 300
BspCNI CTCAG 1 cut(s) 457
BspFNI CGCG 2 cut(s) 96, 372
BspHI TCATGA 1 cut(s) 408
BspPI GGATC 1 cut(s) 355
BsrBI CCGCTC 1 cut(s) 338
BsrDI GCAATG 2 cut(s) 54, 621
BsrI ACTGG 4 cut(s) 184, 220, 301, 589
BssECI CCNNGG 1 cut(s) 428
BssMI GATC 1 cut(s) 347
BssT1I CCWWGG 1 cut(s) 428
Bst4CI ACNGT 2 cut(s) 401, 548
BstAPI GCANNNNNTGC 1 cut(s) 59
BstBAI YACGTR 1 cut(s) 151
BstC8I GCNNGC 4 cut(s) 64, 94, 121, 142
BstDEI CTNAG 1 cut(s) 465
BstDSI CCRYGG 1 cut(s) 428
BstF5I GGATG 1 cut(s) 569
BstFNI CGCG 2 cut(s) 96, 372
BstKTI GATC 1 cut(s) 350
BstMBI GATC 1 cut(s) 347
BstMWI GCNNNNNNNGC 3 cut(s) 59, 89, 98
BstSLI GKGCMC 2 cut(s) 94, 261
BstSNI TACGTA 1 cut(s) 151
BstUI CGCG 2 cut(s) 96, 372
BstV1I GCAGC 3 cut(s) 30, 368, 452
BstX2I RGATCY 1 cut(s) 347
BstYI RGATCY 1 cut(s) 347
BsuI GTATCC 2 cut(s) 124, 196
BsuRI GGCC 1 cut(s) 300
BtgI CCRYGG 1 cut(s) 428
BtrI CACGTC 1 cut(s) 322
BtsCI GGATG 1 cut(s) 569
BtsI GCAGTG 2 cut(s) 176, 595
BtsIMutI CAGTG 3 cut(s) 176, 308, 595
Cac8I GCNNGC 4 cut(s) 64, 94, 121, 142
CaiI CAGNNNCTG 1 cut(s) 160
CciI TCATGA 1 cut(s) 408
Cfr13I GGNCC 2 cut(s) 266, 420
CseI GACGC 1 cut(s) 187
Csp6I GTAC 1 cut(s) 152
CviAII CATG 5 cut(s) 109, 124, 394, 409, 429
CviJI RGCY 8 cut(s) 21, 83, 272, 300, 359, 443, 464, 635
CviKI_1 RGCY 8 cut(s) 21, 83, 272, 300, 359, 443, 464, 635
CviQI GTAC 1 cut(s) 152
DdeI CTNAG 1 cut(s) 465
DpnI GATC 1 cut(s) 349
DpnII GATC 1 cut(s) 347
DrdI GACNNNNNNGTC 1 cut(s) 455
DseDI GACNNNNNNGTC 1 cut(s) 455
EaeI YGGCCR 1 cut(s) 298
Eco105I TACGTA 1 cut(s) 151
Eco130I CCWWGG 1 cut(s) 428
Eco47I GGWCC 2 cut(s) 266, 420
Eco57I CTGAAG 2 cut(s) 62, 182
Eco88I CYCGRG 1 cut(s) 643
EcoT14I CCWWGG 1 cut(s) 428
ErhI CCWWGG 1 cut(s) 428
FaeI CATG 5 cut(s) 112, 127, 397, 412, 432
FatI CATG 5 cut(s) 108, 123, 393, 408, 428
FauI CCCGC 1 cut(s) 55
Fnu4HI GCNGC 6 cut(s) 19, 81, 339, 357, 373, 441
FokI GGATG 1 cut(s) 576
Fsp4HI GCNGC 6 cut(s) 19, 81, 339, 357, 373, 441
GluI GCNGC 6 cut(s) 19, 81, 339, 357, 373, 441
GsuI CTGGAG 2 cut(s) 201, 354
HaeIII GGCC 1 cut(s) 300
HgaI GACGC 1 cut(s) 187
Hin1II CATG 5 cut(s) 112, 127, 397, 412, 432
HinfI GANTC 7 cut(s) 32, 157, 329, 532, 551, 629, 646
HphI GGTGA 1 cut(s) 485
Hpy166II GTNNAC 3 cut(s) 205, 481, 621
Hpy188I TCNGA 1 cut(s) 162
Hpy188III TCNNGA 3 cut(s) 333, 345, 409
Hpy8I GTNNAC 3 cut(s) 205, 481, 621
Hpy99I CGWCG 1 cut(s) 203
HpyAV CCTTC 3 cut(s) 37, 121, 383
HpyCH4III ACNGT 2 cut(s) 401, 548
HpyCH4IV ACGT 3 cut(s) 9, 150, 321
HpyCH4V TGCA 3 cut(s) 319, 356, 497
