RLG00000019195

23 kDa jasmonate-induced protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001765
Physical Location & Seq
Reverse (-)
48080746 .. 48081526
781 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019195

Sequence Viewer

Length: 657 bp
ATGGCGAACGTGTTTGGCAACCCCATAACCGACTCGACCCTGAAGGCAATGGCAGAGTATGCAGGCAAGACAATAACTGCGGCTGACAGGGCACGCGTGGCAATTAGCATGAAAACCACCAGCATGAAGGATACAAACGCTCGCAGTTACGTGGAGAATCTGAAGAAGCAGTGGGGAAATGGAGTATCCACACTTTGCGTCGTTTACAATGCTACTGGAAACAGTATGACTTATGTTAGTTCTAAAGATTGGTATGGGCACATTGGACCAGCCCCATACCCAATACAAATTGAAAATGGCCAGTGGGGTGCGTTTTTGCACGTCAAAGAATCTGGAGCGGCATCTGGATCTAATGCAGCTGTGGTGTTTCGCGGCAAGAACGGAAATGAAGGCAAGGACTGTGACTACATGATGGCCTGGTCTAACCCATGGCGTAGAACAGCTTATGACAACTCGGTCTGGGCAGAGGCCCGTGAAGTGAACCACTTCACTAATGATATATTGGACTACATATATGGGAAGTTAGATGCGAGTCGCTACAACTACCGCGACTCATGGGGGGGATGCTTGTCAATCATATCAACTGGCAGTGACACTTCCCCTGTATTGGAAGCAATGTTCACTTTAGATTCAGCCAATGCCCCGAGTGGATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

219

Amino Acids

23.81

Weight (kDa)

6.29

Isoelectric Point (pI)

