Rmu_sc0001516.1_g000051

23 kDa jasmonate-induced protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001516.1
OG0001765
Physical Location & Seq
Reverse (-)
197289 .. 198019
731 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001516.1_g000051.1.cds

Sequence Viewer

Length: 564 bp
atggtggcaaacgtgtttggaaaccccataaccgattcgaccctggaggcaatggtagagtatacgggcaggaaaataacagcggctgacagggcacgcgtggccattaacatgaaaaacgccaactcaaaggatacgaacgcccgcacttacgtggagaatctgaagaagcagtggggaactggagtatccacactttgtgtcatttacaatgctactgggaacactatgacgtttgttcgttctaaagattgtggagcggcatctggatctaatgcagctgttgtgtttcgaggcaagaacggaaatgaaggcaaaaactgtgactacatgatggcgtggtccaccccatggcgtagagcgaagtatgacaactcggtctgggctgaggccggtccagtgaactacttcactgatgcaaaattgaactccatatatggggagttatttgcgggtcgctactactaccgcgagtcatgggggggatgcttgtcaattatatcaactggcagttacacttcccctgtattggaagcaatgttcaccttagagatagcttattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

187

Amino Acids

20.62

Weight (kDa)

8.83

Isoelectric Point (pI)

16.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 377
AccB7I CCANNNNNTGG 1 cut(s) 351
AccBSI CCGCTC 1 cut(s) 260
AccI GTMKAC 1 cut(s) 62
AccII CGCG 2 cut(s) 99, 471
AciI CCGC 5 cut(s) 83, 145, 260, 452, 469
AclWI GGATC 1 cut(s) 277
AcoI YGGCCR 1 cut(s) 102
AcuI CTGAAG 1 cut(s) 185
AdeI CACNNNGTG 1 cut(s) 200
AfiI CCNNNNNNNGG 3 cut(s) 351, 438, 529
AflIII ACRYGT 2 cut(s) 12, 97
AgsI TTSAA 1 cut(s) 427
AjnI CCWGG 1 cut(s) 42
AleI CACNNNNGTG 1 cut(s) 152
AloI GAACNNNNNNTCC 2 cut(s) 524, 556
AluBI AGCT 2 cut(s) 281, 557
AluI AGCT 2 cut(s) 281, 557
AlwI GGATC 1 cut(s) 277
AlwNI CAGNNNCTG 1 cut(s) 86
AoxI GGCC 2 cut(s) 102, 390
ApeKI GCWGC 1 cut(s) 278
Asp700I GAANNNNTTC 1 cut(s) 407
AspS9I GGNCC 2 cut(s) 342, 395
AsuHPI GGTGA 1 cut(s) 535
AvaII GGWCC 2 cut(s) 342, 395
BaeGI GKGCMC 1 cut(s) 97
BaeI ACNNNNGTAYC 2 cut(s) 171, 204
BalI TGGCCA 1 cut(s) 104
BbvCI CCTCAGC 1 cut(s) 387
BbvI GCAGC 1 cut(s) 290
BccI CCATC 1 cut(s) 328
BciT130I CCWGG 1 cut(s) 44
BciVI GTATCC 2 cut(s) 127, 199
BfuI GTATCC 2 cut(s) 127, 199
BisI GCNGC 3 cut(s) 84, 261, 279
BlsI GCNGC 3 cut(s) 85, 262, 280
Bme1390I CCNGG 1 cut(s) 44
Bme18I GGWCC 2 cut(s) 342, 395
BmgT120I GGNCC 2 cut(s) 342, 395
BmrFI CCNGG 1 cut(s) 44
BmrI ACTGGG 1 cut(s) 228
BmsI GCATC 3 cut(s) 272, 406, 476
BmuI ACTGGG 1 cut(s) 228
BpmI CTGGAG 2 cut(s) 65, 204
Bpu10I CCTNAGC 1 cut(s) 387
BsaAI YACGTR 1 cut(s) 154
BsaJI CCNNGG 2 cut(s) 42, 350
Bsc4I CCNNNNNNNGG 3 cut(s) 351, 438, 529
Bse118I RCCGGY 1 cut(s) 392
Bse1I ACTGG 4 cut(s) 187, 223, 398, 511
Bse3DI GCAATG 2 cut(s) 57, 543
BseBI CCWGG 1 cut(s) 44
BseDI CCNNGG 2 cut(s) 42, 350
BseGI GGATG 1 cut(s) 491
BseLI CCNNNNNNNGG 3 cut(s) 351, 438, 529
BseMI GCAATG 2 cut(s) 57, 543
