MD17G1147700.v1.1

23 kDa jasmonate-induced protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0001765
Physical Location & Seq
Reverse (-)
13434388 .. 13435502
1115 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1147700.v1.1.491

Sequence Viewer

Length: 567 bp
ATGGCGTATAACGTTTTTGGCAACCCCATCACGAATGAAACTTTGGAGGGGATGCCAGAGTATGCCGGCAAGACAATAGGAAAATTAGACAGGGCACTCGTGGCACTGAATATGAAAAATGCCGCGGAAAAGGACTTCAACGCTCGAACACATGTGGAAAAATTGAAGGAGCAGTATGGCGACGGAGTGTCCACACTCTGCCTTGTTTACAATGCAACTGGGGATACCATAACATATTCTGATAAGAAAGATTGGTTGGGGCACATCGGAAAGGCACCATACGTAGCACTGATTGCAAATGGTCAGTGGGGTGCGTTTCTGCACGTCAAAACTGCCGGTGAGTCTTCTGGATCCACTGCGGCTGTTGTGTACCGAGGCACGGATAAGAATGGTACCGAATGTGATTGGATGTTGTCCTGGAGCAACCCATGGGGAAGGACTAAATGGGACAACACGGTCTATACAGAGATTCGCGAACCTGGCCACTTTGAAAAGGAAGGAACTTGGGACATAATCTATAATTTCTTGTGTCAAACTCGTCCGTACAGCGAGGACACCTGGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

189

Amino Acids

21.12

Weight (kDa)

5.39

Isoelectric Point (pI)

