Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001765

Physical Location & Seq

Genomic Coordinates Reverse (-)

67898431 .. 67901301

Gene Structure 2871 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG461700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGCGAACGTGTTTGGCAACCCCATAACCGACTCGACCCTGAAAGAAATGGCAGAGTATGCCAACAGGGAAATAACCGCAGTTGACAGGGCACGCATGGCAATCAACATGAAAAACGCCGACATGAAGGATATAAACGCCCACACTTACGTGGAGAATCTGAAGAAACAGTGGAGAACTGATCTATCCACACTTTGCCTCATTTACAACGCTACTGGGAACACTATGACGTTGGTTGGTAGTAAAGATTGGGATGGGCACATTGGACAAGTCTCATACCCAATAATAATTCAAAATGGCCAGTGGGGTGCGTTTTTGCATGTCAAAGAATCTAATGGATCTATGGCAGGTGTTGTGTATCGCGGCAAGAACGAAAAGATAGGCAGCGACTGTGACTACATGATGGCTTGGTCCAACACATGGAGAAGTGTATATGAGTACGACACAGTAGAAGACCACTCTGTCCAGACTGAGGCCCGTGAAGTGAACCACTTCACTGATGCAGTATGGAGGTACTTAAATAAAAATTTAAAATATACTTGCTACAACTACCGCGACTCATGGGAGGGGTGCTTGTCAATTATATCAACTGGCAGTGGCACTTCCCCTGTTGTGGAAGCAACATTCACTTTAGAAGATGCCGTCAATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

217

Amino Acids

24.56

Weight (kDa)

5.23

Isoelectric Point (pI)

