Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0001765

Physical Location & Seq

Genomic Coordinates Reverse (-)

17488839 .. 17490128

Gene Structure 1290 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G116900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGAAAAACGCCGGGGACAAGGACCTCAATGCCGTTACATTTGTGGAGAATTTGAAGCAGCAGCATGGTGATGGAATCTCCACACGCTGCCTTATTTACAATGCGACTGGGGAGACCTTAACCTATGCTATAACAAGGACTGGTGTGGACAAATTGGACCCTCCCCCTACCCTGCACTCATTGCAAACGGGCAGTGGGGTGCCTTTCTGCAACGTCCAAAAACTTGGAAAGCCTGAAGGATCTGTTGCCACTGTTGTGTACAAGGGCACGAACAAGGACGGTCAGGTCCATGGCCGGCTGCTGGCGTGGAGCAACAATAGGGTTGCCTATAAAAACACGGTAGATTATTTTCGGTTCAGATCATATTCGTTGAGTAATTATAGATCGATGTTGCCATGGAGCAACAATGGGATTGCTGTGTTTACTGAGAGCCGAACTGCTACACACTATTTGGATAATGTGGATTGGATCCCCCTAATCTATAATTACGTGAATAAATCTGGGATCTACAAAAGTGAGACATGGGGTGGATGCTTCTCAACTATCTCAACTGGCAGTGGCACTTCCCCAGTAGTTGAAGCAATATTCATGTTGGAAGATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

202

Amino Acids

22.19

Weight (kDa)

8.36

Isoelectric Point (pI)

