pycom09g08020

23 kDa jasmonate-induced protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0001765
Physical Location & Seq
Reverse (-)
6151288 .. 6152046
759 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g08020.2

Sequence Viewer

Length: 639 bp
ATGGCGTATAACGTTTTTGGCAACCCCATCACGGATGAAACTTTGAAGGGGATGCCAGAGTATGCCAACAAGGAAATAGGAAGATTAGACAGGGCACGCGTGGCGCTGAATATGAAAAATGCCGCGGAGAAGGACGTCAACGCTCGAACATATGTGGAGAAACTGAAGGAGCAGTATGGCAACGGAGTCTCCACACTCTGCCTTGTTTACAATGCAACTGGGGACACCATAAGATATGCTTATAGCAAAAATTGGTATGGGCACATCGGGACGGCACCATACCCACAGGAGATTGCAAATGGTCAGTGGGGTGCGTTTCTGCACGTCAAAACTGCCGGAGCGGCTACTGGATCCACTGCTGCTGTTGTGTACCGAGGCCAGAATAACGATGATAGCGAATGCGACTGGTTGTTGTCATGGAGCAACCCATGGAACAGGATTAGCTGGGACAACACGGTCTATACGGAGATTCGAGAGCCTAATCACTTTGAATCTCATTGGAGCTTCATCTATAAGGAGAAATTGTCGAAAGGTCAATTGCACAGCACGGACACATGGAATGGATGCGTGTCAACCATGTCAACTGGCAGTGACACTTCCCCAATTGTTGAAGCAATACTCACTTTAGAAAATGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

213

Amino Acids

23.75

Weight (kDa)

5.54

Isoelectric Point (pI)

