Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001765

Physical Location & Seq

Genomic Coordinates Reverse (-)

67882731 .. 67883069

Gene Structure 339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG461500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGAAGGATACGAACGCCCGCACTTACGTGGAGAATCTGAAGAAGCAGTATTGTTCCGCAAAAGTAGGCACACTGCGCCTCGTTTACAATGCTACAGGGAACACTATGACTTTGGTTGGTAATAAAGATTGGGTTGGGCACATTGGACAAGCTCCATACCCAATAGAAATTCAAAATGGCCAGTGGGATGCATTTTTGCACGCCAAAGAATCTGGAGCGACAACTGGATCTATGGCAGGTGTTGTGTATTGCGGCAAGGATCCGAAGGAAGGCAAGCCCTGTGACTACACGTTGGCCTGGTCCAACTCAAGCGTGACATCAGTAAATATATTAACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

112

Amino Acids

12.18

Weight (kDa)

8.44

Isoelectric Point (pI)

19.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nakanori	PF21230	3 - 103	2.6e-28	Nakanori-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001765)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g36010
malus_domestica	MD05G1102400.v1.1 MD09G1162600.v1.1 MD09G1162700.v1.1 MD09G1162900.v1.1 MD09G1163100.v1.1 MD17G1147700.v1.1 MD17G1148000.v1.1 MD17G1148100.v1.1 MD17G1148200.v1.1
prunus_persica	Prupe.1G577300_v2.0.a1 Prupe.2G116800_v2.0.a1 Prupe.2G116900_v2.0.a1
pyrus_communis	pycom09g08020 pycom09g08070 pycom17g14020 pycom17g14090 pycom17g14130
rosa_laevigata	RLG00000019195 RLG00000019197 RLG00000020315 RLG00000020317 RLG00000020337
rosa_multiflora	Rmu_sc0001516.1_g000044 Rmu_sc0001516.1_g000051 Rmu_sc0001516.1_g000054 Rmu_sc0004032.1_g000004
rosa_roxburghii	Rroxscaffold_2G00098880 Rroxscaffold_2G00098890 Rroxscaffold_2G00099060 Rroxscaffold_2G00099100 Rroxscaffold_2G00099110 Rroxscaffold_2G00101280
rosa_rugosa	Rorug02G0403500 Rorug02G0403600 Rorug02G0405600 Rorug02G0405700
rosa_samantha	Rh2AG461500 Rh2AG461700 Rh2AG464500 Rh2BG477400 Rh2CG448600 Rh2CG448700 Rh2CG451100 Rh2CG451200 Rh2DG486200 Rh5AG501100
rosa_wichuraiana	Rw2G037860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	227
Acc36I	ACCTGC	1 cut(s)	227
AciI	CCGC	3 cut(s)	19, 57, 252
AclWI	GGATC	3 cut(s)	235, 254, 267
AcoI	YGGCCR	1 cut(s)	178
AcsI	RAATTY	1 cut(s)	168
AcuI	CTGAAG	1 cut(s)	59
AfiI	CCNNNNNNNGG	1 cut(s)	269
AflIII	ACRYGT	1 cut(s)	288
AgsI	TTSAA	1 cut(s)	173
AjnI	CCWGG	1 cut(s)	296
AleI	CACNNNNGTG	1 cut(s)	26
AluBI	AGCT	1 cut(s)	152
AluI	AGCT	1 cut(s)	152
AlwI	GGATC	3 cut(s)	235, 254, 267
AoxI	GGCC	2 cut(s)	178, 294
ApoI	RAATTY	1 cut(s)	168
AspLEI	GCGC	1 cut(s)	78
AspS9I	GGNCC	1 cut(s)	300
AvaII	GGWCC	1 cut(s)	300