23.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001765)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g36010
malus_domestica	MD05G1102400.v1.1 MD09G1162600.v1.1 MD09G1162700.v1.1 MD09G1162900.v1.1 MD09G1163100.v1.1 MD17G1147700.v1.1 MD17G1148000.v1.1 MD17G1148100.v1.1 MD17G1148200.v1.1
prunus_persica	Prupe.1G577300_v2.0.a1 Prupe.2G116800_v2.0.a1 Prupe.2G116900_v2.0.a1
pyrus_communis	pycom09g08020 pycom09g08070 pycom17g14020 pycom17g14090 pycom17g14130
rosa_laevigata	RLG00000019195 RLG00000019197 RLG00000020315 RLG00000020317 RLG00000020337
rosa_multiflora	Rmu_sc0001516.1_g000044 Rmu_sc0001516.1_g000051 Rmu_sc0001516.1_g000054 Rmu_sc0004032.1_g000004
rosa_roxburghii	Rroxscaffold_2G00098880 Rroxscaffold_2G00098890 Rroxscaffold_2G00099060 Rroxscaffold_2G00099100 Rroxscaffold_2G00099110 Rroxscaffold_2G00101280
rosa_rugosa	Rorug02G0403500 Rorug02G0403600 Rorug02G0405600 Rorug02G0405700
rosa_samantha	Rh2AG461500 Rh2AG461700 Rh2AG464500 Rh2BG477400 Rh2CG448600 Rh2CG448700 Rh2CG451100 Rh2CG451200 Rh2DG486200 Rh5AG501100
rosa_wichuraiana	Rw2G037860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	284
AccB1I	GGYRCC	1 cut(s)	199
AclWI	GGATC	4 cut(s)	247, 463, 476, 512
AcoI	YGGCCR	1 cut(s)	292
AcsI	RAATTY	1 cut(s)	49
AcuI	CTGAAG	1 cut(s)	255
AfaI	GTAC	1 cut(s)	260
AfiI	CCNNNNNNNGG	1 cut(s)	301
AgsI	TTSAA	2 cut(s)	55, 578
AleI	CACNNNNGTG	1 cut(s)	254
Alw26I	GTCTC	2 cut(s)	107, 512
AlwI	GGATC	4 cut(s)	247, 463, 476, 512
AoxI	GGCC	1 cut(s)	292
ApeKI	GCWGC	4 cut(s)	58, 61, 87, 298
ApoI	RAATTY	1 cut(s)	49
AspS9I	GGNCC	3 cut(s)	22, 157, 286
AsuC2I	CCSGG	1 cut(s)	13
AsuHPI	GGTGA	1 cut(s)	80
AvaII	GGWCC	3 cut(s)	22, 157, 286
BaeGI	GKGCMC	1 cut(s)	269
BamHI	GGATCC	1 cut(s)	468
BanI	GGYRCC	1 cut(s)	199
BbvI	GCAGC	4 cut(s)	70, 73, 74, 285
BccI	CCATC	1 cut(s)	65
BceAI	ACGGC	1 cut(s)	17
BcnI	CCSGG	1 cut(s)	13
BcoDI	GTCTC	2 cut(s)	107, 512
BisI	GCNGC	4 cut(s)	59, 62, 88, 299
BlsI	GCNGC	4 cut(s)	60, 63, 89, 300
Bme1390I	CCNGG	1 cut(s)	13
Bme18I	GGWCC	3 cut(s)	22, 157, 286
BmgT120I	GGNCC	3 cut(s)	22, 157, 286
BmiI	GGNNCC	3 cut(s)	159, 201, 470
BmrFI	CCNGG	1 cut(s)	13
BmrI	ACTGGG	2 cut(s)	117, 563
BmsI	GCATC	2 cut(s)	521, 589
BmuI	ACTGGG	2 cut(s)	117, 563
BpuMI	CCSGG	1 cut(s)	13
Bsa29I	ATCGAT	1 cut(s)	386
BsaAI	YACGTR	1 cut(s)	490
BsaI	GGTCTC	1 cut(s)	107
BsaJI	CCNNGG	3 cut(s)	12, 289, 395
Bsc4I	CCNNNNNNNGG	1 cut(s)	301
Bse118I	RCCGGY	1 cut(s)	294
Bse1I	ACTGG	4 cut(s)	112, 145, 556, 569
Bse3DI	GCAATG	1 cut(s)	179
BseCI	ATCGAT	1 cut(s)	386
BseDI	CCNNGG	3 cut(s)	12, 289, 395
BseGI	GGATG	1 cut(s)	536
BseLI	CCNNNNNNNGG	1 cut(s)	301
BseMI	GCAATG	1 cut(s)	179
BseMII	CTCAG	1 cut(s)	417
BseNI	ACTGG	4 cut(s)	112, 145, 556, 569
BseSI	GKGCMC	1 cut(s)	269