20.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nakanori	PF21230	31 - 198	1.2e-32	Nakanori-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001765)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g36010
malus_domestica	MD05G1102400.v1.1 MD09G1162600.v1.1 MD09G1162700.v1.1 MD09G1162900.v1.1 MD09G1163100.v1.1 MD17G1147700.v1.1 MD17G1148000.v1.1 MD17G1148100.v1.1 MD17G1148200.v1.1
prunus_persica	Prupe.1G577300_v2.0.a1 Prupe.2G116800_v2.0.a1 Prupe.2G116900_v2.0.a1
pyrus_communis	pycom09g08020 pycom09g08070 pycom17g14020 pycom17g14090 pycom17g14130
rosa_laevigata	RLG00000019195 RLG00000019197 RLG00000020315 RLG00000020317 RLG00000020337
rosa_multiflora	Rmu_sc0001516.1_g000044 Rmu_sc0001516.1_g000051 Rmu_sc0001516.1_g000054 Rmu_sc0004032.1_g000004
rosa_roxburghii	Rroxscaffold_2G00098880 Rroxscaffold_2G00098890 Rroxscaffold_2G00099060 Rroxscaffold_2G00099100 Rroxscaffold_2G00099110 Rroxscaffold_2G00101280
rosa_rugosa	Rorug02G0403500 Rorug02G0403600 Rorug02G0405600 Rorug02G0405700
rosa_samantha	Rh2AG461500 Rh2AG461700 Rh2AG464500 Rh2BG477400 Rh2CG448600 Rh2CG448700 Rh2CG451100 Rh2CG451200 Rh2DG486200 Rh5AG501100
rosa_wichuraiana	Rw2G037860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	338
AasI	GACNNNNNNGTC	1 cut(s)	461
Acc36I	ACCTGC	1 cut(s)	338
AccB7I	CCANNNNNTGG	1 cut(s)	420
AccII	CGCG	2 cut(s)	363, 555
AciI	CCGC	3 cut(s)	78, 363, 553
AclWI	GGATC	1 cut(s)	346
AcoI	YGGCCR	1 cut(s)	298
AcsI	RAATTY	1 cut(s)	526
AcuI	CTGAAG	1 cut(s)	182
AfaI	GTAC	2 cut(s)	440, 515
AfiI	CCNNNNNNNGG	3 cut(s)	420, 472, 613
AflIII	ACRYGT	1 cut(s)	9
AgsI	TTSAA	1 cut(s)	293
AleI	CACNNNNGTG	1 cut(s)	149
Alw26I	GTCTC	1 cut(s)	277
AlwI	GGATC	1 cut(s)	346
AlwNI	CAGNNNCTG	1 cut(s)	390
AoxI	GGCC	2 cut(s)	298, 474
ApeKI	GCWGC	1 cut(s)	384
ApoI	RAATTY	1 cut(s)	526
Asp700I	GAANNNNTTC	1 cut(s)	491
AspS9I	GGNCC	2 cut(s)	411, 475
AvaII	GGWCC	1 cut(s)	411
BaeGI	GKGCMC	2 cut(s)	94, 261
BalI	TGGCCA	1 cut(s)	300
BbsI	GAAGAC	1 cut(s)	459
BbvI	GCAGC	1 cut(s)	396
BccI	CCATC	2 cut(s)	248, 397
BceAI	ACGGC	1 cut(s)	626
BcoDI	GTCTC	1 cut(s)	277
BfuAI	ACCTGC	1 cut(s)	338
BisI	GCNGC	2 cut(s)	364, 385
BlsI	GCNGC	2 cut(s)	365, 386
Bme18I	GGWCC	1 cut(s)	411
BmgT120I	GGNCC	2 cut(s)	411, 475
BmrI	ACTGGG	1 cut(s)	225
BmsI	GCATC	2 cut(s)	490, 628
BmuI	ACTGGG	1 cut(s)	225
BpiI	GAAGAC	1 cut(s)	459
BsaAI	YACGTR	1 cut(s)	151
Bsc4I	CCNNNNNNNGG	3 cut(s)	420, 472, 613
Bse1I	ACTGG	3 cut(s)	220, 301, 595
BseGI	GGATG	1 cut(s)	259
BseLI	CCNNNNNNNGG	3 cut(s)	420, 472, 613
BseMII	CTCAG	1 cut(s)	462
BseNI	ACTGG	3 cut(s)	220, 301, 595
BseSI	GKGCMC	2 cut(s)	94, 261
BseXI	GCAGC	1 cut(s)	396
Bsh1236I	CGCG	2 cut(s)	363, 555
BshFI	GGCC	2 cut(s)	300, 476
BslI	CCNNNNNNNGG	3 cut(s)	420, 472, 613
BsmAI	GTCTC	1 cut(s)	277
BsnI	GGCC	2 cut(s)	300, 476
Bsp1286I	GDGCHC	2 cut(s)	94, 261
Bsp143I	GATC	2 cut(s)	181, 338
BspACI	CCGC	3 cut(s)	78, 363, 553
BspANI	GGCC	2 cut(s)	300, 476
BspCNI	CTCAG	1 cut(s)	463
BspFNI	CGCG	2 cut(s)	363, 555
BspMI	ACCTGC	1 cut(s)	338
BspPI	GGATC	1 cut(s)	346
BsrI	ACTGG	3 cut(s)	220, 301, 595
BssMI	GATC	2 cut(s)	181, 338
Bst4CI	ACNGT	3 cut(s)	171, 392, 448
BstAPI	GCANNNNNTGC	1 cut(s)	59
BstBAI	YACGTR	1 cut(s)	151
BstC8I	GCNNGC	1 cut(s)	94
BstDEI	CTNAG	1 cut(s)	471
BstF5I	GGATG	1 cut(s)	259
BstFNI	CGCG	2 cut(s)	363, 555
BstKTI	GATC	2 cut(s)	184, 341
BstMAI	GTCTC	1 cut(s)	277
BstMBI	GATC	2 cut(s)	181, 338
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 98, 647
BstNSI	RCATGY	1 cut(s)	323
BstSLI	GKGCMC	2 cut(s)	94, 261
BstUI	CGCG	2 cut(s)	363, 555
BstV1I	GCAGC	1 cut(s)	396
BstV2I	GAAGAC	1 cut(s)	459
BstX2I	RGATCY	1 cut(s)	338
BstYI	RGATCY	1 cut(s)	338
BsuRI	GGCC	2 cut(s)	300, 476
BtsCI	GGATG	1 cut(s)	259
BtsI	GCAGTG	1 cut(s)	601