22.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 455
AatII GACGTC 1 cut(s) 138
AccB1I GGYRCC 1 cut(s) 274
AccBSI CCGCTC 1 cut(s) 341
AccII CGCG 2 cut(s) 99, 125
AciI CCGC 3 cut(s) 123, 125, 341
AclI AACGTT 1 cut(s) 12
AclWI GGATC 2 cut(s) 345, 358
AcuI CTGAAG 1 cut(s) 185
AcyI GRCGYC 1 cut(s) 135
AfaI GTAC 1 cut(s) 371
AfiI CCNNNNNNNGG 1 cut(s) 31
AflIII ACRYGT 1 cut(s) 97
AgsI TTSAA 3 cut(s) 46, 491, 611
AjiI CACGTC 1 cut(s) 325
AluBI AGCT 2 cut(s) 444, 504
AluI AGCT 2 cut(s) 444, 504
Alw26I GTCTC 1 cut(s) 193
AlwI GGATC 2 cut(s) 345, 358
AoxI GGCC 1 cut(s) 376
ApeKI GCWGC 1 cut(s) 359
AspLEI GCGC 1 cut(s) 106
BaeGI GKGCMC 2 cut(s) 97, 264
BamHI GGATCC 1 cut(s) 350
BanI GGYRCC 1 cut(s) 274
BbvI GCAGC 1 cut(s) 346
BccI CCATC 1 cut(s) 35
BceAI ACGGC 1 cut(s) 288
BcoDI GTCTC 1 cut(s) 193
BfoI RGCGCY 1 cut(s) 107
BglI GCCNNNNNGGC 1 cut(s) 341
BisI GCNGC 3 cut(s) 123, 342, 360
BlsI GCNGC 3 cut(s) 124, 343, 361
BmgBI CACGTC 1 cut(s) 325
BmiI GGNNCC 2 cut(s) 276, 352
BmrI ACTGGG 1 cut(s) 228
BmsI GCATC 2 cut(s) 42, 554
BmuI ACTGGG 1 cut(s) 228
BsaHI GRCGYC 1 cut(s) 135
BsaJI CCNNGG 3 cut(s) 123, 373, 428
BsaXI ACNNNNNCTCC 4 cut(s) 173, 203, 509, 539
Bsc4I CCNNNNNNNGG 1 cut(s) 31
Bse1I ACTGG 4 cut(s) 223, 352, 410, 589
BseDI CCNNGG 3 cut(s) 123, 373, 428
BseGI GGATG 3 cut(s) 40, 57, 569
BseLI CCNNNNNNNGG 1 cut(s) 31
BseNI ACTGG 4 cut(s) 223, 352, 410, 589
BseSI GKGCMC 2 cut(s) 97, 264
BseXI GCAGC 1 cut(s) 346
BseYI CCCAGC 1 cut(s) 444
BsgI GTGCAG 1 cut(s) 305
Bsh1236I CGCG 2 cut(s) 99, 125
BshFI GGCC 1 cut(s) 378
BshNI GGYRCC 1 cut(s) 274
BsiSI CCGG 1 cut(s) 336
BslFI GGGAC 3 cut(s) 236, 283, 461
BslI CCNNNNNNNGG 1 cut(s) 31
BsmAI GTCTC 1 cut(s) 193
BsmFI GGGAC 3 cut(s) 236, 283, 461
BsmI GAATGC 1 cut(s) 404
BsnI GGCC 1 cut(s) 378
Bsp1286I GDGCHC 2 cut(s) 97, 264
Bsp143I GATC 1 cut(s) 350
Bsp19I CCATGG 1 cut(s) 428
BspACI CCGC 3 cut(s) 123, 125, 341
BspANI GGCC 1 cut(s) 378
BspFNI CGCG 2 cut(s) 99, 125
BspLI GGNNCC 2 cut(s) 276, 352
BspPI GGATC 2 cut(s) 345, 358
BspT107I GGYRCC 1 cut(s) 274
BsrBI CCGCTC 1 cut(s) 341
BsrI ACTGG 4 cut(s) 223, 352, 410, 589
BssECI CCNNGG 3 cut(s) 123, 373, 428
BssMI GATC 1 cut(s) 350
BssNI GRCGYC 1 cut(s) 135
BssT1I CCWWGG 1 cut(s) 428
Bst4CI ACNGT 1 cut(s) 457
BstACI GRCGYC 1 cut(s) 135
BstC8I GCNNGC 1 cut(s) 97
BstDSI CCRYGG 2 cut(s) 123, 428
BstF5I GGATG 3 cut(s) 40, 57, 569
BstFNI CGCG 2 cut(s) 99, 125
BstH2I RGCGCY 1 cut(s) 107
BstHHI GCGC 1 cut(s) 106
BstKTI GATC 1 cut(s) 353
BstMAI GTCTC 1 cut(s) 193
BstMBI GATC 1 cut(s) 350
BstMWI GCNNNNNNNGC 2 cut(s) 101, 341
BstSLI GKGCMC 2 cut(s) 97, 264
BstUI CGCG 2 cut(s) 99, 125
BstV1I GCAGC 1 cut(s) 346
BstX2I RGATCY 1 cut(s) 350
BstYI RGATCY 1 cut(s) 350
BsuRI GGCC 1 cut(s) 378
BtgI CCRYGG 2 cut(s) 123, 428
BtrI CACGTC 1 cut(s) 325
BtsCI GGATG 3 cut(s) 40, 57, 569
BtsI GCAGTG 2 cut(s) 354, 595
BtsIMutI CAGTG 3 cut(s) 311, 354, 595
Cac8I GCNNGC 1 cut(s) 97
CfoI GCGC 1 cut(s) 106
Cfr42I CCGCGG 1 cut(s) 126
Csp6I GTAC 1 cut(s) 370
CviAII CATG 4 cut(s) 417, 429, 555, 577
CviJI RGCY 5 cut(s) 344, 378, 444, 478, 504
CviKI_1 RGCY 5 cut(s) 344, 378, 444, 478, 504
CviQI GTAC 1 cut(s) 370
DpnI GATC 1 cut(s) 352
DpnII GATC 1 cut(s) 350
DrdI GACNNNNNNGTC 1 cut(s) 455
DseDI GACNNNNNNGTC 1 cut(s) 455
