RLG00000020317

23 kDa jasmonate-induced protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001765
Physical Location & Seq
Reverse (-)
63649919 .. 63650673
755 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020317

Sequence Viewer

Length: 654 bp
ATGGCGAACGTGTTTGGCAACCCCATAACCGACTCGACCCTGAAAGGAATGGCAGAGTATGCTGGCGGGCAAATAACCGCAGTTGACAAGGCACGCATGGCAGTTAACATGAAAAATGCCGACATGAAGGATATGCAAGCCCACACTTACGTGGAGAATCTGAAGGAACAGTATGGAACTAAACCATCCACACTTTGCCTCATTTACAATGCTACTGGGAACACTATGACGTTGGTCGGTAGTAAAGATTGGGTTGGGCACATTGGACGAGTCCCATACCCAATAGTAATTCAAAATGGCCAGTGGGGTGCGTTTTTGCATGTCGGAGACTCTAATGGATCTATGGCAGGTGTTGTGTATCGCGGCAAGAACGGAACGATAGGCAACGACTGTGACTACATCATGGCTTGGTCCAACGGAGAGAGGAGAGGAGTATATGAGCCATATATAGATCACCACTCTGTCTGGACTGAGGCCCGCGAAGTGAACCACTTCACTGATGCAGTATCGAGCTACTTAAATAAAAAGCTTAAAAATACTTGCTACAACTACCGCGACTCATGGGAGGGAGGCTTGTCAATTATATCAACTGGCAGTGGCACTTCCCCTGTGGTGGAAGCAACATTCACTTTAGAAGATGCCGTCAATGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

218

Amino Acids

23.77

Weight (kDa)

5.84

Isoelectric Point (pI)