14.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nakanori PF21230 33 - 178 5.6e-50 Nakanori-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 455
Acc65I GGTACC 1 cut(s) 392
AccB1I GGYRCC 2 cut(s) 274, 392
AccII CGCG 2 cut(s) 125, 474
AciI CCGC 3 cut(s) 123, 125, 359
AclI AACGTT 1 cut(s) 12
AclWI GGATC 2 cut(s) 345, 358
AcoI YGGCCR 1 cut(s) 481
AfaI GTAC 3 cut(s) 371, 394, 545
AfiI CCNNNNNNNGG 1 cut(s) 379
AflIII ACRYGT 1 cut(s) 151
AgsI TTSAA 3 cut(s) 139, 166, 491
AhdI GACNNNNNGTC 1 cut(s) 187
AjiI CACGTC 1 cut(s) 325
AjnI CCWGG 3 cut(s) 416, 478, 557
AjuI GAANNNNNNNTTGG 4 cut(s) 26, 58, 239, 271
AlwI GGATC 2 cut(s) 345, 358
AoxI GGCC 1 cut(s) 481
Asp718I GGTACC 1 cut(s) 392
AsuHPI GGTGA 1 cut(s) 350
BaeGI GKGCMC 2 cut(s) 97, 264
BalI TGGCCA 1 cut(s) 483
BamHI GGATCC 1 cut(s) 350
BanI GGYRCC 2 cut(s) 274, 392
BauI CACGAG 1 cut(s) 98
BbsI GAAGAC 1 cut(s) 336
BccI CCATC 1 cut(s) 35
BciT130I CCWGG 3 cut(s) 418, 480, 559
BciVI GTATCC 1 cut(s) 217
BfuI GTATCC 1 cut(s) 217
BisI GCNGC 2 cut(s) 123, 360
BlsI GCNGC 2 cut(s) 124, 361
Bme1390I CCNGG 3 cut(s) 418, 480, 559
BmeRI GACNNNNNGTC 1 cut(s) 187
BmgBI CACGTC 1 cut(s) 325
BmiI GGNNCC 3 cut(s) 276, 352, 394
BmrFI CCNGG 3 cut(s) 418, 480, 559
BmrI ACTGGG 1 cut(s) 228
BmsI GCATC 1 cut(s) 42
BmuI ACTGGG 1 cut(s) 228
BpiI GAAGAC 1 cut(s) 336
BpmI CTGGAG 1 cut(s) 439
BsaAI YACGTR 1 cut(s) 283
BsaJI CCNNGG 3 cut(s) 123, 373, 428
Bsc4I CCNNNNNNNGG 1 cut(s) 379
Bse118I RCCGGY 2 cut(s) 65, 335
Bse1I ACTGG 1 cut(s) 223
BseBI CCWGG 3 cut(s) 418, 480, 559
BseDI CCNNGG 3 cut(s) 123, 373, 428
BseGI GGATG 2 cut(s) 57, 414
BseLI CCNNNNNNNGG 1 cut(s) 379
BseNI ACTGG 1 cut(s) 223
BseSI GKGCMC 2 cut(s) 97, 264
BsgI GTGCAG 1 cut(s) 305
Bsh1236I CGCG 2 cut(s) 125, 474
BshFI GGCC 1 cut(s) 483
BshNI GGYRCC 2 cut(s) 274, 392
BsiSI CCGG 2 cut(s) 66, 336
BslFI GGGAC 2 cut(s) 461, 521
BslI CCNNNNNNNGG 1 cut(s) 379
BsmFI GGGAC 2 cut(s) 461, 521
BsnI GGCC 1 cut(s) 483
Bsp1286I GDGCHC 2 cut(s) 97, 264
Bsp143I GATC 1 cut(s) 350
Bsp19I CCATGG 1 cut(s) 428
Bsp68I TCGCGA 1 cut(s) 474
BspACI CCGC 3 cut(s) 123, 125, 359
BspANI GGCC 1 cut(s) 483
BspFNI CGCG 2 cut(s) 125, 474
BspLI GGNNCC 3 cut(s) 276, 352, 394
BspPI GGATC 2 cut(s) 345, 358
BspT107I GGYRCC 2 cut(s) 274, 392
BsrFI RCCGGY 2 cut(s) 65, 335
BsrI ACTGG 1 cut(s) 223
BssAI RCCGGY 2 cut(s) 65, 335
BssECI CCNNGG 3 cut(s) 123, 373, 428
BssMI GATC 1 cut(s) 350
BssSI CACGAG 1 cut(s) 98
BssT1I CCWWGG 1 cut(s) 428
Bst2BI CACGAG 1 cut(s) 98
Bst2UI CCWGG 3 cut(s) 418, 480, 559
Bst4CI ACNGT 1 cut(s) 457
BstAPI GCANNNNNTGC 1 cut(s) 293
BstBAI YACGTR 1 cut(s) 283
BstC8I GCNNGC 1 cut(s) 67
BstDSI CCRYGG 2 cut(s) 123, 428
BstF5I GGATG 2 cut(s) 57, 414
BstFNI CGCG 2 cut(s) 125, 474
BstKTI GATC 1 cut(s) 353
BstMBI GATC 1 cut(s) 350
BstMWI GCNNNNNNNGC 3 cut(s) 101, 293, 480
BstNI CCWGG 3 cut(s) 418, 480, 559
BstNSI RCATGY 1 cut(s) 155
BstSCI CCNGG 3 cut(s) 416, 478, 557
BstSLI GKGCMC 2 cut(s) 97, 264
BstSNI TACGTA 1 cut(s) 283
BstUI CGCG 2 cut(s) 125, 474
BstV2I GAAGAC 1 cut(s) 336
BstX2I RGATCY 1 cut(s) 350
BstYI RGATCY 1 cut(s) 350
BsuI GTATCC 1 cut(s) 217
BsuRI GGCC 1 cut(s) 483
BtgI CCRYGG 2 cut(s) 123, 428
BtrI CACGTC 1 cut(s) 325
BtsCI GGATG 2 cut(s) 57, 414
BtsI GCAGTG 1 cut(s) 354
BtsIMutI CAGTG 4 cut(s) 104, 287, 311, 354
BtuMI TCGCGA 1 cut(s) 474
Cac8I GCNNGC 1 cut(s) 67
Cfr10I RCCGGY 2 cut(s) 65, 335
Cfr42I CCGCGG 1 cut(s) 126
Csp6I GTAC 3 cut(s) 370, 393, 544
CviAII CATG 2 cut(s) 152, 429
CviJI RGCY 2 cut(s) 362, 483
CviKI_1 RGCY 2 cut(s) 362, 483