23.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nakanori PF21230 31 - 196 5.5e-46 Nakanori-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 455
AccBSI CCGCTC 1 cut(s) 338
AccII CGCG 3 cut(s) 96, 372, 549
AciI CCGC 4 cut(s) 80, 338, 372, 547
AclWI GGATC 1 cut(s) 355
AcoI YGGCCR 1 cut(s) 298
AcuI CTGAAG 2 cut(s) 62, 182
AfiI CCNNNNNNNGG 1 cut(s) 607
AflIII ACRYGT 2 cut(s) 9, 94
AgsI TTSAA 1 cut(s) 293
AjiI CACGTC 1 cut(s) 322
AjnI CCWGG 1 cut(s) 416
AloI GAACNNNNNNTCC 2 cut(s) 602, 634
AluBI AGCT 2 cut(s) 359, 443
AluI AGCT 2 cut(s) 359, 443
AlwI GGATC 1 cut(s) 355
Ama87I CYCGRG 1 cut(s) 643
AoxI GGCC 3 cut(s) 298, 414, 468
ApeKI GCWGC 1 cut(s) 356
Asp700I GAANNNNTTC 1 cut(s) 485
AspS9I GGNCC 2 cut(s) 266, 469
AvaI CYCGRG 1 cut(s) 643
AvaII GGWCC 1 cut(s) 266
BaeGI GKGCMC 2 cut(s) 94, 261
BalI TGGCCA 1 cut(s) 300
BbvI GCAGC 1 cut(s) 368
BccI CCATC 1 cut(s) 406
BciT130I CCWGG 1 cut(s) 418
BciVI GTATCC 2 cut(s) 124, 196
BfuI GTATCC 2 cut(s) 124, 196
BisI GCNGC 4 cut(s) 81, 339, 357, 373
BlsI GCNGC 4 cut(s) 82, 340, 358, 374
Bme1390I CCNGG 1 cut(s) 418
Bme18I GGWCC 1 cut(s) 266
BmeT110I CYCGRG 1 cut(s) 643
BmgBI CACGTC 1 cut(s) 322
BmgT120I GGNCC 2 cut(s) 266, 469
BmrFI CCNGG 1 cut(s) 418
BmsI GCATC 4 cut(s) 350, 517, 554, 641
BpmI CTGGAG 1 cut(s) 354
BsaAI YACGTR 1 cut(s) 151
BsaJI CCNNGG 1 cut(s) 428
Bsc4I CCNNNNNNNGG 1 cut(s) 607
Bse1I ACTGG 3 cut(s) 220, 301, 589
Bse3DI GCAATG 2 cut(s) 54, 621
BseBI CCWGG 1 cut(s) 418
BseDI CCNNGG 1 cut(s) 428
BseGI GGATG 2 cut(s) 569, 656
BseLI CCNNNNNNNGG 1 cut(s) 607
BseMI GCAATG 2 cut(s) 54, 621
BseNI ACTGG 3 cut(s) 220, 301, 589
BseSI GKGCMC 2 cut(s) 94, 261
BseXI GCAGC 1 cut(s) 368
Bsh1236I CGCG 3 cut(s) 96, 372, 549
BshFI GGCC 3 cut(s) 300, 416, 470
BsiHKCI CYCGRG 1 cut(s) 643
BslI CCNNNNNNNGG 1 cut(s) 607
BsnI GGCC 3 cut(s) 300, 416, 470
BsoBI CYCGRG 1 cut(s) 643
Bsp1286I GDGCHC 2 cut(s) 94, 261
Bsp143I GATC 1 cut(s) 347
Bsp19I CCATGG 1 cut(s) 428
BspACI CCGC 4 cut(s) 80, 338, 372, 547
BspANI GGCC 3 cut(s) 300, 416, 470
BspFNI CGCG 3 cut(s) 96, 372, 549
BspPI GGATC 1 cut(s) 355
BsrBI CCGCTC 1 cut(s) 338
BsrDI GCAATG 2 cut(s) 54, 621
BsrI ACTGG 3 cut(s) 220, 301, 589
BssECI CCNNGG 1 cut(s) 428
BssMI GATC 1 cut(s) 347
BssT1I CCWWGG 1 cut(s) 428
Bst2UI CCWGG 1 cut(s) 418
Bst4CI ACNGT 2 cut(s) 224, 401
BstAPI GCANNNNNTGC 1 cut(s) 59
BstBAI YACGTR 1 cut(s) 151
BstC8I GCNNGC 3 cut(s) 64, 94, 142
BstDSI CCRYGG 1 cut(s) 428
BstF5I GGATG 2 cut(s) 569, 656
BstFNI CGCG 3 cut(s) 96, 372, 549
BstKTI GATC 1 cut(s) 350
BstMBI GATC 1 cut(s) 347
BstMWI GCNNNNNNNGC 3 cut(s) 59, 89, 98
BstNI CCWGG 1 cut(s) 418
BstSCI CCNGG 1 cut(s) 416
BstSLI GKGCMC 2 cut(s) 94, 261
BstUI CGCG 3 cut(s) 96, 372, 549
BstV1I GCAGC 1 cut(s) 368
BstX2I RGATCY 1 cut(s) 347
BstYI RGATCY 1 cut(s) 347
BsuI GTATCC 2 cut(s) 124, 196
BsuRI GGCC 3 cut(s) 300, 416, 470
BtgI CCRYGG 1 cut(s) 428
BtrI CACGTC 1 cut(s) 322
BtsCI GGATG 2 cut(s) 569, 656
BtsI GCAGTG 2 cut(s) 176, 595
BtsIMutI CAGTG 3 cut(s) 176, 308, 595
Cac8I GCNNGC 3 cut(s) 64, 94, 142
Cfr13I GGNCC 2 cut(s) 266, 469
CseI GACGC 1 cut(s) 187
CviAII CATG 5 cut(s) 109, 124, 409, 429, 555
CviJI RGCY 8 cut(s) 83, 272, 300, 359, 416, 443, 470, 635
CviKI_1 RGCY 8 cut(s) 83, 272, 300, 359, 416, 443, 470, 635
DpnI GATC 1 cut(s) 349
DpnII GATC 1 cut(s) 347
DrdI GACNNNNNNGTC 1 cut(s) 455