14.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nakanori PF21230 32 - 198 8.1e-33 Nakanori-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 338
Acc36I ACCTGC 1 cut(s) 338
AccII CGCG 3 cut(s) 363, 480, 555
AciI CCGC 5 cut(s) 66, 78, 363, 478, 553
AclWI GGATC 1 cut(s) 346
AcoI YGGCCR 1 cut(s) 298
AcuI CTGAAG 1 cut(s) 182
AfiI CCNNNNNNNGG 1 cut(s) 613
AflIII ACRYGT 1 cut(s) 9
AgsI TTSAA 1 cut(s) 293
AleI CACNNNNGTG 1 cut(s) 149
AluBI AGCT 2 cut(s) 513, 529
AluI AGCT 2 cut(s) 513, 529
Alw26I GTCTC 1 cut(s) 321
AlwI GGATC 1 cut(s) 346
AoxI GGCC 2 cut(s) 298, 474
Asp700I GAANNNNTTC 1 cut(s) 491
AspS9I GGNCC 2 cut(s) 411, 475
AsuHPI GGTGA 1 cut(s) 446
AvaII GGWCC 1 cut(s) 411
BaeGI GKGCMC 1 cut(s) 261
BalI TGGCCA 1 cut(s) 300
BccI CCATC 1 cut(s) 193
BceAI ACGGC 1 cut(s) 626
BcoDI GTCTC 1 cut(s) 321
BfuAI ACCTGC 1 cut(s) 338
BisI GCNGC 1 cut(s) 364
BlsI GCNGC 1 cut(s) 365
Bme18I GGWCC 1 cut(s) 411
BmgT120I GGNCC 2 cut(s) 411, 475
BmrI ACTGGG 1 cut(s) 225
BmsI GCATC 2 cut(s) 490, 628
BmuI ACTGGG 1 cut(s) 225
BoxI GACNNNNGTC 1 cut(s) 233
BsaAI YACGTR 1 cut(s) 151
Bsc4I CCNNNNNNNGG 1 cut(s) 613
Bse1I ACTGG 3 cut(s) 220, 301, 595
BseGI GGATG 1 cut(s) 185
BseLI CCNNNNNNNGG 1 cut(s) 613
BseMII CTCAG 1 cut(s) 462
BseNI ACTGG 3 cut(s) 220, 301, 595
BseRI GAGGAG 2 cut(s) 439, 444
BseSI GKGCMC 1 cut(s) 261
Bsh1236I CGCG 3 cut(s) 363, 480, 555
BshFI GGCC 2 cut(s) 300, 476
BslFI GGGAC 1 cut(s) 257
BslI CCNNNNNNNGG 1 cut(s) 613
BsmAI GTCTC 1 cut(s) 321
BsmFI GGGAC 1 cut(s) 257
BsnI GGCC 2 cut(s) 300, 476
Bsp1286I GDGCHC 1 cut(s) 261
Bsp143I GATC 2 cut(s) 338, 451
BspACI CCGC 5 cut(s) 66, 78, 363, 478, 553
BspANI GGCC 2 cut(s) 300, 476
BspCNI CTCAG 1 cut(s) 463
BspFNI CGCG 3 cut(s) 363, 480, 555
BspMI ACCTGC 1 cut(s) 338
BspPI GGATC 1 cut(s) 346
BsrI ACTGG 3 cut(s) 220, 301, 595
BssMI GATC 2 cut(s) 338, 451
Bst4CI ACNGT 2 cut(s) 171, 392
BstAPI GCANNNNNTGC 1 cut(s) 59
BstBAI YACGTR 1 cut(s) 151
BstC8I GCNNGC 5 cut(s) 64, 68, 94, 138, 478
BstDEI CTNAG 1 cut(s) 471
BstF5I GGATG 1 cut(s) 185
BstFNI CGCG 3 cut(s) 363, 480, 555
BstKTI GATC 2 cut(s) 341, 454
BstMAI GTCTC 1 cut(s) 321
BstMBI GATC 2 cut(s) 338, 451
BstMWI GCNNNNNNNGC 3 cut(s) 59, 98, 647
BstNSI RCATGY 1 cut(s) 323
BstPAI GACNNNNGTC 1 cut(s) 233
BstSLI GKGCMC 1 cut(s) 261
BstUI CGCG 3 cut(s) 363, 480, 555
BstX2I RGATCY 1 cut(s) 338
BstYI RGATCY 1 cut(s) 338
BsuRI GGCC 2 cut(s) 300, 476
BtsCI GGATG 1 cut(s) 185
BtsI GCAGTG 1 cut(s) 601
BtsIMutI CAGTG 3 cut(s) 308, 495, 601
BveI ACCTGC 1 cut(s) 338
Cac8I GCNNGC 5 cut(s) 64, 68, 94, 138, 478
Cfr13I GGNCC 2 cut(s) 411, 475
CviAII CATG 6 cut(s) 97, 109, 124, 320, 403, 561
CviJI RGCY 8 cut(s) 140, 300, 407, 442, 476, 513, 529, 573
CviKI_1 RGCY 8 cut(s) 140, 300, 407, 442, 476, 513, 529, 573
DdeI CTNAG 1 cut(s) 471
DpnI GATC 2 cut(s) 340, 453
DpnII GATC 2 cut(s) 338, 451
EaeI YGGCCR 1 cut(s) 298
Eco47I GGWCC 1 cut(s) 411
Eco57I CTGAAG 1 cut(s) 182
FaeI CATG 6 cut(s) 100, 112, 127, 323, 406, 564
FaqI GGGAC 1 cut(s) 257
FatI CATG 6 cut(s) 96, 108, 123, 319, 402, 560