CviQI GTAC 3 cut(s) 370, 393, 544
DpnI GATC 1 cut(s) 352
DpnII GATC 1 cut(s) 350
DrdI GACNNNNNNGTC 1 cut(s) 455
DriI GACNNNNNGTC 1 cut(s) 187
DseDI GACNNNNNNGTC 1 cut(s) 455
EaeI YGGCCR 1 cut(s) 481
Eam1105I GACNNNNNGTC 1 cut(s) 187
Eco105I TACGTA 1 cut(s) 283
Eco130I CCWWGG 1 cut(s) 428
EcoRII CCWGG 3 cut(s) 416, 478, 557
EcoT14I CCWWGG 1 cut(s) 428
ErhI CCWWGG 1 cut(s) 428
FaeI CATG 2 cut(s) 155, 432
FaqI GGGAC 2 cut(s) 461, 521
FatI CATG 2 cut(s) 151, 428
Fnu4HI GCNGC 2 cut(s) 123, 360
FokI GGATG 2 cut(s) 64, 421
Fsp4HI GCNGC 2 cut(s) 123, 360
GluI GCNGC 2 cut(s) 123, 360
GsuI CTGGAG 1 cut(s) 439
HaeIII GGCC 1 cut(s) 483
HapII CCGG 2 cut(s) 66, 336
Hin1II CATG 2 cut(s) 155, 432
HinfI GANTC 2 cut(s) 341, 469
HpaII CCGG 2 cut(s) 66, 336
HphI GGTGA 1 cut(s) 350
Hpy166II GTNNAC 3 cut(s) 192, 208, 370
Hpy188I TCNGA 2 cut(s) 241, 269
Hpy188III TCNNGA 3 cut(s) 31, 348, 473
Hpy8I GTNNAC 3 cut(s) 192, 208, 370
Hpy99I CGWCG 1 cut(s) 185
HpyAV CCTTC 3 cut(s) 160, 429, 491
HpyCH4III ACNGT 1 cut(s) 457
HpyCH4IV ACGT 3 cut(s) 12, 282, 324
HpyCH4V TGCA 3 cut(s) 215, 296, 322
HpyF10VI GCNNNNNNNGC 3 cut(s) 101, 293, 480
HpySE526I ACGT 3 cut(s) 12, 282, 324
Hsp92II CATG 2 cut(s) 155, 432
KpnI GGTACC 1 cut(s) 396
KroI GCCGGC 1 cut(s) 65
KroNI GCCGGC 1 cut(s) 67
KspI CCGCGG 1 cut(s) 126
Kzo9I GATC 1 cut(s) 350
LmnI GCTCC 2 cut(s) 169, 420
LweI GCATC 1 cut(s) 42
MaeII ACGT 3 cut(s) 12, 282, 324
MalI GATC 1 cut(s) 352
MboI GATC 1 cut(s) 350
MboII GAAGA 1 cut(s) 336
MflI RGATCY 1 cut(s) 350
MhlI GDGCHC 2 cut(s) 97, 264
MlsI TGGCCA 1 cut(s) 483
MluCI AATT 4 cut(s) 83, 161, 520, 562
MluNI TGGCCA 1 cut(s) 483
MlyI GAGTC 1 cut(s) 350
MnlI CCTC 3 cut(s) 40, 368, 544
Mox20I TGGCCA 1 cut(s) 483
MroNI GCCGGC 1 cut(s) 65
MscI TGGCCA 1 cut(s) 483
Msp20I TGGCCA 1 cut(s) 483
MspA1I CMGCKG 1 cut(s) 125
MspI CCGG 2 cut(s) 66, 336
MspR9I CCNGG 3 cut(s) 418, 480, 559
MvaI CCWGG 3 cut(s) 418, 480, 559
MvnI CGCG 2 cut(s) 125, 474
MwoI GCNNNNNNNGC 3 cut(s) 101, 293, 480
NaeI GCCGGC 1 cut(s) 67
NcoI CCATGG 1 cut(s) 428
NdeII GATC 1 cut(s) 350
NgoMIV GCCGGC 1 cut(s) 65
NlaIII CATG 2 cut(s) 155, 432
NlaIV GGNNCC 3 cut(s) 276, 352, 394
NruI TCGCGA 1 cut(s) 474
NspI RCATGY 1 cut(s) 155
PciI ACATGT 1 cut(s) 151
PdiI GCCGGC 1 cut(s) 67
PfeI GAWTC 1 cut(s) 469
PfoI TCCNGGA 1 cut(s) 416
PkrI GCNGC 2 cut(s) 124, 361
PleI GAGTC 1 cut(s) 349
PpsI GAGTC 1 cut(s) 349
Ppu21I YACGTR 1 cut(s) 283
PscI ACATGT 1 cut(s) 151
Psp1406I AACGTT 1 cut(s) 12
Psp6I CCWGG 3 cut(s) 416, 478, 557
PspGI CCWGG 3 cut(s) 416, 478, 557
PspN4I GGNNCC 3 cut(s) 276, 352, 394
PsuI RGATCY 1 cut(s) 350
RruI TCGCGA 1 cut(s) 474
RsaI GTAC 3 cut(s) 371, 394, 545
RsaNI GTAC 3 cut(s) 370, 393, 544
SacII CCGCGG 1 cut(s) 126
SatI GCNGC 2 cut(s) 123, 360
Sau3AI GATC 1 cut(s) 350
SchI GAGTC 1 cut(s) 350
ScrFI CCNGG 3 cut(s) 418, 480, 559
SduI GDGCHC 2 cut(s) 97, 264
SetI ASST 5 cut(s) 15, 285, 327, 481, 560
SfaNI GCATC 1 cut(s) 42
Sfr303I CCGCGG 1 cut(s) 126
SgrBI CCGCGG 1 cut(s) 126
SnaBI TACGTA 1 cut(s) 283
Sse9I AATT 4 cut(s) 83, 161, 520, 562
SsiI CCGC 3 cut(s) 123, 125, 359
StyD4I CCNGG 3 cut(s) 416, 478, 557
StyI CCWWGG 1 cut(s) 428
TaaI ACNGT 1 cut(s) 457
TaiI ACGT 3 cut(s) 15, 285, 327
TaqI TCGA 1 cut(s) 145
TasI AATT 4 cut(s) 83, 161, 520, 562
TauI GCSGC 2 cut(s) 125, 362
TfiI GAWTC 1 cut(s) 469
TscAI CASTG 4 cut(s) 111, 294, 311, 361
TspDTI ATGAA 2 cut(s) 51, 128
TspGWI ACGGA 3 cut(s) 198, 395, 531
TspRI CASTG 4 cut(s) 111, 294, 311, 361
XceI RCATGY 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.