Rh2DG486200

23 kDa jasmonate-induced protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0001765
Physical Location & Seq
Forward (+)
70197100 .. 70222760
25661 bp
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UTR
Exon/CDS
Intron
Rh2DG486200.1

Sequence Viewer

Length: 201 bp
ATGGCGAACGTGTTTGGCATCCCCATAATCGACTCAACCCTAGCAGCAATGCCAGAGTATGCCAACAAGCAAATAACCGCTGTTGATAGGGCACGCGTGGCTCTCAACCTGCAAAGCGCTGACATGAAGGCTGCCAACGCACTCACTTACGTGGAGAATTTGAAGAAGCAGTACGGAGGTGAAGGTGATCAGAGGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

66

Amino Acids

7.2

Weight (kDa)

6.08

Isoelectric Point (pI)

40.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 117
AccII CGCG 1 cut(s) 96
AciI CCGC 1 cut(s) 78
AcsI RAATTY 1 cut(s) 157
AfaI GTAC 1 cut(s) 173
AfeI AGCGCT 1 cut(s) 118
AflIII ACRYGT 2 cut(s) 9, 94
AgsI TTSAA 1 cut(s) 163
AleI CACNNNNGTG 1 cut(s) 149
Aor51HI AGCGCT 1 cut(s) 118
ApeKI GCWGC 2 cut(s) 44, 131
ApoI RAATTY 1 cut(s) 157
AspLEI GCGC 1 cut(s) 119
AsuHPI GGTGA 2 cut(s) 191, 197
BaeGI GKGCMC 1 cut(s) 94
BarI GAAGNNNNNNTAC 2 cut(s) 155, 187
BbvI GCAGC 2 cut(s) 56, 118
BclI TGATCA 1 cut(s) 187
BfaI CTAG 1 cut(s) 41
BfoI RGCGCY 1 cut(s) 120
BfuAI ACCTGC 1 cut(s) 117
BisI GCNGC 2 cut(s) 45, 132
BlsI GCNGC 2 cut(s) 46, 133
BmsI GCATC 1 cut(s) 27
BsaAI YACGTR 1 cut(s) 151
Bse3DI GCAATG 1 cut(s) 54
BseGI GGATG 1 cut(s) 18
BseMI GCAATG 1 cut(s) 54
BseSI GKGCMC 1 cut(s) 94
BseXI GCAGC 2 cut(s) 56, 118
Bsh1236I CGCG 1 cut(s) 96
Bsp1286I GDGCHC 1 cut(s) 94
Bsp143I GATC 1 cut(s) 187
BspACI CCGC 1 cut(s) 78
BspFNI CGCG 1 cut(s) 96
BspMI ACCTGC 1 cut(s) 117
BsrDI GCAATG 1 cut(s) 54
BssMI GATC 1 cut(s) 187
BstBAI YACGTR 1 cut(s) 151
BstC8I GCNNGC 1 cut(s) 94
BstF5I GGATG 1 cut(s) 18
BstFNI CGCG 1 cut(s) 96
BstH2I RGCGCY 1 cut(s) 120
BstHHI GCGC 1 cut(s) 119
BstKTI GATC 1 cut(s) 190
BstMBI GATC 1 cut(s) 187
BstMWI GCNNNNNNNGC 2 cut(s) 98, 137
BstSLI GKGCMC 1 cut(s) 94
BstUI CGCG 1 cut(s) 96
BstV1I GCAGC 2 cut(s) 56, 118
BtsCI GGATG 1 cut(s) 18
BveI ACCTGC 1 cut(s) 117
Cac8I GCNNGC 1 cut(s) 94
CfoI GCGC 1 cut(s) 119
Csp6I GTAC 1 cut(s) 172
CviAII CATG 1 cut(s) 124
