Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0001765

Physical Location & Seq

Genomic Coordinates Reverse (-)

17486482 .. 17487687

Gene Structure 1206 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G116800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGCGTATAATGTGTTCGGCAACCCCATCCAAAACTCAACGTTGAAGGGGATGCCGGAGTACAAGTTAAAGGCAATAGAAAGAAATGACAGGGCAAAAGTGGCTCTGCAAATGAAAAACGTCGGGGACAAGGACCTCAAGGCCCTTACGTTTGTGGAGAATTTGAAGAAGCAGCATGGTGATGGAATTTCTACACTTTGCCTTATTTACAATGCGACTGGGGACACCTTAACCTATTCTATAAGTAAGGACTGGTGTGGGCACATTGGACACTTCCCCTACCCTACACTCATTGCAAATGGGCAGTGGGGTGCCTTTCTACATGTCCAAAAACTTGGAACGCCTGAAGGATCTGTCGCCACTGTTGTGTACAACGGCAAGAACAAGGACGGAGAAGACCGCGGCCGGCTGCTGGCATGGAGCAACAATAGGGTTGCCTACAAAAACAAGGTGTTTACTGAGAGCCGAACTGCTGAACACTATTTGGATAATGTGGGTTGGATCCCCCTAATCTATGATTATGTGGATAAATCTGGCACCTACAAAAGTGAGAAATGGGGTGGATGCTTCTCAACTATCTCAACTGGCTATGGCACTTCCCCAATAGTTGAAGCAATATTCATGTTGGACGATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

213

Amino Acids

23.6

Weight (kDa)

8.29

Isoelectric Point (pI)

