Rroxscaffold_2G00098890

23 kDa jasmonate-induced protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001765
Physical Location & Seq
Reverse (-)
20363554 .. 20381070
17517 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00098890.1

Sequence Viewer

Length: 639 bp
ATGGCGAACGTGTTTGGCATCCCCATAATCGACTCAACCCTAGCAGCAATGCCAGAGTATGCCAACAAGCAAATAACCGCAGTTGATAGGGCACGCGTGGCTCTCCACCTGCAAAGCGCCGACATGAAGGCTGCCAACGCACTCACTTACGTGGAGAATTTGAAGAAGCAGTACGGAGGTGAAGTACCCGCCACACTTTGCCTCCTTTACAATGCTACTGGGAACACTTTAACATTTGTTACTGTTAAAGATGAGTACGGGCACATTGGACCAGCCCCATATCCATTGCGAATTCAAAATGGCCAGTGGGGTGCATTTCTGCACGTGAAAACCGCTGACGCTCCAACCGGATCTTATGCCGGTGTTGTGTATCGCGGCAAGAACCCCAATGGCATTGACTGGGACTGCATGATGGCATGGCGTAACCCCTTTGTGAACACCAACAACTCGGTATGGTCTGAGATCCGCGAACCGAACCACTTCGACGGAACGTGGAGCGTAATAGCCAATCAATTGTTACAGCTTCGCTACAACTACAGTGACACGTGGCAGGGAGGCTTGTCAACTATAGCAACTGGCAGGGATACTTCCCCTATTGTGGAAGCAGTGTTCACTTTAGAAGATGCCGCATTAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

212

Amino Acids

23.27

Weight (kDa)

5.5

Isoelectric Point (pI)

