Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0001765

Physical Location & Seq

Genomic Coordinates Reverse (-)

13218642 .. 13219654

Gene Structure 1013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1162700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGCGTATAACGTTTTTGGCAACCCCATAACGGATGAAACTTTGAAGGGGATGCCAGAGTATGCCGACAAGCAAATAGGAAGATTAGACAGGGCATACGTGGCATTGAATATGAAAAATGCCGCGGAGAAGGACTTCAACGCTCGAACACATGTGGAGAAACTGAAGGAGCAGTATGGCGACGGAGTCTCCACACTCTGCCTTGTTTACAATGCAACTGGGGAGACCATAAGATATGCTTATAAGAAAGATTGGTATGGGCACATCGGGAACGCACCATACCCACCACTGATTGCAAATGGTCAGTGGGGTGCGTTTCTGCACGTCAAAACTGCCGGAGAGTCTTCTGGATCCAATGCTGCTGTTGTGTACCGAGGCCTAAATATTGTTAACGAGGAATGCGACTGGATGTTGTCTTGGAGCAACCCATGGGACAGGACTAAATCGGACAACACGGTCATTACAGAAATTCGAGGCCTTAATCACTTTGAATCTTATTGGAGCTTAATCTATGGTTACTTGGAGAAAGGTCAAGCGTACAGCAAGGACAGATGGAATGGATGCGTGTCAATCATGTCAACTGGCAGTGACACTTCCCCAATTGTTGAAGCAATACTCACTCTAGAAAATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

212

Amino Acids

23.7

Weight (kDa)

5.41

Isoelectric Point (pI)