20.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001765)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g36010
malus_domestica	MD05G1102400.v1.1 MD09G1162600.v1.1 MD09G1162700.v1.1 MD09G1162900.v1.1 MD09G1163100.v1.1 MD17G1147700.v1.1 MD17G1148000.v1.1 MD17G1148100.v1.1 MD17G1148200.v1.1
prunus_persica	Prupe.1G577300_v2.0.a1 Prupe.2G116800_v2.0.a1 Prupe.2G116900_v2.0.a1
pyrus_communis	pycom09g08020 pycom09g08070 pycom17g14020 pycom17g14090 pycom17g14130
rosa_laevigata	RLG00000019195 RLG00000019197 RLG00000020315 RLG00000020317 RLG00000020337
rosa_multiflora	Rmu_sc0001516.1_g000044 Rmu_sc0001516.1_g000051 Rmu_sc0001516.1_g000054 Rmu_sc0004032.1_g000004
rosa_roxburghii	Rroxscaffold_2G00098880 Rroxscaffold_2G00098890 Rroxscaffold_2G00099060 Rroxscaffold_2G00099100 Rroxscaffold_2G00099110 Rroxscaffold_2G00101280
rosa_rugosa	Rorug02G0403500 Rorug02G0403600 Rorug02G0405600 Rorug02G0405700
rosa_samantha	Rh2AG461500 Rh2AG461700 Rh2AG464500 Rh2BG477400 Rh2CG448600 Rh2CG448700 Rh2CG451100 Rh2CG451200 Rh2DG486200 Rh5AG501100
rosa_wichuraiana	Rw2G037860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	311, 536
AccII	CGCG	1 cut(s)	402
AciI	CCGC	2 cut(s)	400, 402
AclI	AACGTT	1 cut(s)	41
AclWI	GGATC	3 cut(s)	358, 496, 509
AcoI	YGGCCR	1 cut(s)	403
AcsI	RAATTY	2 cut(s)	160, 186
AcuI	CTGAAG	1 cut(s)	366
AfaI	GTAC	2 cut(s)	62, 371
AfiI	CCNNNNNNNGG	1 cut(s)	412
AflIII	ACRYGT	1 cut(s)	322
AgsI	TTSAA	3 cut(s)	46, 166, 611
AleI	CACNNNNGTG	1 cut(s)	365
AlwI	GGATC	3 cut(s)	358, 496, 509
AoxI	GGCC	2 cut(s)	141, 403
ApeKI	GCWGC	2 cut(s)	172, 409
ApoI	RAATTY	2 cut(s)	160, 186
AspS9I	GGNCC	2 cut(s)	133, 142
AsuHPI	GGTGA	1 cut(s)	191
AvaII	GGWCC	1 cut(s)	133
BaeGI	GKGCMC	1 cut(s)	264
BamHI	GGATCC	1 cut(s)	501
BanI	GGYRCC	2 cut(s)	311, 536
BbsI	GAAGAC	1 cut(s)	402
BbvI	GCAGC	2 cut(s)	184, 396
BccI	CCATC	2 cut(s)	35, 176
BceAI	ACGGC	1 cut(s)	391
BisI	GCNGC	3 cut(s)	173, 403, 410
BlsI	GCNGC	3 cut(s)	174, 404, 411
Bme18I	GGWCC	1 cut(s)	133
BmgT120I	GGNCC	2 cut(s)	133, 142
BmiI	GGNNCC	3 cut(s)	313, 503, 538
BmrI	ACTGGG	1 cut(s)	228
BmsI	GCATC	3 cut(s)	42, 554, 622
BmuI	ACTGGG	1 cut(s)	228
BpiI	GAAGAC	1 cut(s)	402
BpuEI	CTTGAG	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	400
BsaXI	ACNNNNNCTCC	2 cut(s)	50, 80
Bsc4I	CCNNNNNNNGG	1 cut(s)	412
Bse118I	RCCGGY	1 cut(s)	405
Bse1I	ACTGG	3 cut(s)	223, 257, 589
Bse3DI	GCAATG	1 cut(s)	291
BseDI	CCNNGG	1 cut(s)	400
BseGI	GGATG	3 cut(s)	27, 57, 569
BseLI	CCNNNNNNNGG	1 cut(s)	412
BseMI	GCAATG	1 cut(s)	291
BseMII	CTCAG	1 cut(s)	450
BseNI	ACTGG	3 cut(s)	223, 257, 589
BseSI	GKGCMC	1 cut(s)	264
BseX3I	CGGCCG	1 cut(s)	403
BseXI	GCAGC	2 cut(s)	184, 396