28.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nakanori PF21230 31 - 190 1.4e-33 Nakanori-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 117
Acc36I ACCTGC 1 cut(s) 117
AccII CGCG 3 cut(s) 96, 375, 468
AciI CCGC 6 cut(s) 78, 189, 333, 375, 466, 627
AclWI GGATC 2 cut(s) 358, 457
AcoI YGGCCR 1 cut(s) 301
AcsI RAATTY 2 cut(s) 157, 291
AcvI CACGTG 2 cut(s) 325, 546
AfaI GTAC 3 cut(s) 173, 186, 257
AfiI CCNNNNNNNGG 1 cut(s) 598
AflIII ACRYGT 3 cut(s) 9, 94, 543
AgsI TTSAA 2 cut(s) 163, 296
AleI CACNNNNGTG 1 cut(s) 149
AloI GAACNNNNNNTCC 2 cut(s) 593, 625
AluBI AGCT 1 cut(s) 523
AluI AGCT 1 cut(s) 523
AlwI GGATC 2 cut(s) 358, 457
AoxI GGCC 1 cut(s) 301
ApeKI GCWGC 2 cut(s) 44, 131
ApoI RAATTY 2 cut(s) 157, 291
Asp700I GAANNNNTTC 1 cut(s) 479
AspLEI GCGC 1 cut(s) 119
AspS9I GGNCC 1 cut(s) 269
AsuHPI GGTGA 1 cut(s) 191
AvaII GGWCC 1 cut(s) 269
BaeGI GKGCMC 2 cut(s) 94, 264
BalI TGGCCA 1 cut(s) 303
BarI GAAGNNNNNNTAC 2 cut(s) 155, 187
BbrPI CACGTG 2 cut(s) 325, 546
BbvI GCAGC 2 cut(s) 56, 118
BccI CCATC 1 cut(s) 406
BciVI GTATCC 1 cut(s) 577
BfaI CTAG 1 cut(s) 41
BfmI CTRYAG 2 cut(s) 535, 567
BfoI RGCGCY 1 cut(s) 120
BfuAI ACCTGC 1 cut(s) 117
BfuI GTATCC 1 cut(s) 577
BisI GCNGC 4 cut(s) 45, 132, 376, 627
BlsI GCNGC 4 cut(s) 46, 133, 377, 628
Bme18I GGWCC 1 cut(s) 269
BmgT120I GGNCC 1 cut(s) 269
BmrI ACTGGG 2 cut(s) 228, 409
BmsI GCATC 2 cut(s) 27, 613
BmuI ACTGGG 2 cut(s) 228, 409
BsaAI YACGTR 3 cut(s) 151, 325, 546
BsaWI WCCGGW 1 cut(s) 347
BsaXI ACNNNNNCTCC 4 cut(s) 168, 186, 198, 216
Bsc4I CCNNNNNNNGG 1 cut(s) 598
Bse118I RCCGGY 1 cut(s) 359
Bse1I ACTGG 4 cut(s) 223, 304, 404, 580
Bse3DI GCAATG 2 cut(s) 54, 284
BseGI GGATG 1 cut(s) 18
BseLI CCNNNNNNNGG 1 cut(s) 598
BseMI GCAATG 2 cut(s) 54, 284
BseMII CTCAG 1 cut(s) 450
BseNI ACTGG 4 cut(s) 223, 304, 404, 580
BseSI GKGCMC 2 cut(s) 94, 264
BseXI GCAGC 2 cut(s) 56, 118
BsgI GTGCAG 1 cut(s) 305
Bsh1236I CGCG 3 cut(s) 96, 375, 468
BshFI GGCC 1 cut(s) 303
BsiSI CCGG 2 cut(s) 348, 360
BslFI GGGAC 1 cut(s) 416
BslI CCNNNNNNNGG 1 cut(s) 598
BsmFI GGGAC 1 cut(s) 416
BsnI GGCC 1 cut(s) 303
Bsp1286I GDGCHC 2 cut(s) 94, 264
Bsp143I GATC 2 cut(s) 350, 462
BspACI CCGC 6 cut(s) 78, 189, 333, 375, 466, 627
BspANI GGCC 1 cut(s) 303
BspCNI CTCAG 1 cut(s) 451
BspFNI CGCG 3 cut(s) 96, 375, 468
BspMI ACCTGC 1 cut(s) 117
BspPI GGATC 2 cut(s) 358, 457
BsrDI GCAATG 2 cut(s) 54, 284
BsrFI RCCGGY 1 cut(s) 359
BsrI ACTGG 4 cut(s) 223, 304, 404, 580