26.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nakanori	PF21230	33 - 195	2.9e-45	Nakanori-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001765)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g36010
malus_domestica	MD05G1102400.v1.1 MD09G1162600.v1.1 MD09G1162700.v1.1 MD09G1162900.v1.1 MD09G1163100.v1.1 MD17G1147700.v1.1 MD17G1148000.v1.1 MD17G1148100.v1.1 MD17G1148200.v1.1
prunus_persica	Prupe.1G577300_v2.0.a1 Prupe.2G116800_v2.0.a1 Prupe.2G116900_v2.0.a1
pyrus_communis	pycom09g08020 pycom09g08070 pycom17g14020 pycom17g14090 pycom17g14130
rosa_laevigata	RLG00000019195 RLG00000019197 RLG00000020315 RLG00000020317 RLG00000020337
rosa_multiflora	Rmu_sc0001516.1_g000044 Rmu_sc0001516.1_g000051 Rmu_sc0001516.1_g000054 Rmu_sc0004032.1_g000004
rosa_roxburghii	Rroxscaffold_2G00098880 Rroxscaffold_2G00098890 Rroxscaffold_2G00099060 Rroxscaffold_2G00099100 Rroxscaffold_2G00099110 Rroxscaffold_2G00101280
rosa_rugosa	Rorug02G0403500 Rorug02G0403600 Rorug02G0405600 Rorug02G0405700
rosa_samantha	Rh2AG461500 Rh2AG461700 Rh2AG464500 Rh2BG477400 Rh2CG448600 Rh2CG448700 Rh2CG451100 Rh2CG451200 Rh2DG486200 Rh5AG501100
rosa_wichuraiana	Rw2G037860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	243
AasI	GACNNNNNNGTC	1 cut(s)	455
AccII	CGCG	1 cut(s)	125
AciI	CCGC	2 cut(s)	123, 125
AclI	AACGTT	1 cut(s)	12
AclWI	GGATC	2 cut(s)	345, 358
AcsI	RAATTY	1 cut(s)	468
AcuI	CTGAAG	1 cut(s)	185
AfaI	GTAC	2 cut(s)	371, 539
AfiI	CCNNNNNNNGG	1 cut(s)	31
AflIII	ACRYGT	1 cut(s)	151
AgsI	TTSAA	5 cut(s)	46, 109, 139, 491, 608
AjiI	CACGTC	1 cut(s)	325
AluBI	AGCT	1 cut(s)	504
AluI	AGCT	1 cut(s)	504
Alw26I	GTCTC	2 cut(s)	193, 218
AlwI	GGATC	2 cut(s)	345, 358
AoxI	GGCC	2 cut(s)	376, 475
ApeKI	GCWGC	1 cut(s)	359
ApoI	RAATTY	1 cut(s)	468
Asp700I	GAANNNNTTC	1 cut(s)	134
BaeGI	GKGCMC	1 cut(s)	264
BamHI	GGATCC	1 cut(s)	350
BbsI	GAAGAC	1 cut(s)	336
BbvI	GCAGC	1 cut(s)	346
BccI	CCATC	1 cut(s)	546
BcoDI	GTCTC	2 cut(s)	193, 218
BfaI	CTAG	1 cut(s)	623
BisI	GCNGC	2 cut(s)	123, 360
BlsI	GCNGC	2 cut(s)	124, 361
BmgBI	CACGTC	1 cut(s)	325
BmiI	GGNNCC	1 cut(s)	352
BmrI	ACTGGG	1 cut(s)	228
BmsI	GCATC	2 cut(s)	42, 551
BmuI	ACTGGG	1 cut(s)	228
BpiI	GAAGAC	1 cut(s)	336
BsaAI	YACGTR	1 cut(s)	100
BsaI	GGTCTC	1 cut(s)	218
BsaJI	CCNNGG	3 cut(s)	123, 373, 428
BsaXI	ACNNNNNCTCC	2 cut(s)	173, 203
Bsc4I	CCNNNNNNNGG	1 cut(s)	31
Bse1I	ACTGG	3 cut(s)	223, 410, 586
BseDI	CCNNGG	3 cut(s)	123, 373, 428
BseGI	GGATG	4 cut(s)	40, 57, 414, 566
BseLI	CCNNNNNNNGG	1 cut(s)	31
BseNI	ACTGG	3 cut(s)	223, 410, 586
BseSI	GKGCMC	1 cut(s)	264
BseXI	GCAGC	1 cut(s)	346
BsgI	GTGCAG	1 cut(s)	305
Bsh1236I	CGCG	1 cut(s)	125
BshFI	GGCC	2 cut(s)	378, 477
