Rmu_sc0004032.1_g000004

23 kDa jasmonate-induced protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004032.1
OG0001765
Physical Location & Seq
Reverse (-)
9467 .. 9757
291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004032.1_g000004.1.cds

Sequence Viewer

Length: 291 bp
atggcgaacgtgtttggcatccccataatcgactcaaccctagcagcaatgccagagtatgccaacaagcaaataaccgctgttgatagggcacgcgtggctctcaacgtgcaaagcgctgacatgaaggctgccaacgcactcacttacgtggagaatttgaagaagcagtacggaggtgaagtacccgccacactttgcctcctttacaatgctactgggaacactttaacatttgttactgttaaagatgagtacgggcacattgttttgtgcggaagcgttaaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.31

Weight (kDa)

6.53

Isoelectric Point (pI)

33.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 96
AciI CCGC 3 cut(s) 78, 189, 276
AcsI RAATTY 1 cut(s) 157
AfaI GTAC 3 cut(s) 173, 186, 257
AfeI AGCGCT 1 cut(s) 118
AflIII ACRYGT 2 cut(s) 9, 94
AgsI TTSAA 1 cut(s) 163
AleI CACNNNNGTG 1 cut(s) 149
Aor51HI AGCGCT 1 cut(s) 118
ApeKI GCWGC 2 cut(s) 44, 131
ApoI RAATTY 1 cut(s) 157
AspLEI GCGC 1 cut(s) 119
AsuHPI GGTGA 1 cut(s) 191
BaeGI GKGCMC 2 cut(s) 94, 264
BarI GAAGNNNNNNTAC 2 cut(s) 155, 187
BbvI GCAGC 2 cut(s) 56, 118
BfaI CTAG 1 cut(s) 41
BfoI RGCGCY 1 cut(s) 120
BisI GCNGC 2 cut(s) 45, 132
BlsI GCNGC 2 cut(s) 46, 133
BmrI ACTGGG 1 cut(s) 228
BmsI GCATC 1 cut(s) 27
BmuI ACTGGG 1 cut(s) 228
BsaAI YACGTR 1 cut(s) 151
BsaXI ACNNNNNCTCC 4 cut(s) 168, 186, 198, 216
Bse1I ACTGG 1 cut(s) 223
Bse3DI GCAATG 1 cut(s) 54
BseGI GGATG 1 cut(s) 18
BseMI GCAATG 1 cut(s) 54
BseNI ACTGG 1 cut(s) 223
BseSI GKGCMC 2 cut(s) 94, 264
BseXI GCAGC 2 cut(s) 56, 118
Bsh1236I CGCG 1 cut(s) 96
Bsp1286I GDGCHC 2 cut(s) 94, 264
BspACI CCGC 3 cut(s) 78, 189, 276
BspFNI CGCG 1 cut(s) 96
BsrDI GCAATG 1 cut(s) 54
BsrI ACTGG 1 cut(s) 223
Bst4CI ACNGT 1 cut(s) 244
BstBAI YACGTR 1 cut(s) 151
BstC8I GCNNGC 1 cut(s) 94
BstF5I GGATG 1 cut(s) 18
BstFNI CGCG 1 cut(s) 96
BstH2I RGCGCY 1 cut(s) 120
BstHHI GCGC 1 cut(s) 119
BstMWI GCNNNNNNNGC 2 cut(s) 98, 137
BstSLI GKGCMC 2 cut(s) 94, 264
BstUI CGCG 1 cut(s) 96
BstV1I GCAGC 2 cut(s) 56, 118
BtsCI GGATG 1 cut(s) 18
Cac8I GCNNGC 1 cut(s) 94
CfoI GCGC 1 cut(s) 119
Csp6I GTAC 3 cut(s) 172, 185, 256