BseMII CTCAG 1 cut(s) 378
BseNI ACTGG 4 cut(s) 187, 223, 398, 511
BseSI GKGCMC 1 cut(s) 97
BseXI GCAGC 1 cut(s) 290
Bsh1236I CGCG 2 cut(s) 99, 471
BshFI GGCC 2 cut(s) 104, 392
BsiSI CCGG 1 cut(s) 393
BslI CCNNNNNNNGG 3 cut(s) 351, 438, 529
BsnI GGCC 2 cut(s) 104, 392
Bsp1286I GDGCHC 1 cut(s) 97
Bsp143I GATC 1 cut(s) 269
Bsp19I CCATGG 1 cut(s) 350
BspACI CCGC 5 cut(s) 83, 145, 260, 452, 469
BspANI GGCC 2 cut(s) 104, 392
BspCNI CTCAG 1 cut(s) 379
BspFNI CGCG 2 cut(s) 99, 471
BspPI GGATC 1 cut(s) 277
BsrBI CCGCTC 1 cut(s) 260
BsrDI GCAATG 2 cut(s) 57, 543
BsrFI RCCGGY 1 cut(s) 392
BsrI ACTGG 4 cut(s) 187, 223, 398, 511
BssAI RCCGGY 1 cut(s) 392
BssECI CCNNGG 2 cut(s) 42, 350
BssMI GATC 1 cut(s) 269
BssNAI GTATAC 1 cut(s) 63
BssT1I CCWWGG 1 cut(s) 350
Bst1107I GTATAC 1 cut(s) 63
Bst2UI CCWGG 1 cut(s) 44
Bst4CI ACNGT 1 cut(s) 323
BstBAI YACGTR 1 cut(s) 154
BstC8I GCNNGC 2 cut(s) 97, 145
BstDEI CTNAG 2 cut(s) 387, 547
BstDSI CCRYGG 1 cut(s) 350
BstF5I GGATG 1 cut(s) 491
BstFNI CGCG 2 cut(s) 99, 471
BstKTI GATC 1 cut(s) 272
BstMBI GATC 1 cut(s) 269
BstMWI GCNNNNNNNGC 2 cut(s) 92, 101
BstNI CCWGG 1 cut(s) 44
BstSCI CCNGG 1 cut(s) 42
BstSLI GKGCMC 1 cut(s) 97
BstUI CGCG 2 cut(s) 99, 471
BstV1I GCAGC 1 cut(s) 290
BstX2I RGATCY 1 cut(s) 269
BstYI RGATCY 1 cut(s) 269
BstZ17I GTATAC 1 cut(s) 63
BsuI GTATCC 2 cut(s) 127, 199
BsuRI GGCC 2 cut(s) 104, 392
BtgI CCRYGG 1 cut(s) 350
BtsCI GGATG 1 cut(s) 491
BtsI GCAGTG 1 cut(s) 179
BtsIMutI CAGTG 3 cut(s) 179, 405, 411
Cac8I GCNNGC 2 cut(s) 97, 145
CaiI CAGNNNCTG 1 cut(s) 86
Cfr10I RCCGGY 1 cut(s) 392
Cfr13I GGNCC 2 cut(s) 342, 395
CviAII CATG 4 cut(s) 112, 331, 351, 477
CviJI RGCY 6 cut(s) 86, 104, 281, 386, 392, 557
CviKI_1 RGCY 6 cut(s) 86, 104, 281, 386, 392, 557
DdeI CTNAG 2 cut(s) 387, 547
DpnI GATC 1 cut(s) 271
DpnII GATC 1 cut(s) 269
DraIII CACNNNGTG 1 cut(s) 200
DrdI GACNNNNNNGTC 1 cut(s) 377
DseDI GACNNNNNNGTC 1 cut(s) 377
EaeI YGGCCR 1 cut(s) 102
Eco130I CCWWGG 1 cut(s) 350
Eco47I GGWCC 2 cut(s) 342, 395
Eco57I CTGAAG 1 cut(s) 185
EcoRII CCWGG 1 cut(s) 42
EcoT14I CCWWGG 1 cut(s) 350
ErhI CCWWGG 1 cut(s) 350
FaeI CATG 4 cut(s) 115, 334, 354, 480
FatI CATG 4 cut(s) 111, 330, 350, 476
FauI CCCGC 2 cut(s) 152, 445
FblI GTMKAC 1 cut(s) 62
Fnu4HI GCNGC 3 cut(s) 84, 261, 279
FokI GGATG 1 cut(s) 498
Fsp4HI GCNGC 3 cut(s) 84, 261, 279
GluI GCNGC 3 cut(s) 84, 261, 279
GsuI CTGGAG 2 cut(s) 65, 204
HaeIII GGCC 2 cut(s) 104, 392
HapII CCGG 1 cut(s) 393
Hin1II CATG 4 cut(s) 115, 334, 354, 480
HinfI GANTC 3 cut(s) 35, 160, 473
HpaII CCGG 1 cut(s) 393
HphI GGTGA 1 cut(s) 535
Hpy166II GTNNAC 4 cut(s) 63, 345, 403, 543
Hpy188I TCNGA 1 cut(s) 165
Hpy188III TCNNGA 1 cut(s) 267
Hpy8I GTNNAC 4 cut(s) 63, 345, 403, 543