Bsh1236I	CGCG	1 cut(s)	402
Bsh1285I	CGRYCG	1 cut(s)	406
BshFI	GGCC	2 cut(s)	143, 405
BshNI	GGYRCC	2 cut(s)	311, 536
BsiEI	CGRYCG	1 cut(s)	406
BsiSI	CCGG	2 cut(s)	56, 406
BslFI	GGGAC	2 cut(s)	140, 236
BslI	CCNNNNNNNGG	1 cut(s)	412
BsmFI	GGGAC	2 cut(s)	140, 236
BsnI	GGCC	2 cut(s)	143, 405
Bsp1286I	GDGCHC	1 cut(s)	264
Bsp1407I	TGTACA	1 cut(s)	369
Bsp143I	GATC	2 cut(s)	350, 501
BspACI	CCGC	2 cut(s)	400, 402
BspANI	GGCC	2 cut(s)	143, 405
BspCNI	CTCAG	1 cut(s)	451
BspFNI	CGCG	1 cut(s)	402
BspLI	GGNNCC	3 cut(s)	313, 503, 538
BspPI	GGATC	3 cut(s)	358, 496, 509
BspT107I	GGYRCC	2 cut(s)	311, 536
BsrDI	GCAATG	1 cut(s)	291
BsrFI	RCCGGY	1 cut(s)	405
BsrGI	TGTACA	1 cut(s)	369
BsrI	ACTGG	3 cut(s)	223, 257, 589
BssAI	RCCGGY	1 cut(s)	405
BssECI	CCNNGG	1 cut(s)	400
BssMI	GATC	2 cut(s)	350, 501
Bst4CI	ACNGT	1 cut(s)	364
BstAUI	TGTACA	1 cut(s)	369
BstC8I	GCNNGC	2 cut(s)	407, 414
BstDEI	CTNAG	1 cut(s)	459
BstDSI	CCRYGG	1 cut(s)	400
BstF5I	GGATG	3 cut(s)	27, 57, 569
BstFNI	CGCG	1 cut(s)	402
BstKTI	GATC	2 cut(s)	353, 504
BstMBI	GATC	2 cut(s)	350, 501
BstMCI	CGRYCG	1 cut(s)	406
BstMWI	GCNNNNNNNGC	1 cut(s)	101
BstNSI	RCATGY	1 cut(s)	326
BstSLI	GKGCMC	1 cut(s)	264
BstUI	CGCG	1 cut(s)	402
BstV1I	GCAGC	2 cut(s)	184, 396
BstV2I	GAAGAC	1 cut(s)	402
BstX2I	RGATCY	2 cut(s)	350, 501
BstXI	CCANNNNNNTGG	1 cut(s)	335
BstYI	RGATCY	2 cut(s)	350, 501
BstZI	CGGCCG	1 cut(s)	403
BsuRI	GGCC	2 cut(s)	143, 405
BtgI	CCRYGG	1 cut(s)	400
BtsCI	GGATG	3 cut(s)	27, 57, 569
BtsI	GCAGTG	1 cut(s)	311
BtsIMutI	CAGTG	2 cut(s)	311, 360
Cac8I	GCNNGC	2 cut(s)	407, 414
Cfr10I	RCCGGY	1 cut(s)	405
Cfr13I	GGNCC	2 cut(s)	133, 142
Cfr42I	CCGCGG	1 cut(s)	403
Csp6I	GTAC	2 cut(s)	61, 370
CviAII	CATG	4 cut(s)	176, 323, 417, 622
CviJI	RGCY	6 cut(s)	104, 143, 405, 409, 465, 588
CviKI_1	RGCY	6 cut(s)	104, 143, 405, 409, 465, 588
CviQI	GTAC	2 cut(s)	61, 370
DdeI	CTNAG	1 cut(s)	459
DpnI	GATC	2 cut(s)	352, 503
DpnII	GATC	2 cut(s)	350, 501
EaeI	YGGCCR	1 cut(s)	403
EagI	CGGCCG	1 cut(s)	403
EclXI	CGGCCG	1 cut(s)	403
Eco47I	GGWCC	1 cut(s)	133
Eco52I	CGGCCG	1 cut(s)	403
Eco57I	CTGAAG	1 cut(s)	366
EcoO109I	RGGNCCY	2 cut(s)	133, 142
FaeI	CATG	4 cut(s)	179, 326, 420, 625
FaiI	YATR	9 cut(s)	9, 177, 242, 324, 418, 516, 522, 591, 623
FaqI	GGGAC	2 cut(s)	140, 236
FatI	CATG	4 cut(s)	175, 322, 416, 621
Fnu4HI	GCNGC	3 cut(s)	173, 403, 410
FokI	GGATG	3 cut(s)	14, 64, 576
Fsp4HI	GCNGC	3 cut(s)	173, 403, 410
GluI	GCNGC	3 cut(s)	173, 403, 410
HaeIII	GGCC	2 cut(s)	143, 405
HapII	CCGG	2 cut(s)	56, 406
Hin1II	CATG	4 cut(s)	179, 326, 420, 625
HpaII	CCGG	2 cut(s)	56, 406
HphI	GGTGA	1 cut(s)	191
Hpy166II	GTNNAC	2 cut(s)	370, 456
Hpy8I	GTNNAC	2 cut(s)	370, 456