BseXI	GCAGC	4 cut(s)	70, 73, 74, 285
BsgI	GTGCAG	1 cut(s)	158
BshFI	GGCC	1 cut(s)	294
BshNI	GGYRCC	1 cut(s)	199
BshVI	ATCGAT	1 cut(s)	386
BsiSI	CCGG	2 cut(s)	12, 295
BslFI	GGGAC	1 cut(s)	29
BslI	CCNNNNNNNGG	1 cut(s)	301
BsmAI	GTCTC	2 cut(s)	107, 512
BsmFI	GGGAC	1 cut(s)	29
BsnI	GGCC	1 cut(s)	294
Bso31I	GGTCTC	1 cut(s)	107
Bsp1286I	GDGCHC	1 cut(s)	269
Bsp1407I	TGTACA	1 cut(s)	258
Bsp143I	GATC	5 cut(s)	239, 359, 383, 468, 504
Bsp19I	CCATGG	2 cut(s)	289, 395
BspANI	GGCC	1 cut(s)	294
BspCNI	CTCAG	1 cut(s)	418
BspDI	ATCGAT	1 cut(s)	386
BspLI	GGNNCC	3 cut(s)	159, 201, 470
BspPI	GGATC	4 cut(s)	247, 463, 476, 512
BspT107I	GGYRCC	1 cut(s)	199
BspTNI	GGTCTC	1 cut(s)	107
BsrDI	GCAATG	1 cut(s)	179
BsrFI	RCCGGY	1 cut(s)	294
BsrGI	TGTACA	1 cut(s)	258
BsrI	ACTGG	4 cut(s)	112, 145, 556, 569
BssAI	RCCGGY	1 cut(s)	294
BssECI	CCNNGG	3 cut(s)	12, 289, 395
BssMI	GATC	5 cut(s)	239, 359, 383, 468, 504
BssT1I	CCWWGG	2 cut(s)	289, 395
Bst4CI	ACNGT	3 cut(s)	253, 281, 340
BstAPI	GCANNNNNTGC	1 cut(s)	181
BstAUI	TGTACA	1 cut(s)	258
BstBAI	YACGTR	1 cut(s)	490
BstC8I	GCNNGC	2 cut(s)	296, 303
BstDEI	CTNAG	1 cut(s)	426
BstDSI	CCRYGG	2 cut(s)	289, 395
BstF5I	GGATG	1 cut(s)	536
BstKTI	GATC	5 cut(s)	242, 362, 386, 471, 507
BstMAI	GTCTC	2 cut(s)	107, 512
BstMBI	GATC	5 cut(s)	239, 359, 383, 468, 504
BstMWI	GCNNNNNNNGC	1 cut(s)	181
BstSCI	CCNGG	1 cut(s)	11
BstSLI	GKGCMC	1 cut(s)	269
BstV1I	GCAGC	4 cut(s)	70, 73, 74, 285
BstX2I	RGATCY	3 cut(s)	239, 468, 504
BstXI	CCANNNNNNTGG	1 cut(s)	224
BstYI	RGATCY	3 cut(s)	239, 468, 504
Bsu15I	ATCGAT	1 cut(s)	386
BsuRI	GGCC	1 cut(s)	294
BsuTUI	ATCGAT	1 cut(s)	386
BtgI	CCRYGG	2 cut(s)	289, 395
BtsCI	GGATG	1 cut(s)	536
BtsI	GCAGTG	2 cut(s)	199, 562
BtsIMutI	CAGTG	3 cut(s)	199, 249, 562
Cac8I	GCNNGC	2 cut(s)	296, 303
Cfr10I	RCCGGY	1 cut(s)	294
Cfr13I	GGNCC	3 cut(s)	22, 157, 286
ClaI	ATCGAT	1 cut(s)	386
Csp6I	GTAC	1 cut(s)	259
CviAII	CATG	5 cut(s)	65, 290, 396, 522, 589
CviJI	RGCY	4 cut(s)	232, 294, 298, 432
CviKI_1	RGCY	4 cut(s)	232, 294, 298, 432
CviQI	GTAC	1 cut(s)	259
DdeI	CTNAG	1 cut(s)	426
DpnI	GATC	5 cut(s)	241, 361, 385, 470, 506
DpnII	GATC	5 cut(s)	239, 359, 383, 468, 504
DrdI	GACNNNNNNGTC	1 cut(s)	284
DseDI	GACNNNNNNGTC	1 cut(s)	284
EaeI	YGGCCR	1 cut(s)	292
Eco130I	CCWWGG	2 cut(s)	289, 395
Eco31I	GGTCTC	1 cut(s)	107
Eco47I	GGWCC	3 cut(s)	22, 157, 286
Eco57I	CTGAAG	1 cut(s)	255
EcoO109I	RGGNCCY	1 cut(s)	22
EcoT14I	CCWWGG	2 cut(s)	289, 395
ErhI	CCWWGG	2 cut(s)	289, 395
FaeI	CATG	5 cut(s)	68, 293, 399, 525, 592
FaqI	GGGAC	1 cut(s)	29
FatI	CATG	5 cut(s)	64, 289, 395, 521, 588
Fnu4HI	GCNGC	4 cut(s)	59, 62, 88, 299
FokI	GGATG	1 cut(s)	543
Fsp4HI	GCNGC	4 cut(s)	59, 62, 88, 299
GluI	GCNGC	4 cut(s)	59, 62, 88, 299
HaeIII	GGCC	1 cut(s)	294
HapII	CCGG	2 cut(s)	12, 295