BssAI RCCGGY 1 cut(s) 359
BssMI GATC 2 cut(s) 350, 462
Bst4CI ACNGT 2 cut(s) 244, 539
BstBAI YACGTR 3 cut(s) 151, 325, 546
BstC8I GCNNGC 1 cut(s) 94
BstDEI CTNAG 1 cut(s) 459
BstF5I GGATG 1 cut(s) 18
BstFNI CGCG 3 cut(s) 96, 375, 468
BstH2I RGCGCY 1 cut(s) 120
BstHHI GCGC 1 cut(s) 119
BstKTI GATC 2 cut(s) 353, 465
BstMBI GATC 2 cut(s) 350, 462
BstMWI GCNNNNNNNGC 3 cut(s) 98, 137, 632
BstSFI CTRYAG 2 cut(s) 535, 567
BstSLI GKGCMC 2 cut(s) 94, 264
BstUI CGCG 3 cut(s) 96, 375, 468
BstV1I GCAGC 2 cut(s) 56, 118
BstX2I RGATCY 2 cut(s) 350, 462
BstYI RGATCY 2 cut(s) 350, 462
BsuI GTATCC 1 cut(s) 577
BsuRI GGCC 1 cut(s) 303
BtsCI GGATG 1 cut(s) 18
BtsI GCAGTG 1 cut(s) 612
BtsIMutI CAGTG 3 cut(s) 311, 544, 612
BveI ACCTGC 1 cut(s) 117
Cac8I GCNNGC 1 cut(s) 94
CfoI GCGC 1 cut(s) 119
Cfr10I RCCGGY 1 cut(s) 359
Cfr13I GGNCC 1 cut(s) 269
CseI GACGC 1 cut(s) 347
Csp6I GTAC 3 cut(s) 172, 185, 256
CviAII CATG 3 cut(s) 124, 409, 417
CviJI RGCY 8 cut(s) 101, 131, 275, 303, 506, 523, 558, 635
CviKI_1 RGCY 8 cut(s) 101, 131, 275, 303, 506, 523, 558, 635
CviQI GTAC 3 cut(s) 172, 185, 256
DdeI CTNAG 1 cut(s) 459
DpnI GATC 2 cut(s) 352, 464
DpnII GATC 2 cut(s) 350, 462
EaeI YGGCCR 1 cut(s) 301
Eco47I GGWCC 1 cut(s) 269
Eco72I CACGTG 2 cut(s) 325, 546
EcoRI GAATTC 1 cut(s) 291
FaeI CATG 3 cut(s) 127, 412, 420
FaiI YATR 9 cut(s) 26, 60, 125, 280, 357, 410, 418, 454, 569
FaqI GGGAC 1 cut(s) 416
FatI CATG 3 cut(s) 123, 408, 416
FauI CCCGC 1 cut(s) 196
Fnu4HI GCNGC 4 cut(s) 45, 132, 376, 627
FokI GGATG 1 cut(s) 5
Fsp4HI GCNGC 4 cut(s) 45, 132, 376, 627
FspBI CTAG 1 cut(s) 41
GlaI GCGC 1 cut(s) 118
GluI GCNGC 4 cut(s) 45, 132, 376, 627
HaeII RGCGCY 1 cut(s) 120
HaeIII GGCC 1 cut(s) 303
HapII CCGG 2 cut(s) 348, 360
HgaI GACGC 1 cut(s) 347
HhaI GCGC 1 cut(s) 119
Hin1II CATG 3 cut(s) 127, 412, 420
Hin6I GCGC 1 cut(s) 117
HinP1I GCGC 1 cut(s) 117
HincII GTYRAC 1 cut(s) 564
HindII GTYRAC 1 cut(s) 564
HinfI GANTC 1 cut(s) 32
HpaII CCGG 2 cut(s) 348, 360
HphI GGTGA 1 cut(s) 191
Hpy166II GTNNAC 3 cut(s) 436, 564, 612
Hpy188I TCNGA 1 cut(s) 460
Hpy8I GTNNAC 3 cut(s) 436, 564, 612
Hpy99I CGWCG 1 cut(s) 488
HpyAV CCTTC 1 cut(s) 121
HpyCH4III ACNGT 2 cut(s) 244, 539
HpyCH4IV ACGT 5 cut(s) 9, 150, 324, 491, 545
HpyCH4V TGCA 4 cut(s) 112, 314, 322, 408
HpyF10VI GCNNNNNNNGC 3 cut(s) 98, 137, 632
HpyF3I CTNAG 1 cut(s) 459
HpySE526I ACGT 5 cut(s) 9, 150, 324, 491, 545
Hsp92II CATG 3 cut(s) 127, 412, 420
HspAI GCGC 1 cut(s) 117
Kzo9I GATC 2 cut(s) 350, 462