HpyF10VI GCNNNNNNNGC 3 cut(s) 59, 89, 98
HpyF3I CTNAG 1 cut(s) 465
HpySE526I ACGT 3 cut(s) 9, 150, 321
Hsp92II CATG 5 cut(s) 112, 127, 397, 412, 432
Kzo9I GATC 1 cut(s) 347
LmnI GCTCC 1 cut(s) 335
Lsp1109I GCAGC 3 cut(s) 30, 368, 452
LweI GCATC 2 cut(s) 350, 554
MaeII ACGT 3 cut(s) 9, 150, 321
MaeIII GTNAC 4 cut(s) 146, 401, 548, 590
MalI GATC 1 cut(s) 349
MbiI CCGCTC 1 cut(s) 338
MboI GATC 1 cut(s) 347
MboII GAAGA 1 cut(s) 175
MflI RGATCY 1 cut(s) 347
MhlI GDGCHC 2 cut(s) 94, 261
MlsI TGGCCA 1 cut(s) 300
MluCI AATT 3 cut(s) 102, 288, 573
MluI ACGCGT 1 cut(s) 94
MluNI TGGCCA 1 cut(s) 300
MlyI GAGTC 4 cut(s) 26, 541, 545, 655
MmeI TCCRAC 1 cut(s) 447
MnlI CCTC 1 cut(s) 460
Mox20I TGGCCA 1 cut(s) 300
MroXI GAANNNNTTC 1 cut(s) 485
MscI TGGCCA 1 cut(s) 300
MseI TTAA 1 cut(s) 105
Msp20I TGGCCA 1 cut(s) 300
MspA1I CMGCKG 1 cut(s) 359
MvnI CGCG 2 cut(s) 96, 372
MwoI GCNNNNNNNGC 3 cut(s) 59, 89, 98
NcoI CCATGG 1 cut(s) 428
NdeII GATC 1 cut(s) 347
NlaIII CATG 5 cut(s) 112, 127, 397, 412, 432
NmuCI GTSAC 3 cut(s) 401, 548, 590
PagI TCATGA 1 cut(s) 408
PdmI GAANNNNTTC 1 cut(s) 485
PfeI GAWTC 3 cut(s) 157, 329, 629
PflMI CCANNNNNTGG 1 cut(s) 429
PkrI GCNGC 6 cut(s) 20, 82, 340, 358, 374, 442
PleI GAGTC 4 cut(s) 26, 540, 545, 654
PpsI GAGTC 4 cut(s) 26, 540, 545, 654
Ppu21I YACGTR 1 cut(s) 151
PspPI GGNCC 2 cut(s) 266, 420
PstNI CAGNNNCTG 1 cut(s) 160
PsuI RGATCY 1 cut(s) 347
PvuII CAGCTG 1 cut(s) 359
RsaI GTAC 1 cut(s) 153
RsaNI GTAC 1 cut(s) 152
SaqAI TTAA 1 cut(s) 105
SatI GCNGC 6 cut(s) 19, 81, 339, 357, 373, 441
Sau3AI GATC 1 cut(s) 347
Sau96I GGNCC 2 cut(s) 266, 420
SchI GAGTC 4 cut(s) 26, 541, 545, 655
SduI GDGCHC 2 cut(s) 94, 261
SetI ASST 6 cut(s) 12, 153, 324, 361, 445, 471
SfaNI GCATC 2 cut(s) 350, 554
SinI GGWCC 2 cut(s) 266, 420
SnaBI TACGTA 1 cut(s) 151
Sse9I AATT 3 cut(s) 102, 288, 573
SsiI CCGC 5 cut(s) 62, 80, 117, 338, 372
StyI CCWWGG 1 cut(s) 428
TaaI ACNGT 2 cut(s) 401, 548
TaiI ACGT 3 cut(s) 12, 153, 324
TaqI TCGA 2 cut(s) 35, 649
TasI AATT 3 cut(s) 102, 288, 573
TauI GCSGC 3 cut(s) 83, 341, 375
TfiI GAWTC 3 cut(s) 157, 329, 629
Tru1I TTAA 1 cut(s) 105
Tru9I TTAA 1 cut(s) 105
TscAI CASTG 3 cut(s) 176, 308, 595
TseFI GTSAC 3 cut(s) 401, 548, 590
TseI GCWGC 3 cut(s) 18, 356, 440
Tsp45I GTSAC 3 cut(s) 401, 548, 590
TspDTI ATGAA 4 cut(s) 125, 140, 397, 402
TspGWI ACGGA 1 cut(s) 396
TspRI CASTG 3 cut(s) 176, 308, 595
Van91I CCANNNNNTGG 1 cut(s) 429
VpaK11BI GGWCC 2 cut(s) 266, 420
XmnI GAANNNNTTC 1 cut(s) 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.