BsiSI	CCGG	1 cut(s)	336
BslFI	GGGAC	1 cut(s)	446
BslI	CCNNNNNNNGG	1 cut(s)	31
BsmAI	GTCTC	2 cut(s)	193, 218
BsmFI	GGGAC	1 cut(s)	446
BsmI	GAATGC	1 cut(s)	404
BsnI	GGCC	2 cut(s)	378, 477
Bso31I	GGTCTC	1 cut(s)	218
Bsp1286I	GDGCHC	1 cut(s)	264
Bsp143I	GATC	1 cut(s)	350
Bsp19I	CCATGG	1 cut(s)	428
BspACI	CCGC	2 cut(s)	123, 125
BspANI	GGCC	2 cut(s)	378, 477
BspFNI	CGCG	1 cut(s)	125
BspLI	GGNNCC	1 cut(s)	352
BspPI	GGATC	2 cut(s)	345, 358
BspTNI	GGTCTC	1 cut(s)	218
BsrI	ACTGG	3 cut(s)	223, 410, 586
BssECI	CCNNGG	3 cut(s)	123, 373, 428
BssMI	GATC	1 cut(s)	350
BssT1I	CCWWGG	1 cut(s)	428
Bst4CI	ACNGT	1 cut(s)	457
BstBAI	YACGTR	1 cut(s)	100
BstDSI	CCRYGG	2 cut(s)	123, 428
BstF5I	GGATG	4 cut(s)	40, 57, 414, 566
BstFNI	CGCG	1 cut(s)	125
BstKTI	GATC	1 cut(s)	353
BstMAI	GTCTC	2 cut(s)	193, 218
BstMBI	GATC	1 cut(s)	350
BstMWI	GCNNNNNNNGC	1 cut(s)	101
BstNSI	RCATGY	1 cut(s)	155
BstSLI	GKGCMC	1 cut(s)	264
BstUI	CGCG	1 cut(s)	125
BstV1I	GCAGC	1 cut(s)	346
BstV2I	GAAGAC	1 cut(s)	336
BstX2I	RGATCY	1 cut(s)	350
BstYI	RGATCY	1 cut(s)	350
BsuRI	GGCC	2 cut(s)	378, 477
BtgI	CCRYGG	2 cut(s)	123, 428
BtrI	CACGTC	1 cut(s)	325
BtsCI	GGATG	4 cut(s)	40, 57, 414, 566
BtsI	GCAGTG	1 cut(s)	592
BtsIMutI	CAGTG	3 cut(s)	287, 311, 592
Cfr42I	CCGCGG	1 cut(s)	126
Csp6I	GTAC	2 cut(s)	370, 538
CviAII	CATG	3 cut(s)	152, 429, 574
CviJI	RGCY	3 cut(s)	378, 477, 504
CviKI_1	RGCY	3 cut(s)	378, 477, 504
CviQI	GTAC	2 cut(s)	370, 538
DpnI	GATC	1 cut(s)	352
DpnII	GATC	1 cut(s)	350
DrdI	GACNNNNNNGTC	1 cut(s)	455
DseDI	GACNNNNNNGTC	1 cut(s)	455
Eco130I	CCWWGG	1 cut(s)	428
Eco147I	AGGCCT	2 cut(s)	378, 477
Eco31I	GGTCTC	1 cut(s)	218
Eco57I	CTGAAG	1 cut(s)	185
EcoT14I	CCWWGG	1 cut(s)	428
ErhI	CCWWGG	1 cut(s)	428
FaeI	CATG	3 cut(s)	155, 432, 577
FalI	AAGNNNNNCTT	2 cut(s)	223, 255
FaqI	GGGAC	1 cut(s)	446
FatI	CATG	3 cut(s)	151, 428, 573
Fnu4HI	GCNGC	2 cut(s)	123, 360
FokI	GGATG	4 cut(s)	47, 64, 421, 573
Fsp4HI	GCNGC	2 cut(s)	123, 360
FspBI	CTAG	1 cut(s)	623
GluI	GCNGC	2 cut(s)	123, 360
HaeIII	GGCC	2 cut(s)	378, 477
HapII	CCGG	1 cut(s)	336
Hin1II	CATG	3 cut(s)	155, 432, 577
HincII	GTYRAC	2 cut(s)	391, 579
HindII	GTYRAC	2 cut(s)	391, 579
HinfI	GANTC	3 cut(s)	186, 341, 491
HpaI	GTTAAC	1 cut(s)	391
HpaII	CCGG	1 cut(s)	336
Hpy166II	GTNNAC	4 cut(s)	208, 370, 391, 579
Hpy188I	TCNGA	1 cut(s)	448
Hpy188III	TCNNGA	3 cut(s)	268, 348, 623
Hpy8I	GTNNAC	4 cut(s)	208, 370, 391, 579
Hpy99I	CGWCG	1 cut(s)	185
HpyAV	CCTTC	3 cut(s)	40, 124, 160
HpyCH4III	ACNGT	1 cut(s)	457
HpyCH4IV	ACGT	3 cut(s)	12, 99, 324
HpyCH4V	TGCA	3 cut(s)	215, 296, 322
HpyF10VI	GCNNNNNNNGC	1 cut(s)	101
HpySE526I	ACGT	3 cut(s)	12, 99, 324
Hsp92II	CATG	3 cut(s)	155, 432, 577