DseDI GACNNNNNNGTC 1 cut(s) 455
EaeI YGGCCR 1 cut(s) 298
Eco130I CCWWGG 1 cut(s) 428
Eco47I GGWCC 1 cut(s) 266
Eco57I CTGAAG 2 cut(s) 62, 182
Eco88I CYCGRG 1 cut(s) 643
EcoRII CCWGG 1 cut(s) 416
EcoT14I CCWWGG 1 cut(s) 428
ErhI CCWWGG 1 cut(s) 428
FaeI CATG 5 cut(s) 112, 127, 412, 432, 558
FatI CATG 5 cut(s) 108, 123, 408, 428, 554
Fnu4HI GCNGC 4 cut(s) 81, 339, 357, 373
FokI GGATG 1 cut(s) 576
Fsp4HI GCNGC 4 cut(s) 81, 339, 357, 373
GluI GCNGC 4 cut(s) 81, 339, 357, 373
GsuI CTGGAG 1 cut(s) 354
HaeIII GGCC 3 cut(s) 300, 416, 470
HgaI GACGC 1 cut(s) 187
Hin1II CATG 5 cut(s) 112, 127, 412, 432, 558
HinfI GANTC 6 cut(s) 32, 157, 329, 532, 551, 629
Hpy166II GTNNAC 3 cut(s) 205, 481, 621
Hpy188I TCNGA 1 cut(s) 162
Hpy188III TCNNGA 2 cut(s) 333, 345
Hpy8I GTNNAC 3 cut(s) 205, 481, 621
Hpy99I CGWCG 1 cut(s) 203
HpyAV CCTTC 3 cut(s) 37, 121, 383
HpyCH4III ACNGT 2 cut(s) 224, 401
HpyCH4IV ACGT 3 cut(s) 9, 150, 321
HpyCH4V TGCA 3 cut(s) 62, 319, 356
HpyF10VI GCNNNNNNNGC 3 cut(s) 59, 89, 98
HpySE526I ACGT 3 cut(s) 9, 150, 321
Hsp92II CATG 5 cut(s) 112, 127, 412, 432, 558
Kzo9I GATC 1 cut(s) 347
LmnI GCTCC 1 cut(s) 335
Lsp1109I GCAGC 1 cut(s) 368
LweI GCATC 4 cut(s) 350, 517, 554, 641
MaeII ACGT 3 cut(s) 9, 150, 321
MaeIII GTNAC 3 cut(s) 146, 401, 590
MalI GATC 1 cut(s) 349
MbiI CCGCTC 1 cut(s) 338
MboI GATC 1 cut(s) 347
MboII GAAGA 1 cut(s) 175
MflI RGATCY 1 cut(s) 347
MhlI GDGCHC 2 cut(s) 94, 261
MlsI TGGCCA 1 cut(s) 300
MluCI AATT 2 cut(s) 102, 288
MluI ACGCGT 1 cut(s) 94
MluNI TGGCCA 1 cut(s) 300
MlyI GAGTC 3 cut(s) 26, 541, 545
MnlI CCTC 1 cut(s) 460
Mox20I TGGCCA 1 cut(s) 300
MroXI GAANNNNTTC 1 cut(s) 485
MscI TGGCCA 1 cut(s) 300
MslI CAYNNNNRTG 1 cut(s) 122
Msp20I TGGCCA 1 cut(s) 300
MspA1I CMGCKG 1 cut(s) 359
MspR9I CCNGG 1 cut(s) 418
MvaI CCWGG 1 cut(s) 418
MvnI CGCG 3 cut(s) 96, 372, 549
MwoI GCNNNNNNNGC 3 cut(s) 59, 89, 98
NcoI CCATGG 1 cut(s) 428
NdeII GATC 1 cut(s) 347
NlaIII CATG 5 cut(s) 112, 127, 412, 432, 558
NmuCI GTSAC 2 cut(s) 401, 590
PdmI GAANNNNTTC 1 cut(s) 485
PfeI GAWTC 3 cut(s) 157, 329, 629
PkrI GCNGC 4 cut(s) 82, 340, 358, 374
PleI GAGTC 3 cut(s) 26, 540, 545
PpsI GAGTC 3 cut(s) 26, 540, 545
Ppu21I YACGTR 1 cut(s) 151
Psp6I CCWGG 1 cut(s) 416
PspGI CCWGG 1 cut(s) 416
PspPI GGNCC 2 cut(s) 266, 469
PsuI RGATCY 1 cut(s) 347
PvuII CAGCTG 1 cut(s) 359
RseI CAYNNNNRTG 1 cut(s) 122
SatI GCNGC 4 cut(s) 81, 339, 357, 373
Sau3AI GATC 1 cut(s) 347
Sau96I GGNCC 2 cut(s) 266, 469
SchI GAGTC 3 cut(s) 26, 541, 545
ScrFI CCNGG 1 cut(s) 418
SduI GDGCHC 2 cut(s) 94, 261
SetI ASST 5 cut(s) 12, 153, 324, 361, 445
SfaNI GCATC 4 cut(s) 350, 517, 554, 641
SinI GGWCC 1 cut(s) 266
SmiMI CAYNNNNRTG 1 cut(s) 122
Sse9I AATT 2 cut(s) 102, 288
SsiI CCGC 4 cut(s) 80, 338, 372, 547
StyD4I CCNGG 1 cut(s) 416
StyI CCWWGG 1 cut(s) 428
TaaI ACNGT 2 cut(s) 224, 401
TaiI ACGT 3 cut(s) 12, 153, 324
TaqI TCGA 1 cut(s) 35
TaqII GACCGA 1 cut(s) 445
TasI AATT 2 cut(s) 102, 288
TauI GCSGC 3 cut(s) 83, 341, 375
TfiI GAWTC 3 cut(s) 157, 329, 629
TscAI CASTG 3 cut(s) 176, 308, 595
TseFI GTSAC 2 cut(s) 401, 590
TseI GCWGC 1 cut(s) 356
Tsp45I GTSAC 2 cut(s) 401, 590
TspDTI ATGAA 3 cut(s) 125, 140, 402
TspGWI ACGGA 1 cut(s) 396
TspRI CASTG 3 cut(s) 176, 308, 595
VpaK11BI GGWCC 1 cut(s) 266
XmnI GAANNNNTTC 1 cut(s) 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.