Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001765

Physical Location & Seq

Genomic Coordinates Forward (+)

20629324 .. 20632292

Gene Structure 2969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00099110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGCGAACGTGTTTGGCAACCCCATAACCGACTCAACCCTGAAAGAAATGGCAGGGTATGCCAACAGGGAAATAACCGCAGTTGACAGGGCACGCATGGCAATCAACATGAAAAACGCCGACATGAAGGATATAAACGCCCACACTTACGTGGAGAATCTGAAGAAACAGTGGAGAACTGAAATATGCACACTTTGCCTCATTTACAATGCTACTGGGAACACTATGACGTTGGTTGGTAGTAAAGATTGGGATGGGCACATTGGACAAGTCTCATACCCAATAGTAATTCAAAATGGCCAGTGGGGTGCGTTTTTGCATGTCAGAGAATCTAATGGATCTATGGCAGGTGTTGTGTATCGCGGCAAGAACGAAAAGATAGGCAGCGACTGTGACTACATGATGGCTTGGTCCAACACATGGAGAAGTGTATATGAGTTGGATAATTCGTTTTGCAGGTCTGGACTGAGGCCCGTGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

160

Amino Acids

18.04

Weight (kDa)

8.34

Isoelectric Point (pI)

25.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nakanori	PF21230	31 - 143	1.1e-30	Nakanori-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001765)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g36010
malus_domestica	MD05G1102400.v1.1 MD09G1162600.v1.1 MD09G1162700.v1.1 MD09G1162900.v1.1 MD09G1163100.v1.1 MD17G1147700.v1.1 MD17G1148000.v1.1 MD17G1148100.v1.1 MD17G1148200.v1.1
prunus_persica	Prupe.1G577300_v2.0.a1 Prupe.2G116800_v2.0.a1 Prupe.2G116900_v2.0.a1
pyrus_communis	pycom09g08020 pycom09g08070 pycom17g14020 pycom17g14090 pycom17g14130
rosa_laevigata	RLG00000019195 RLG00000019197 RLG00000020315 RLG00000020317 RLG00000020337
rosa_multiflora	Rmu_sc0001516.1_g000044 Rmu_sc0001516.1_g000051 Rmu_sc0001516.1_g000054 Rmu_sc0004032.1_g000004
rosa_roxburghii	Rroxscaffold_2G00098880 Rroxscaffold_2G00098890 Rroxscaffold_2G00099060 Rroxscaffold_2G00099100 Rroxscaffold_2G00099110 Rroxscaffold_2G00101280
rosa_rugosa	Rorug02G0403500 Rorug02G0403600 Rorug02G0405600 Rorug02G0405700
rosa_samantha	Rh2AG461500 Rh2AG461700 Rh2AG464500 Rh2BG477400 Rh2CG448600 Rh2CG448700 Rh2CG451100 Rh2CG451200 Rh2DG486200 Rh5AG501100
rosa_wichuraiana	Rw2G037860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	338
Acc36I	ACCTGC	2 cut(s)	338, 447
AccB7I	CCANNNNNTGG	1 cut(s)	420
AccII	CGCG	1 cut(s)	363
AciI	CCGC	2 cut(s)	78, 363
AclWI	GGATC	1 cut(s)	346
AcoI	YGGCCR	1 cut(s)	298
AcuI	CTGAAG	1 cut(s)	182
AfiI	CCNNNNNNNGG	1 cut(s)	420
AflIII	ACRYGT	1 cut(s)	9
AgsI	TTSAA	1 cut(s)	293
AleI	CACNNNNGTG	1 cut(s)	149