Hin1II	CATG	5 cut(s)	68, 293, 399, 525, 592
HinfI	GANTC	1 cut(s)	75
HpaII	CCGG	2 cut(s)	12, 295
HphI	GGTGA	1 cut(s)	80
Hpy166II	GTNNAC	3 cut(s)	148, 259, 423
Hpy188I	TCNGA	1 cut(s)	359
Hpy8I	GTNNAC	3 cut(s)	148, 259, 423
HpyAV	CCTTC	1 cut(s)	230
HpyCH4III	ACNGT	3 cut(s)	253, 281, 340
HpyCH4IV	ACGT	2 cut(s)	213, 489
HpyCH4V	TGCA	3 cut(s)	175, 184, 210
HpyF10VI	GCNNNNNNNGC	1 cut(s)	181
HpyF3I	CTNAG	1 cut(s)	426
HpySE526I	ACGT	2 cut(s)	213, 489
Hsp92II	CATG	5 cut(s)	68, 293, 399, 525, 592
KroI	GCCGGC	1 cut(s)	294
KroNI	GCCGGC	1 cut(s)	296
Kzo9I	GATC	5 cut(s)	239, 359, 383, 468, 504
LmnI	GCTCC	2 cut(s)	309, 399
Lsp1109I	GCAGC	4 cut(s)	70, 73, 74, 285
LweI	GCATC	2 cut(s)	521, 589
MaeII	ACGT	2 cut(s)	213, 489
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	5 cut(s)	241, 361, 385, 470, 506
MboI	GATC	5 cut(s)	239, 359, 383, 468, 504
MflI	RGATCY	3 cut(s)	239, 468, 504
MhlI	GDGCHC	1 cut(s)	269
MluCI	AATT	4 cut(s)	49, 152, 376, 484
MmeI	TCCRAC	1 cut(s)	573
MnlI	CCTC	2 cut(s)	35, 171
MroNI	GCCGGC	1 cut(s)	294
MseI	TTAA	1 cut(s)	119
MslI	CAYNNNNRTG	2 cut(s)	69, 254
MspI	CCGG	2 cut(s)	12, 295
MspR9I	CCNGG	1 cut(s)	13
MwoI	GCNNNNNNNGC	1 cut(s)	181
NaeI	GCCGGC	1 cut(s)	296
NciI	CCSGG	1 cut(s)	13
NcoI	CCATGG	2 cut(s)	289, 395
NdeII	GATC	5 cut(s)	239, 359, 383, 468, 504
NgoMIV	GCCGGC	1 cut(s)	294
NlaIII	CATG	5 cut(s)	68, 293, 399, 525, 592
NlaIV	GGNNCC	3 cut(s)	159, 201, 470
OliI	CACNNNNGTG	1 cut(s)	254
PdiI	GCCGGC	1 cut(s)	296
PfeI	GAWTC	1 cut(s)	75
PkrI	GCNGC	4 cut(s)	60, 63, 89, 300
Ppu21I	YACGTR	1 cut(s)	490
PpuMI	RGGWCCY	1 cut(s)	22
Psp5II	RGGWCCY	1 cut(s)	22
PspN4I	GGNNCC	3 cut(s)	159, 201, 470
PspPI	GGNCC	3 cut(s)	22, 157, 286
PspPPI	RGGWCCY	1 cut(s)	22
PsuI	RGATCY	3 cut(s)	239, 468, 504
RsaI	GTAC	1 cut(s)	260
RsaNI	GTAC	1 cut(s)	259
RseI	CAYNNNNRTG	2 cut(s)	69, 254
SaqAI	TTAA	1 cut(s)	119
SatI	GCNGC	4 cut(s)	59, 62, 88, 299
Sau3AI	GATC	5 cut(s)	239, 359, 383, 468, 504
Sau96I	GGNCC	3 cut(s)	22, 157, 286
ScrFI	CCNGG	1 cut(s)	13
SduI	GDGCHC	1 cut(s)	269
SetI	ASST	6 cut(s)	27, 119, 125, 216, 288, 492
SfaNI	GCATC	2 cut(s)	521, 589
SinI	GGWCC	3 cut(s)	22, 157, 286
SmiMI	CAYNNNNRTG	2 cut(s)	69, 254
Sse9I	AATT	4 cut(s)	49, 152, 376, 484
SspI	AATATT	1 cut(s)	585
StyD4I	CCNGG	1 cut(s)	11
StyI	CCWWGG	2 cut(s)	289, 395
TaaI	ACNGT	3 cut(s)	253, 281, 340
TaiI	ACGT	2 cut(s)	216, 492
TaqI	TCGA	1 cut(s)	386
TasI	AATT	4 cut(s)	49, 152, 376, 484
TatI	WGTACW	1 cut(s)	258
TfiI	GAWTC	1 cut(s)	75
Tru1I	TTAA	1 cut(s)	119
Tru9I	TTAA	1 cut(s)	119
TscAI	CASTG	3 cut(s)	199, 256, 562
TseI	GCWGC	4 cut(s)	58, 61, 87, 298
TspDTI	ATGAA	2 cut(s)	17, 577
TspRI	CASTG	3 cut(s)	199, 256, 562
VpaK11BI	GGWCC	3 cut(s)	22, 157, 286
XapI	RAATTY	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.