Eco130I CCWWGG 1 cut(s) 428
Eco57I CTGAAG 1 cut(s) 185
EcoT14I CCWWGG 1 cut(s) 428
ErhI CCWWGG 1 cut(s) 428
FaeI CATG 4 cut(s) 420, 432, 558, 580
FalI AAGNNNNNCTT 2 cut(s) 223, 255
FaqI GGGAC 3 cut(s) 236, 283, 461
FatI CATG 4 cut(s) 416, 428, 554, 576
FauNDI CATATG 1 cut(s) 151
Fnu4HI GCNGC 3 cut(s) 123, 342, 360
FokI GGATG 3 cut(s) 47, 64, 576
Fsp4HI GCNGC 3 cut(s) 123, 342, 360
GlaI GCGC 1 cut(s) 105
GluI GCNGC 3 cut(s) 123, 342, 360
GsaI CCCAGC 1 cut(s) 448
HaeII RGCGCY 1 cut(s) 107
HaeIII GGCC 1 cut(s) 378
HapII CCGG 1 cut(s) 336
HhaI GCGC 1 cut(s) 106
Hin1I GRCGYC 1 cut(s) 135
Hin1II CATG 4 cut(s) 420, 432, 558, 580
Hin6I GCGC 1 cut(s) 104
HinP1I GCGC 1 cut(s) 104
HincII GTYRAC 3 cut(s) 139, 573, 582
HindII GTYRAC 3 cut(s) 139, 573, 582
HinfI GANTC 3 cut(s) 186, 469, 491
HpaII CCGG 1 cut(s) 336
Hpy166II GTNNAC 5 cut(s) 139, 208, 370, 573, 582
Hpy188III TCNNGA 2 cut(s) 268, 473
Hpy8I GTNNAC 5 cut(s) 139, 208, 370, 573, 582
HpyAV CCTTC 3 cut(s) 40, 124, 160
HpyCH4III ACNGT 1 cut(s) 457
HpyCH4IV ACGT 3 cut(s) 12, 135, 324
HpyCH4V TGCA 4 cut(s) 215, 296, 322, 541
HpyF10VI GCNNNNNNNGC 2 cut(s) 101, 341
HpySE526I ACGT 3 cut(s) 12, 135, 324
Hsp92I GRCGYC 1 cut(s) 135
Hsp92II CATG 4 cut(s) 420, 432, 558, 580
HspAI GCGC 1 cut(s) 104
KspI CCGCGG 1 cut(s) 126
Kzo9I GATC 1 cut(s) 350
LmnI GCTCC 4 cut(s) 169, 338, 420, 501
Lsp1109I GCAGC 1 cut(s) 346
LweI GCATC 2 cut(s) 42, 554
MaeII ACGT 3 cut(s) 12, 135, 324
MaeIII GTNAC 1 cut(s) 590
MalI GATC 1 cut(s) 352
MbiI CCGCTC 1 cut(s) 341
MboI GATC 1 cut(s) 350
MboII GAAGA 1 cut(s) 93
MfeI CAATTG 2 cut(s) 536, 603
MflI RGATCY 1 cut(s) 350
MhlI GDGCHC 2 cut(s) 97, 264
MluCI AATT 4 cut(s) 250, 521, 536, 603
MluI ACGCGT 1 cut(s) 97
MlyI GAGTC 1 cut(s) 195
MnlI CCTC 1 cut(s) 368
MspA1I CMGCKG 1 cut(s) 125
MspI CCGG 1 cut(s) 336
MunI CAATTG 2 cut(s) 536, 603
Mva1269I GAATGC 1 cut(s) 404
MvnI CGCG 2 cut(s) 99, 125
MwoI GCNNNNNNNGC 2 cut(s) 101, 341
NcoI CCATGG 1 cut(s) 428
NdeI CATATG 1 cut(s) 151
NdeII GATC 1 cut(s) 350
NlaIII CATG 4 cut(s) 420, 432, 558, 580
NlaIV GGNNCC 2 cut(s) 276, 352
NmuCI GTSAC 1 cut(s) 590
PcsI WCGNNNNNNNCGW 1 cut(s) 393
PctI GAATGC 1 cut(s) 404
PfeI GAWTC 2 cut(s) 469, 491
PkrI GCNGC 3 cut(s) 124, 343, 361
PleI GAGTC 1 cut(s) 194
PpsI GAGTC 1 cut(s) 194
Psp1406I AACGTT 1 cut(s) 12
PspFI CCCAGC 1 cut(s) 444
PspN4I GGNNCC 2 cut(s) 276, 352
PsuI RGATCY 1 cut(s) 350
RsaI GTAC 1 cut(s) 371
RsaNI GTAC 1 cut(s) 370
SacII CCGCGG 1 cut(s) 126
SatI GCNGC 3 cut(s) 123, 342, 360
Sau3AI GATC 1 cut(s) 350
SchI GAGTC 1 cut(s) 195
SduI GDGCHC 2 cut(s) 97, 264
SetI ASST 6 cut(s) 15, 138, 327, 446, 506, 535
SfaNI GCATC 2 cut(s) 42, 554
Sfr303I CCGCGG 1 cut(s) 126
SgrBI CCGCGG 1 cut(s) 126
Sse9I AATT 4 cut(s) 250, 521, 536, 603
SsiI CCGC 3 cut(s) 123, 125, 341
StyI CCWWGG 1 cut(s) 428
TaaI ACNGT 1 cut(s) 457
TaiI ACGT 3 cut(s) 15, 138, 327
TaqI TCGA 3 cut(s) 145, 472, 527
TasI AATT 4 cut(s) 250, 521, 536, 603
TauI GCSGC 2 cut(s) 125, 344
TfiI GAWTC 2 cut(s) 469, 491
TscAI CASTG 3 cut(s) 311, 361, 595
TseFI GTSAC 1 cut(s) 590
TseI GCWGC 1 cut(s) 359
Tsp45I GTSAC 1 cut(s) 590
TspDTI ATGAA 3 cut(s) 51, 128, 496
TspGWI ACGGA 4 cut(s) 47, 198, 479, 563
TspRI CASTG 3 cut(s) 311, 361, 595
ZraI GACGTC 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.