Alw26I	GTCTC	1 cut(s)	277
AlwI	GGATC	1 cut(s)	346
AlwNI	CAGNNNCTG	1 cut(s)	390
AoxI	GGCC	2 cut(s)	298, 470
ApeKI	GCWGC	1 cut(s)	384
AspS9I	GGNCC	2 cut(s)	411, 471
AvaII	GGWCC	1 cut(s)	411
BaeGI	GKGCMC	2 cut(s)	94, 261
BalI	TGGCCA	1 cut(s)	300
BbvI	GCAGC	1 cut(s)	396
BccI	CCATC	2 cut(s)	248, 397
BcoDI	GTCTC	1 cut(s)	277
BfuAI	ACCTGC	2 cut(s)	338, 447
BisI	GCNGC	2 cut(s)	364, 385
BlsI	GCNGC	2 cut(s)	365, 386
Bme18I	GGWCC	1 cut(s)	411
BmgT120I	GGNCC	2 cut(s)	411, 471
BmrI	ACTGGG	1 cut(s)	225
BmuI	ACTGGG	1 cut(s)	225
BsaAI	YACGTR	1 cut(s)	151
Bsc4I	CCNNNNNNNGG	1 cut(s)	420
Bse1I	ACTGG	2 cut(s)	220, 301
BseGI	GGATG	1 cut(s)	259
BseLI	CCNNNNNNNGG	1 cut(s)	420
BseMII	CTCAG	1 cut(s)	458
BseNI	ACTGG	2 cut(s)	220, 301
BseSI	GKGCMC	2 cut(s)	94, 261
BseXI	GCAGC	1 cut(s)	396
Bsh1236I	CGCG	1 cut(s)	363
BshFI	GGCC	2 cut(s)	300, 472
BslI	CCNNNNNNNGG	1 cut(s)	420
BsmAI	GTCTC	1 cut(s)	277
BsnI	GGCC	2 cut(s)	300, 472
Bsp1286I	GDGCHC	2 cut(s)	94, 261
Bsp143I	GATC	1 cut(s)	338
BspACI	CCGC	2 cut(s)	78, 363
BspANI	GGCC	2 cut(s)	300, 472
BspCNI	CTCAG	1 cut(s)	459
BspFNI	CGCG	1 cut(s)	363
BspMI	ACCTGC	2 cut(s)	338, 447
BspPI	GGATC	1 cut(s)	346
BsrI	ACTGG	2 cut(s)	220, 301
BssMI	GATC	1 cut(s)	338
Bst4CI	ACNGT	2 cut(s)	171, 392
BstAPI	GCANNNNNTGC	2 cut(s)	59, 195
BstBAI	YACGTR	1 cut(s)	151
BstC8I	GCNNGC	1 cut(s)	94
BstDEI	CTNAG	1 cut(s)	467
BstF5I	GGATG	1 cut(s)	259
BstFNI	CGCG	1 cut(s)	363
BstKTI	GATC	1 cut(s)	341
BstMAI	GTCTC	1 cut(s)	277
BstMBI	GATC	1 cut(s)	338
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 98, 195
BstNSI	RCATGY	1 cut(s)	323
BstSLI	GKGCMC	2 cut(s)	94, 261
BstUI	CGCG	1 cut(s)	363
BstV1I	GCAGC	1 cut(s)	396
BstX2I	RGATCY	1 cut(s)	338
BstYI	RGATCY	1 cut(s)	338
BsuRI	GGCC	2 cut(s)	300, 472
BtsCI	GGATG	1 cut(s)	259
BtsIMutI	CAGTG	2 cut(s)	176, 308
BveI	ACCTGC	2 cut(s)	338, 447
Cac8I	GCNNGC	1 cut(s)	94
CaiI	CAGNNNCTG	1 cut(s)	390
Cfr13I	GGNCC	2 cut(s)	411, 471
CviAII	CATG	6 cut(s)	97, 109, 124, 320, 400, 420
CviJI	RGCY	3 cut(s)	300, 407, 472
CviKI_1	RGCY	3 cut(s)	300, 407, 472
DdeI	CTNAG	1 cut(s)	467
DpnI	GATC	1 cut(s)	340
DpnII	GATC	1 cut(s)	338
EaeI	YGGCCR	1 cut(s)	298
Eco47I	GGWCC	1 cut(s)	411
Eco57I	CTGAAG	1 cut(s)	182
FaeI	CATG	6 cut(s)	100, 112, 127, 323, 403, 423
FatI	CATG	6 cut(s)	96, 108, 123, 319, 399, 419
Fnu4HI	GCNGC	2 cut(s)	364, 385
FokI	GGATG	1 cut(s)	266
Fsp4HI	GCNGC	2 cut(s)	364, 385
GluI	GCNGC	2 cut(s)	364, 385
HaeIII	GGCC	2 cut(s)	300, 472