CviAII CATG 1 cut(s) 124
CviJI RGCY 2 cut(s) 101, 131
CviKI_1 RGCY 2 cut(s) 101, 131
CviQI GTAC 3 cut(s) 172, 185, 256
Eco47III AGCGCT 1 cut(s) 118
FaeI CATG 1 cut(s) 127
FaiI YATR 3 cut(s) 26, 60, 125
FatI CATG 1 cut(s) 123
FauI CCCGC 1 cut(s) 196
Fnu4HI GCNGC 2 cut(s) 45, 132
FokI GGATG 1 cut(s) 5
Fsp4HI GCNGC 2 cut(s) 45, 132
FspBI CTAG 1 cut(s) 41
GlaI GCGC 1 cut(s) 118
GluI GCNGC 2 cut(s) 45, 132
HaeII RGCGCY 1 cut(s) 120
HhaI GCGC 1 cut(s) 119
Hin1II CATG 1 cut(s) 127
Hin6I GCGC 1 cut(s) 117
HinP1I GCGC 1 cut(s) 117
HinfI GANTC 1 cut(s) 32
HphI GGTGA 1 cut(s) 191
HpyAV CCTTC 1 cut(s) 121
HpyCH4III ACNGT 1 cut(s) 244
HpyCH4IV ACGT 3 cut(s) 9, 108, 150
HpyCH4V TGCA 1 cut(s) 112
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 137
HpySE526I ACGT 3 cut(s) 9, 108, 150
Hsp92II CATG 1 cut(s) 127
HspAI GCGC 1 cut(s) 117
LpnPI CCDG 2 cut(s) 66, 204
Lsp1109I GCAGC 2 cut(s) 56, 118
LweI GCATC 1 cut(s) 27
MaeI CTAG 1 cut(s) 41
MaeII ACGT 3 cut(s) 9, 108, 150
MaeIII GTNAC 1 cut(s) 238
MboII GAAGA 1 cut(s) 175
MhlI GDGCHC 2 cut(s) 94, 264
MluCI AATT 1 cut(s) 157
MluI ACGCGT 1 cut(s) 94
MlyI GAGTC 1 cut(s) 26
MnlI CCTC 2 cut(s) 170, 212
MseI TTAA 3 cut(s) 230, 246, 285
MslI CAYNNNNRTG 1 cut(s) 149
MspA1I CMGCKG 1 cut(s) 80
MvnI CGCG 1 cut(s) 96
MwoI GCNNNNNNNGC 2 cut(s) 98, 137
NlaIII CATG 1 cut(s) 127
OliI CACNNNNGTG 1 cut(s) 149
PkrI GCNGC 2 cut(s) 46, 133
PleI GAGTC 1 cut(s) 26
PpsI GAGTC 1 cut(s) 26
Ppu21I YACGTR 1 cut(s) 151
RsaI GTAC 3 cut(s) 173, 186, 257
RsaNI GTAC 3 cut(s) 172, 185, 256
RseI CAYNNNNRTG 1 cut(s) 149
SaqAI TTAA 3 cut(s) 230, 246, 285
SatI GCNGC 2 cut(s) 45, 132
SchI GAGTC 1 cut(s) 26
SduI GDGCHC 2 cut(s) 94, 264
SetI ASST 4 cut(s) 12, 111, 153, 181
SfaNI GCATC 1 cut(s) 27
SmiMI CAYNNNNRTG 1 cut(s) 149
Sse9I AATT 1 cut(s) 157
SsiI CCGC 3 cut(s) 78, 189, 276
SspMI CTAG 1 cut(s) 41
TaaI ACNGT 1 cut(s) 244
TaiI ACGT 3 cut(s) 12, 111, 153
TaqI TCGA 1 cut(s) 30
TasI AATT 1 cut(s) 157
Tru1I TTAA 3 cut(s) 230, 246, 285
Tru9I TTAA 3 cut(s) 230, 246, 285
TseI GCWGC 2 cut(s) 44, 131
TspDTI ATGAA 1 cut(s) 140
TspGWI ACGGA 1 cut(s) 189
XapI RAATTY 1 cut(s) 157
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.