FauI CCCGC 2 cut(s) 59, 485
Fnu4HI GCNGC 1 cut(s) 364
FokI GGATG 1 cut(s) 172
Fsp4HI GCNGC 1 cut(s) 364
GluI GCNGC 1 cut(s) 364
HaeIII GGCC 2 cut(s) 300, 476
Hin1II CATG 6 cut(s) 100, 112, 127, 323, 406, 564
HincII GTYRAC 2 cut(s) 85, 106
HindII GTYRAC 2 cut(s) 85, 106
HindIII AAGCTT 1 cut(s) 527
HinfI GANTC 5 cut(s) 32, 157, 270, 329, 557
HpaI GTTAAC 1 cut(s) 106
HphI GGTGA 1 cut(s) 446
Hpy166II GTNNAC 3 cut(s) 85, 106, 487
Hpy188I TCNGA 2 cut(s) 162, 326
Hpy188III TCNNGA 1 cut(s) 466
Hpy8I GTNNAC 3 cut(s) 85, 106, 487
HpyAV CCTTC 2 cut(s) 121, 157
HpyCH4III ACNGT 2 cut(s) 171, 392
HpyCH4IV ACGT 3 cut(s) 9, 150, 230
HpyCH4V TGCA 3 cut(s) 136, 319, 503
HpyF10VI GCNNNNNNNGC 3 cut(s) 59, 98, 647
HpyF3I CTNAG 1 cut(s) 471
HpySE526I ACGT 3 cut(s) 9, 150, 230
Hsp92II CATG 6 cut(s) 100, 112, 127, 323, 406, 564
KspAI GTTAAC 1 cut(s) 106
Kzo9I GATC 2 cut(s) 338, 451
LpnPI CCDG 8 cut(s) 48, 53, 201, 314, 333, 451, 576, 621
LweI GCATC 2 cut(s) 490, 628
MaeII ACGT 3 cut(s) 9, 150, 230
MaeIII GTNAC 1 cut(s) 392
MalI GATC 2 cut(s) 340, 453
MboI GATC 2 cut(s) 338, 451
MboII GAAGA 1 cut(s) 647
MflI RGATCY 1 cut(s) 338
MhlI GDGCHC 1 cut(s) 261
MlsI TGGCCA 1 cut(s) 300
MluCI AATT 2 cut(s) 288, 579
MluNI TGGCCA 1 cut(s) 300
MlyI GAGTC 4 cut(s) 26, 279, 323, 551
MmeI TCCRAC 2 cut(s) 304, 438
MnlI CCTC 6 cut(s) 209, 417, 422, 466, 559, 563
Mox20I TGGCCA 1 cut(s) 300
MroXI GAANNNNTTC 1 cut(s) 491
MscI TGGCCA 1 cut(s) 300
MseI TTAA 3 cut(s) 105, 518, 531
MslI CAYNNNNRTG 1 cut(s) 149
Msp20I TGGCCA 1 cut(s) 300
MvnI CGCG 3 cut(s) 363, 480, 555
MwoI GCNNNNNNNGC 3 cut(s) 59, 98, 647
NdeII GATC 2 cut(s) 338, 451
NlaIII CATG 6 cut(s) 100, 112, 127, 323, 406, 564
NmuCI GTSAC 1 cut(s) 392
NspI RCATGY 1 cut(s) 323
OliI CACNNNNGTG 1 cut(s) 149
PaqCI CACCTGC 1 cut(s) 338
PdmI GAANNNNTTC 1 cut(s) 491
PfeI GAWTC 1 cut(s) 157
PkrI GCNGC 1 cut(s) 365
PleI GAGTC 4 cut(s) 26, 278, 323, 551
PpsI GAGTC 4 cut(s) 26, 278, 323, 551
Ppu21I YACGTR 1 cut(s) 151
PshAI GACNNNNGTC 1 cut(s) 233
PspPI GGNCC 2 cut(s) 411, 475
PsuI RGATCY 1 cut(s) 338
RseI CAYNNNNRTG 1 cut(s) 149
SaqAI TTAA 3 cut(s) 105, 518, 531
SatI GCNGC 1 cut(s) 364
Sau3AI GATC 2 cut(s) 338, 451
Sau96I GGNCC 2 cut(s) 411, 475
SchI GAGTC 4 cut(s) 26, 279, 323, 551
SduI GDGCHC 1 cut(s) 261
SetI ASST 6 cut(s) 12, 153, 233, 352, 515, 531
SfaNI GCATC 2 cut(s) 490, 628
SinI GGWCC 1 cut(s) 411
SmiMI CAYNNNNRTG 1 cut(s) 149
Sse9I AATT 2 cut(s) 288, 579
SsiI CCGC 5 cut(s) 66, 78, 363, 478, 553
TaaI ACNGT 2 cut(s) 171, 392
TaiI ACGT 3 cut(s) 12, 153, 233
TaqI TCGA 2 cut(s) 35, 509
TasI AATT 2 cut(s) 288, 579
TauI GCSGC 1 cut(s) 366
TfiI GAWTC 1 cut(s) 157
Tru1I TTAA 3 cut(s) 105, 518, 531
Tru9I TTAA 3 cut(s) 105, 518, 531
TscAI CASTG 3 cut(s) 308, 502, 601
TseFI GTSAC 1 cut(s) 392
Tsp45I GTSAC 1 cut(s) 392
TspDTI ATGAA 2 cut(s) 125, 140
TspGWI ACGGA 2 cut(s) 387, 432
TspRI CASTG 3 cut(s) 308, 502, 601
VpaK11BI GGWCC 1 cut(s) 411
XceI RCATGY 1 cut(s) 323
XmnI GAANNNNTTC 1 cut(s) 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.