BtsIMutI	CAGTG	4 cut(s)	176, 308, 495, 601
BveI	ACCTGC	1 cut(s)	338
Cac8I	GCNNGC	1 cut(s)	94
CaiI	CAGNNNCTG	1 cut(s)	390
Cfr13I	GGNCC	2 cut(s)	411, 475
Csp6I	GTAC	2 cut(s)	439, 514
CviAII	CATG	7 cut(s)	97, 109, 124, 320, 400, 420, 561
CviJI	RGCY	3 cut(s)	300, 407, 476
CviKI_1	RGCY	3 cut(s)	300, 407, 476
CviQI	GTAC	2 cut(s)	439, 514
DdeI	CTNAG	1 cut(s)	471
DpnI	GATC	2 cut(s)	183, 340
DpnII	GATC	2 cut(s)	181, 338
DraI	TTTAAA	1 cut(s)	531
DrdI	GACNNNNNNGTC	1 cut(s)	461
DseDI	GACNNNNNNGTC	1 cut(s)	461
EaeI	YGGCCR	1 cut(s)	298
Eco47I	GGWCC	1 cut(s)	411
Eco57I	CTGAAG	1 cut(s)	182
FaeI	CATG	7 cut(s)	100, 112, 127, 323, 403, 423, 564
FatI	CATG	7 cut(s)	96, 108, 123, 319, 399, 419, 560
Fnu4HI	GCNGC	2 cut(s)	364, 385
FokI	GGATG	1 cut(s)	266
Fsp4HI	GCNGC	2 cut(s)	364, 385
GluI	GCNGC	2 cut(s)	364, 385
HaeIII	GGCC	2 cut(s)	300, 476
Hin1II	CATG	7 cut(s)	100, 112, 127, 323, 403, 423, 564
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HinfI	GANTC	4 cut(s)	32, 157, 329, 557
Hpy166II	GTNNAC	2 cut(s)	85, 487
Hpy188I	TCNGA	1 cut(s)	162
Hpy188III	TCNNGA	1 cut(s)	466
Hpy8I	GTNNAC	2 cut(s)	85, 487
HpyAV	CCTTC	1 cut(s)	121
HpyCH4III	ACNGT	3 cut(s)	171, 392, 448
HpyCH4IV	ACGT	3 cut(s)	9, 150, 230
HpyCH4V	TGCA	2 cut(s)	319, 503
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 98, 647
HpyF3I	CTNAG	1 cut(s)	471
HpySE526I	ACGT	3 cut(s)	9, 150, 230
Hsp92II	CATG	7 cut(s)	100, 112, 127, 323, 403, 423, 564
Kzo9I	GATC	2 cut(s)	181, 338
LpnPI	CCDG	9 cut(s)	52, 53, 73, 201, 314, 333, 479, 576, 621
Lsp1109I	GCAGC	1 cut(s)	396
LweI	GCATC	2 cut(s)	490, 628
MaeII	ACGT	3 cut(s)	9, 150, 230
MaeIII	GTNAC	1 cut(s)	392
MalI	GATC	2 cut(s)	183, 340
MboI	GATC	2 cut(s)	181, 338
MboII	GAAGA	3 cut(s)	175, 464, 647
MflI	RGATCY	1 cut(s)	338
MhlI	GDGCHC	2 cut(s)	94, 261
MlsI	TGGCCA	1 cut(s)	300
MluCI	AATT	3 cut(s)	288, 526, 579
MluNI	TGGCCA	1 cut(s)	300
MlyI	GAGTC	2 cut(s)	26, 551
MmeI	TCCRAC	1 cut(s)	438
MnlI	CCTC	4 cut(s)	209, 466, 504, 559
Mox20I	TGGCCA	1 cut(s)	300
MroXI	GAANNNNTTC	1 cut(s)	491
MscI	TGGCCA	1 cut(s)	300
MseI	TTAA	2 cut(s)	518, 530
MslI	CAYNNNNRTG	1 cut(s)	149
Msp20I	TGGCCA	1 cut(s)	300
MvnI	CGCG	2 cut(s)	363, 555
MwoI	GCNNNNNNNGC	3 cut(s)	59, 98, 647
NdeII	GATC	2 cut(s)	181, 338
NlaIII	CATG	7 cut(s)	100, 112, 127, 323, 403, 423, 564
NmuCI	GTSAC	1 cut(s)	392
NspI	RCATGY	1 cut(s)	323
OliI	CACNNNNGTG	1 cut(s)	149
PaqCI	CACCTGC	1 cut(s)	338
PdmI	GAANNNNTTC	1 cut(s)	491
PfeI	GAWTC	2 cut(s)	157, 329
PflMI	CCANNNNNTGG	1 cut(s)	420
PkrI	GCNGC	2 cut(s)	365, 386
PleI	GAGTC	2 cut(s)	26, 551
PpsI	GAGTC	2 cut(s)	26, 551
Ppu21I	YACGTR	1 cut(s)	151
PspPI	GGNCC	2 cut(s)	411, 475
PstNI	CAGNNNCTG	1 cut(s)	390
PsuI	RGATCY	1 cut(s)	338
RsaI	GTAC	2 cut(s)	440, 515
RsaNI	GTAC	2 cut(s)	439, 514
RseI	CAYNNNNRTG	1 cut(s)	149
SaqAI	TTAA	2 cut(s)	518, 530
SatI	GCNGC	2 cut(s)	364, 385
Sau3AI	GATC	2 cut(s)	181, 338
Sau96I	GGNCC	2 cut(s)	411, 475
SchI	GAGTC	2 cut(s)	26, 551
SduI	GDGCHC	2 cut(s)	94, 261
SetI	ASST	5 cut(s)	12, 153, 233, 352, 515
SfaNI	GCATC	2 cut(s)	490, 628
SinI	GGWCC	1 cut(s)	411
SmiMI	CAYNNNNRTG	1 cut(s)	149
Sse9I	AATT	3 cut(s)	288, 526, 579
SsiI	CCGC	3 cut(s)	78, 363, 553
TaaI	ACNGT	3 cut(s)	171, 392, 448
TaiI	ACGT	3 cut(s)	12, 153, 233
TaqI	TCGA	1 cut(s)	35
TasI	AATT	3 cut(s)	288, 526, 579
TauI	GCSGC	1 cut(s)	366
TfiI	GAWTC	2 cut(s)	157, 329
Tru1I	TTAA	2 cut(s)	518, 530
Tru9I	TTAA	2 cut(s)	518, 530
TscAI	CASTG	4 cut(s)	176, 308, 502, 601
TseFI	GTSAC	1 cut(s)	392
TseI	GCWGC	1 cut(s)	384
Tsp45I	GTSAC	1 cut(s)	392
TspDTI	ATGAA	2 cut(s)	125, 140
TspRI	CASTG	4 cut(s)	176, 308, 502, 601
Van91I	CCANNNNNTGG	1 cut(s)	420
VpaK11BI	GGWCC	1 cut(s)	411
XapI	RAATTY	1 cut(s)	526
XceI	RCATGY	1 cut(s)	323
XmnI	GAANNNNTTC	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.