Hin1II	CATG	6 cut(s)	100, 112, 127, 323, 403, 423
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HinfI	GANTC	3 cut(s)	32, 157, 329
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	2 cut(s)	162, 326
Hpy188III	TCNNGA	1 cut(s)	462
Hpy8I	GTNNAC	1 cut(s)	85
HpyAV	CCTTC	1 cut(s)	121
HpyCH4III	ACNGT	2 cut(s)	171, 392
HpyCH4IV	ACGT	3 cut(s)	9, 150, 230
HpyCH4V	TGCA	3 cut(s)	189, 319, 456
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 98, 195
HpyF3I	CTNAG	1 cut(s)	467
HpySE526I	ACGT	3 cut(s)	9, 150, 230
Hsp92II	CATG	6 cut(s)	100, 112, 127, 323, 403, 423
Kzo9I	GATC	1 cut(s)	338
LpnPI	CCDG	9 cut(s)	39, 52, 53, 73, 201, 314, 333, 442, 447
Lsp1109I	GCAGC	1 cut(s)	396
MaeII	ACGT	3 cut(s)	9, 150, 230
MaeIII	GTNAC	1 cut(s)	392
MalI	GATC	1 cut(s)	340
MboI	GATC	1 cut(s)	338
MboII	GAAGA	1 cut(s)	175
MflI	RGATCY	1 cut(s)	338
MhlI	GDGCHC	2 cut(s)	94, 261
MlsI	TGGCCA	1 cut(s)	300
MluCI	AATT	2 cut(s)	288, 445
MluNI	TGGCCA	1 cut(s)	300
MlyI	GAGTC	1 cut(s)	26
MmeI	TCCRAC	2 cut(s)	420, 438
MnlI	CCTC	2 cut(s)	209, 462
Mox20I	TGGCCA	1 cut(s)	300
MscI	TGGCCA	1 cut(s)	300
MslI	CAYNNNNRTG	1 cut(s)	149
Msp20I	TGGCCA	1 cut(s)	300
MvnI	CGCG	1 cut(s)	363
MwoI	GCNNNNNNNGC	3 cut(s)	59, 98, 195
NdeII	GATC	1 cut(s)	338
NlaIII	CATG	6 cut(s)	100, 112, 127, 323, 403, 423
NmuCI	GTSAC	1 cut(s)	392
NspI	RCATGY	1 cut(s)	323
OliI	CACNNNNGTG	1 cut(s)	149
PaqCI	CACCTGC	1 cut(s)	338
PfeI	GAWTC	2 cut(s)	157, 329
PflMI	CCANNNNNTGG	1 cut(s)	420
PkrI	GCNGC	2 cut(s)	365, 386
PleI	GAGTC	1 cut(s)	26
PpsI	GAGTC	1 cut(s)	26
Ppu21I	YACGTR	1 cut(s)	151
PspPI	GGNCC	2 cut(s)	411, 471
PstNI	CAGNNNCTG	1 cut(s)	390
PsuI	RGATCY	1 cut(s)	338
RseI	CAYNNNNRTG	1 cut(s)	149
SatI	GCNGC	2 cut(s)	364, 385
Sau3AI	GATC	1 cut(s)	338
Sau96I	GGNCC	2 cut(s)	411, 471
SchI	GAGTC	1 cut(s)	26
SduI	GDGCHC	2 cut(s)	94, 261
SetI	ASST	5 cut(s)	12, 153, 233, 352, 461
SinI	GGWCC	1 cut(s)	411
SmiMI	CAYNNNNRTG	1 cut(s)	149
Sse9I	AATT	2 cut(s)	288, 445
SsiI	CCGC	2 cut(s)	78, 363
TaaI	ACNGT	2 cut(s)	171, 392
TaiI	ACGT	3 cut(s)	12, 153, 233
TasI	AATT	2 cut(s)	288, 445
TauI	GCSGC	1 cut(s)	366
TfiI	GAWTC	2 cut(s)	157, 329
TscAI	CASTG	2 cut(s)	176, 308
TseFI	GTSAC	1 cut(s)	392
TseI	GCWGC	1 cut(s)	384
Tsp45I	GTSAC	1 cut(s)	392
TspDTI	ATGAA	2 cut(s)	125, 140
TspRI	CASTG	2 cut(s)	176, 308
Van91I	CCANNNNNTGG	1 cut(s)	420
VpaK11BI	GGWCC	1 cut(s)	411
XceI	RCATGY	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.