KspAI	GTTAAC	1 cut(s)	391
KspI	CCGCGG	1 cut(s)	126
Kzo9I	GATC	1 cut(s)	350
LmnI	GCTCC	3 cut(s)	169, 420, 501
LpnPI	CCDG	8 cut(s)	69, 76, 204, 333, 349, 391, 421, 567
Lsp1109I	GCAGC	1 cut(s)	346
LweI	GCATC	2 cut(s)	42, 551
MaeI	CTAG	1 cut(s)	623
MaeII	ACGT	3 cut(s)	12, 99, 324
MaeIII	GTNAC	2 cut(s)	515, 587
MalI	GATC	1 cut(s)	352
MboI	GATC	1 cut(s)	350
MboII	GAAGA	2 cut(s)	93, 336
MfeI	CAATTG	1 cut(s)	600
MflI	RGATCY	1 cut(s)	350
MhlI	GDGCHC	1 cut(s)	264
MluCI	AATT	2 cut(s)	468, 600
MlyI	GAGTC	2 cut(s)	195, 350
MnlI	CCTC	3 cut(s)	368, 388, 467
MroXI	GAANNNNTTC	1 cut(s)	134
MseI	TTAA	4 cut(s)	390, 480, 506, 634
MspA1I	CMGCKG	1 cut(s)	125
MspI	CCGG	1 cut(s)	336
MunI	CAATTG	1 cut(s)	600
Mva1269I	GAATGC	1 cut(s)	404
MvnI	CGCG	1 cut(s)	125
MwoI	GCNNNNNNNGC	1 cut(s)	101
NcoI	CCATGG	1 cut(s)	428
NdeII	GATC	1 cut(s)	350
NlaIII	CATG	3 cut(s)	155, 432, 577
NlaIV	GGNNCC	1 cut(s)	352
NmuCI	GTSAC	1 cut(s)	587
NspI	RCATGY	1 cut(s)	155
PceI	AGGCCT	2 cut(s)	378, 477
PciI	ACATGT	1 cut(s)	151
PcsI	WCGNNNNNNNCGW	1 cut(s)	399
PctI	GAATGC	1 cut(s)	404
PdmI	GAANNNNTTC	1 cut(s)	134
PfeI	GAWTC	1 cut(s)	491
PflFI	GACNNNGTC	1 cut(s)	185
PkrI	GCNGC	2 cut(s)	124, 361
PleI	GAGTC	2 cut(s)	194, 349
PpsI	GAGTC	2 cut(s)	194, 349
Ppu21I	YACGTR	1 cut(s)	100
PscI	ACATGT	1 cut(s)	151
PsiI	TTATAA	1 cut(s)	243
Psp1406I	AACGTT	1 cut(s)	12
PspN4I	GGNNCC	1 cut(s)	352
PsrI	GAACNNNNNNTAC	2 cut(s)	263, 295
PsuI	RGATCY	1 cut(s)	350
PsyI	GACNNNGTC	1 cut(s)	185
RsaI	GTAC	2 cut(s)	371, 539
RsaNI	GTAC	2 cut(s)	370, 538
SacII	CCGCGG	1 cut(s)	126
SaqAI	TTAA	4 cut(s)	390, 480, 506, 634
SatI	GCNGC	2 cut(s)	123, 360
Sau3AI	GATC	1 cut(s)	350
SchI	GAGTC	2 cut(s)	195, 350
SduI	GDGCHC	1 cut(s)	264
SetI	ASST	5 cut(s)	15, 102, 327, 506, 532
SfaNI	GCATC	2 cut(s)	42, 551
Sfr303I	CCGCGG	1 cut(s)	126
SgrBI	CCGCGG	1 cut(s)	126
Sse9I	AATT	2 cut(s)	468, 600
SseBI	AGGCCT	2 cut(s)	378, 477
SsiI	CCGC	2 cut(s)	123, 125
SspI	AATATT	1 cut(s)	385
SspMI	CTAG	1 cut(s)	623
StuI	AGGCCT	2 cut(s)	378, 477
StyI	CCWWGG	1 cut(s)	428
TaaI	ACNGT	1 cut(s)	457
TaiI	ACGT	3 cut(s)	15, 102, 327
TaqI	TCGA	2 cut(s)	145, 472
TasI	AATT	2 cut(s)	468, 600
TauI	GCSGC	1 cut(s)	125
TfiI	GAWTC	1 cut(s)	491
Tru1I	TTAA	4 cut(s)	390, 480, 506, 634
Tru9I	TTAA	4 cut(s)	390, 480, 506, 634
TscAI	CASTG	3 cut(s)	294, 311, 592
TseFI	GTSAC	1 cut(s)	587
TseI	GCWGC	1 cut(s)	359
Tsp45I	GTSAC	1 cut(s)	587
TspDTI	ATGAA	2 cut(s)	51, 128
TspGWI	ACGGA	2 cut(s)	47, 198
TspRI	CASTG	3 cut(s)	294, 311, 592
Tth111I	GACNNNGTC	1 cut(s)	185
XapI	RAATTY	1 cut(s)	468
XbaI	TCTAGA	1 cut(s)	622
XceI	RCATGY	1 cut(s)	155
XmnI	GAANNNNTTC	1 cut(s)	134
XspI	CTAG	1 cut(s)	623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.