CviJI RGCY 2 cut(s) 101, 131
CviKI_1 RGCY 2 cut(s) 101, 131
CviQI GTAC 1 cut(s) 172
DpnI GATC 1 cut(s) 189
DpnII GATC 1 cut(s) 187
Eco47III AGCGCT 1 cut(s) 118
FaeI CATG 1 cut(s) 127
FaiI YATR 3 cut(s) 26, 60, 125
FatI CATG 1 cut(s) 123
FbaI TGATCA 1 cut(s) 187
Fnu4HI GCNGC 2 cut(s) 45, 132
FokI GGATG 1 cut(s) 5
Fsp4HI GCNGC 2 cut(s) 45, 132
FspBI CTAG 1 cut(s) 41
GlaI GCGC 1 cut(s) 118
GluI GCNGC 2 cut(s) 45, 132
HaeII RGCGCY 1 cut(s) 120
HhaI GCGC 1 cut(s) 119
Hin1II CATG 1 cut(s) 127
Hin6I GCGC 1 cut(s) 117
HinP1I GCGC 1 cut(s) 117
HinfI GANTC 1 cut(s) 32
HphI GGTGA 2 cut(s) 191, 197
Hpy188I TCNGA 1 cut(s) 192
HpyAV CCTTC 2 cut(s) 121, 176
HpyCH4IV ACGT 2 cut(s) 9, 150
HpyCH4V TGCA 1 cut(s) 112
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 137
HpySE526I ACGT 2 cut(s) 9, 150
Hsp92II CATG 1 cut(s) 127
HspAI GCGC 1 cut(s) 117
Ksp22I TGATCA 1 cut(s) 187
Kzo9I GATC 1 cut(s) 187
LpnPI CCDG 2 cut(s) 66, 122
Lsp1109I GCAGC 2 cut(s) 56, 118
LweI GCATC 1 cut(s) 27
MaeI CTAG 1 cut(s) 41
MaeII ACGT 2 cut(s) 9, 150
MalI GATC 1 cut(s) 189
MboI GATC 1 cut(s) 187
MboII GAAGA 1 cut(s) 175
MhlI GDGCHC 1 cut(s) 94
MluCI AATT 1 cut(s) 157
MluI ACGCGT 1 cut(s) 94
MlyI GAGTC 1 cut(s) 26
MnlI CCTC 2 cut(s) 170, 186
MslI CAYNNNNRTG 1 cut(s) 149
MspA1I CMGCKG 1 cut(s) 80
MvnI CGCG 1 cut(s) 96
MwoI GCNNNNNNNGC 2 cut(s) 98, 137
NdeII GATC 1 cut(s) 187
NlaIII CATG 1 cut(s) 127
OliI CACNNNNGTG 1 cut(s) 149
PkrI GCNGC 2 cut(s) 46, 133
PleI GAGTC 1 cut(s) 26
PpsI GAGTC 1 cut(s) 26
Ppu21I YACGTR 1 cut(s) 151
RsaI GTAC 1 cut(s) 173
RsaNI GTAC 1 cut(s) 172
RseI CAYNNNNRTG 1 cut(s) 149
SatI GCNGC 2 cut(s) 45, 132
Sau3AI GATC 1 cut(s) 187
SchI GAGTC 1 cut(s) 26
SduI GDGCHC 1 cut(s) 94
SetI ASST 6 cut(s) 12, 111, 153, 181, 187, 197
SfaNI GCATC 1 cut(s) 27
SmiMI CAYNNNNRTG 1 cut(s) 149
Sse9I AATT 1 cut(s) 157
SsiI CCGC 1 cut(s) 78
SspMI CTAG 1 cut(s) 41
TaiI ACGT 2 cut(s) 12, 153
TaqI TCGA 1 cut(s) 30
TasI AATT 1 cut(s) 157
TseI GCWGC 2 cut(s) 44, 131
TspDTI ATGAA 1 cut(s) 140
TspGWI ACGGA 1 cut(s) 189
XapI RAATTY 1 cut(s) 157
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.