HpyAV CCTTC 1 cut(s) 305
HpyCH4III ACNGT 1 cut(s) 323
HpyCH4IV ACGT 3 cut(s) 12, 153, 233
HpyCH4V TGCA 2 cut(s) 278, 419
HpyF10VI GCNNNNNNNGC 2 cut(s) 92, 101
HpyF3I CTNAG 2 cut(s) 387, 547
HpySE526I ACGT 3 cut(s) 12, 153, 233
Hsp92II CATG 4 cut(s) 115, 334, 354, 480
Kzo9I GATC 1 cut(s) 269
LmnI GCTCC 1 cut(s) 257
Lsp1109I GCAGC 1 cut(s) 290
LweI GCATC 3 cut(s) 272, 406, 476
MaeII ACGT 3 cut(s) 12, 153, 233
MaeIII GTNAC 2 cut(s) 323, 512
MalI GATC 1 cut(s) 271
MbiI CCGCTC 1 cut(s) 260
MboI GATC 1 cut(s) 269
MboII GAAGA 1 cut(s) 178
MflI RGATCY 1 cut(s) 269
MhlI GDGCHC 1 cut(s) 97
MlsI TGGCCA 1 cut(s) 104
MluCI AATT 2 cut(s) 422, 495
MluI ACGCGT 1 cut(s) 97
MluNI TGGCCA 1 cut(s) 104
MlyI GAGTC 1 cut(s) 482
MnlI CCTC 3 cut(s) 40, 287, 382
Mox20I TGGCCA 1 cut(s) 104
MroXI GAANNNNTTC 1 cut(s) 407
MscI TGGCCA 1 cut(s) 104
MseI TTAA 2 cut(s) 108, 562
MslI CAYNNNNRTG 2 cut(s) 110, 152
Msp20I TGGCCA 1 cut(s) 104
MspA1I CMGCKG 2 cut(s) 83, 281
MspI CCGG 1 cut(s) 393
MspR9I CCNGG 1 cut(s) 44
MvaI CCWGG 1 cut(s) 44
MvnI CGCG 2 cut(s) 99, 471
MwoI GCNNNNNNNGC 2 cut(s) 92, 101
NcoI CCATGG 1 cut(s) 350
NdeII GATC 1 cut(s) 269
NlaIII CATG 4 cut(s) 115, 334, 354, 480
NmuCI GTSAC 1 cut(s) 323
OliI CACNNNNGTG 1 cut(s) 152
PdmI GAANNNNTTC 1 cut(s) 407
PfeI GAWTC 2 cut(s) 35, 160
PflMI CCANNNNNTGG 1 cut(s) 351
PkrI GCNGC 3 cut(s) 85, 262, 280
PleI GAGTC 1 cut(s) 481
PpsI GAGTC 1 cut(s) 481
Ppu21I YACGTR 1 cut(s) 154
Psp6I CCWGG 1 cut(s) 42
PspGI CCWGG 1 cut(s) 42
PspPI GGNCC 2 cut(s) 342, 395
PstNI CAGNNNCTG 1 cut(s) 86
PsuI RGATCY 1 cut(s) 269
PvuII CAGCTG 1 cut(s) 281
RseI CAYNNNNRTG 2 cut(s) 110, 152
SaqAI TTAA 2 cut(s) 108, 562
SatI GCNGC 3 cut(s) 84, 261, 279
Sau3AI GATC 1 cut(s) 269
Sau96I GGNCC 2 cut(s) 342, 395
SchI GAGTC 1 cut(s) 482
ScrFI CCNGG 1 cut(s) 44
SduI GDGCHC 1 cut(s) 97
SetI ASST 6 cut(s) 15, 156, 236, 283, 548, 559
SfaNI GCATC 3 cut(s) 272, 406, 476
SinI GGWCC 2 cut(s) 342, 395
SmiMI CAYNNNNRTG 2 cut(s) 110, 152
Sse9I AATT 2 cut(s) 422, 495
SsiI CCGC 5 cut(s) 83, 145, 260, 452, 469
StyD4I CCNGG 1 cut(s) 42
StyI CCWWGG 1 cut(s) 350
TaaI ACNGT 1 cut(s) 323
TaiI ACGT 3 cut(s) 15, 156, 236
TaqI TCGA 2 cut(s) 38, 292
TaqII GACCGA 1 cut(s) 367
TasI AATT 2 cut(s) 422, 495
TauI GCSGC 2 cut(s) 86, 263
TfiI GAWTC 2 cut(s) 35, 160
Tru1I TTAA 2 cut(s) 108, 562
Tru9I TTAA 2 cut(s) 108, 562
TscAI CASTG 3 cut(s) 179, 405, 418
TseFI GTSAC 1 cut(s) 323
TseI GCWGC 1 cut(s) 278
Tsp45I GTSAC 1 cut(s) 323
TspDTI ATGAA 2 cut(s) 128, 324
TspGWI ACGGA 1 cut(s) 318
TspRI CASTG 3 cut(s) 179, 405, 418
Van91I CCANNNNNTGG 1 cut(s) 351
VpaK11BI GGWCC 2 cut(s) 342, 395
XmiI GTMKAC 1 cut(s) 62
XmnI GAANNNNTTC 1 cut(s) 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.