LmnI GCTCC 2 cut(s) 346, 495
Lsp1109I GCAGC 2 cut(s) 56, 118
LweI GCATC 2 cut(s) 27, 613
MaeI CTAG 1 cut(s) 41
MaeII ACGT 5 cut(s) 9, 150, 324, 491, 545
MaeIII GTNAC 4 cut(s) 238, 422, 516, 539
MalI GATC 2 cut(s) 352, 464
MboI GATC 2 cut(s) 350, 462
MboII GAAGA 2 cut(s) 175, 632
MfeI CAATTG 1 cut(s) 512
MflI RGATCY 2 cut(s) 350, 462
MhlI GDGCHC 2 cut(s) 94, 264
MlsI TGGCCA 1 cut(s) 303
MluCI AATT 3 cut(s) 157, 291, 512
MluI ACGCGT 1 cut(s) 94
MluNI TGGCCA 1 cut(s) 303
MlyI GAGTC 1 cut(s) 26
MmeI TCCRAC 1 cut(s) 368
MnlI CCTC 3 cut(s) 170, 212, 548
Mox20I TGGCCA 1 cut(s) 303
MroXI GAANNNNTTC 1 cut(s) 479
MscI TGGCCA 1 cut(s) 303
MseI TTAA 2 cut(s) 230, 246
MslI CAYNNNNRTG 1 cut(s) 149
Msp20I TGGCCA 1 cut(s) 303
MspA1I CMGCKG 1 cut(s) 335
MspI CCGG 2 cut(s) 348, 360
MunI CAATTG 1 cut(s) 512
MvnI CGCG 3 cut(s) 96, 375, 468
MwoI GCNNNNNNNGC 3 cut(s) 98, 137, 632
NdeII GATC 2 cut(s) 350, 462
NlaIII CATG 3 cut(s) 127, 412, 420
NmuCI GTSAC 1 cut(s) 539
OliI CACNNNNGTG 1 cut(s) 149
PaqCI CACCTGC 1 cut(s) 117
PdmI GAANNNNTTC 1 cut(s) 479
PkrI GCNGC 4 cut(s) 46, 133, 377, 628
PleI GAGTC 1 cut(s) 26
PmaCI CACGTG 2 cut(s) 325, 546
PmlI CACGTG 2 cut(s) 325, 546
PpsI GAGTC 1 cut(s) 26
Ppu21I YACGTR 3 cut(s) 151, 325, 546
PspCI CACGTG 2 cut(s) 325, 546
PspPI GGNCC 1 cut(s) 269
PsuI RGATCY 2 cut(s) 350, 462
RsaI GTAC 3 cut(s) 173, 186, 257
RsaNI GTAC 3 cut(s) 172, 185, 256
RseI CAYNNNNRTG 1 cut(s) 149
SaqAI TTAA 2 cut(s) 230, 246
SatI GCNGC 4 cut(s) 45, 132, 376, 627
Sau3AI GATC 2 cut(s) 350, 462
Sau96I GGNCC 1 cut(s) 269
SchI GAGTC 1 cut(s) 26
SduI GDGCHC 2 cut(s) 94, 264
SetI ASST 8 cut(s) 12, 111, 153, 181, 327, 494, 525, 548
SfaNI GCATC 2 cut(s) 27, 613
SfcI CTRYAG 2 cut(s) 535, 567
SinI GGWCC 1 cut(s) 269
SmiMI CAYNNNNRTG 1 cut(s) 149
Sse9I AATT 3 cut(s) 157, 291, 512
SsiI CCGC 6 cut(s) 78, 189, 333, 375, 466, 627
SspMI CTAG 1 cut(s) 41
TaaI ACNGT 2 cut(s) 244, 539
TaiI ACGT 5 cut(s) 12, 153, 327, 494, 548
TaqI TCGA 2 cut(s) 30, 483
TasI AATT 3 cut(s) 157, 291, 512
TauI GCSGC 2 cut(s) 378, 629
Tru1I TTAA 2 cut(s) 230, 246
Tru9I TTAA 2 cut(s) 230, 246
TscAI CASTG 3 cut(s) 311, 544, 612
TseFI GTSAC 1 cut(s) 539
TseI GCWGC 2 cut(s) 44, 131
Tsp45I GTSAC 1 cut(s) 539
TspDTI ATGAA 1 cut(s) 140
TspGWI ACGGA 2 cut(s) 189, 501
TspRI CASTG 3 cut(s) 311, 544, 612
VpaK11BI GGWCC 1 cut(s) 269
XapI RAATTY 2 cut(s) 157, 291
XmnI GAANNNNTTC 1 cut(s) 479
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.