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	2 cut(s)	40, 341
HpyCH4III	ACNGT	1 cut(s)	364
HpyCH4IV	ACGT	3 cut(s)	41, 120, 149
HpyCH4V	TGCA	2 cut(s)	109, 296
HpyF10VI	GCNNNNNNNGC	1 cut(s)	101
HpyF3I	CTNAG	1 cut(s)	459
HpySE526I	ACGT	3 cut(s)	41, 120, 149
Hsp92II	CATG	4 cut(s)	179, 326, 420, 625
KroI	GCCGGC	1 cut(s)	405
KroNI	GCCGGC	1 cut(s)	407
KspI	CCGCGG	1 cut(s)	403
Kzo9I	GATC	2 cut(s)	350, 501
LmnI	GCTCC	1 cut(s)	420
LpnPI	CCDG	9 cut(s)	69, 76, 204, 238, 357, 398, 419, 519, 570
Lsp1109I	GCAGC	2 cut(s)	184, 396
LweI	GCATC	3 cut(s)	42, 554, 622
MaeII	ACGT	3 cut(s)	41, 120, 149
MalI	GATC	2 cut(s)	352, 503
MboI	GATC	2 cut(s)	350, 501
MboII	GAAGA	2 cut(s)	178, 407
MflI	RGATCY	2 cut(s)	350, 501
MhlI	GDGCHC	1 cut(s)	264
MluCI	AATT	2 cut(s)	160, 186
MmeI	TCCRAC	2 cut(s)	479, 606
MnlI	CCTC	1 cut(s)	146
MroNI	GCCGGC	1 cut(s)	405
MseI	TTAA	2 cut(s)	68, 230
MslI	CAYNNNNRTG	2 cut(s)	180, 365
MspA1I	CMGCKG	1 cut(s)	402
MspI	CCGG	2 cut(s)	56, 406
MvnI	CGCG	1 cut(s)	402
MwoI	GCNNNNNNNGC	1 cut(s)	101
NaeI	GCCGGC	1 cut(s)	407
NdeII	GATC	2 cut(s)	350, 501
NgoMIV	GCCGGC	1 cut(s)	405
NlaIII	CATG	4 cut(s)	179, 326, 420, 625
NlaIV	GGNNCC	3 cut(s)	313, 503, 538
NspI	RCATGY	1 cut(s)	326
OliI	CACNNNNGTG	1 cut(s)	365
PciI	ACATGT	1 cut(s)	322
PdiI	GCCGGC	1 cut(s)	407
PkrI	GCNGC	3 cut(s)	174, 404, 411
PpuMI	RGGWCCY	1 cut(s)	133
PscI	ACATGT	1 cut(s)	322
Psp1406I	AACGTT	1 cut(s)	41
Psp5II	RGGWCCY	1 cut(s)	133
PspN4I	GGNNCC	3 cut(s)	313, 503, 538
PspPI	GGNCC	2 cut(s)	133, 142
PspPPI	RGGWCCY	1 cut(s)	133
PsrI	GAACNNNNNNTAC	1 cut(s)	31
PsuI	RGATCY	2 cut(s)	350, 501
RsaI	GTAC	2 cut(s)	62, 371
RsaNI	GTAC	2 cut(s)	61, 370
RseI	CAYNNNNRTG	2 cut(s)	180, 365
SacII	CCGCGG	1 cut(s)	403
SaqAI	TTAA	2 cut(s)	68, 230
SatI	GCNGC	3 cut(s)	173, 403, 410
Sau3AI	GATC	2 cut(s)	350, 501
Sau96I	GGNCC	2 cut(s)	133, 142
SduI	GDGCHC	1 cut(s)	264
SetI	ASST	8 cut(s)	44, 123, 138, 152, 230, 236, 453, 542
SfaNI	GCATC	3 cut(s)	42, 554, 622
Sfr303I	CCGCGG	1 cut(s)	403
SgrBI	CCGCGG	1 cut(s)	403
SinI	GGWCC	1 cut(s)	133
SmiMI	CAYNNNNRTG	2 cut(s)	180, 365
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	2 cut(s)	160, 186
SsiI	CCGC	2 cut(s)	400, 402
SspI	AATATT	1 cut(s)	618
TaaI	ACNGT	1 cut(s)	364
TaiI	ACGT	3 cut(s)	44, 123, 152
TasI	AATT	2 cut(s)	160, 186
TatI	WGTACW	2 cut(s)	60, 369
TauI	GCSGC	1 cut(s)	405
Tru1I	TTAA	2 cut(s)	68, 230
Tru9I	TTAA	2 cut(s)	68, 230
TscAI	CASTG	2 cut(s)	311, 367
TseI	GCWGC	2 cut(s)	172, 409
TspDTI	ATGAA	2 cut(s)	128, 610
TspGWI	ACGGA	1 cut(s)	405
TspRI	CASTG	2 cut(s)	311, 367
VpaK11BI	GGWCC	1 cut(s)	133
XapI	RAATTY	2 cut(s)	160, 186
XceI	RCATGY	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.