BaeGI	GKGCMC	1 cut(s)	141
BalI	TGGCCA	1 cut(s)	180
BamHI	GGATCC	1 cut(s)	259
BciT130I	CCWGG	1 cut(s)	298
BfmI	CTRYAG	1 cut(s)	93
BfuAI	ACCTGC	1 cut(s)	227
BisI	GCNGC	1 cut(s)	253
BlsI	GCNGC	1 cut(s)	254
Bme1390I	CCNGG	1 cut(s)	298
Bme18I	GGWCC	1 cut(s)	300
BmgT120I	GGNCC	1 cut(s)	300
BmiI	GGNNCC	1 cut(s)	261
BmrFI	CCNGG	1 cut(s)	298
BmsI	GCATC	1 cut(s)	178
BpmI	CTGGAG	1 cut(s)	234
BpuEI	CTTGAG	1 cut(s)	292
BsaAI	YACGTR	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	1 cut(s)	269
Bse1I	ACTGG	2 cut(s)	181, 229
BseBI	CCWGG	1 cut(s)	298
BseGI	GGATG	1 cut(s)	193
BseLI	CCNNNNNNNGG	1 cut(s)	269
BseNI	ACTGG	2 cut(s)	181, 229
BseSI	GKGCMC	1 cut(s)	141
BshFI	GGCC	2 cut(s)	180, 296
BslI	CCNNNNNNNGG	1 cut(s)	269
BsnI	GGCC	2 cut(s)	180, 296
Bsp1286I	GDGCHC	1 cut(s)	141
Bsp143I	GATC	2 cut(s)	227, 259
BspACI	CCGC	3 cut(s)	19, 57, 252
BspANI	GGCC	2 cut(s)	180, 296
BspLI	GGNNCC	1 cut(s)	261
BspMI	ACCTGC	1 cut(s)	227
BspPI	GGATC	3 cut(s)	235, 254, 267
BsrI	ACTGG	2 cut(s)	181, 229
BssMI	GATC	2 cut(s)	227, 259
Bst2UI	CCWGG	1 cut(s)	298
BstBAI	YACGTR	1 cut(s)	28
BstC8I	GCNNGC	3 cut(s)	19, 201, 275
BstF5I	GGATG	1 cut(s)	193
BstHHI	GCGC	1 cut(s)	78
BstKTI	GATC	2 cut(s)	230, 262
BstMBI	GATC	2 cut(s)	227, 259
BstMWI	GCNNNNNNNGC	1 cut(s)	75
BstNI	CCWGG	1 cut(s)	298
BstSCI	CCNGG	1 cut(s)	296
BstSFI	CTRYAG	1 cut(s)	93
BstSLI	GKGCMC	1 cut(s)	141
BstX2I	RGATCY	2 cut(s)	227, 259
BstYI	RGATCY	2 cut(s)	227, 259
BsuRI	GGCC	2 cut(s)	180, 296
BtsCI	GGATG	1 cut(s)	193
BtsI	GCAGTG	1 cut(s)	71
BtsIMutI	CAGTG	2 cut(s)	71, 188
BveI	ACCTGC	1 cut(s)	227
Cac8I	GCNNGC	3 cut(s)	19, 201, 275
CfoI	GCGC	1 cut(s)	78
Cfr13I	GGNCC	1 cut(s)	300
CviJI	RGCY	4 cut(s)	152, 180, 277, 296
CviKI_1	RGCY	4 cut(s)	152, 180, 277, 296
DpnI	GATC	2 cut(s)	229, 261
DpnII	GATC	2 cut(s)	227, 259
EaeI	YGGCCR	1 cut(s)	178
Eco47I	GGWCC	1 cut(s)	300
Eco57I	CTGAAG	1 cut(s)	59
EcoRII	CCWGG	1 cut(s)	296
EcoT22I	ATGCAT	1 cut(s)	193
FaiI	YATR	4 cut(s)	107, 157, 233, 329
FauI	CCCGC	1 cut(s)	26
Fnu4HI	GCNGC	1 cut(s)	253
FokI	GGATG	1 cut(s)	200
Fsp4HI	GCNGC	1 cut(s)	253
GlaI	GCGC	1 cut(s)	77
GluI	GCNGC	1 cut(s)	253
GsuI	CTGGAG	1 cut(s)	234
HaeIII	GGCC	2 cut(s)	180, 296
HhaI	GCGC	1 cut(s)	78
Hin6I	GCGC	1 cut(s)	76
HinP1I	GCGC	1 cut(s)	76
HinfI	GANTC	2 cut(s)	34, 209
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	2 cut(s)	39, 264
Hpy188III	TCNNGA	1 cut(s)	213
Hpy8I	GTNNAC	1 cut(s)	85
HpyAV	CCTTC	2 cut(s)	259, 263
HpyCH4IV	ACGT	2 cut(s)	27, 290
HpyCH4V	TGCA	2 cut(s)	191, 199
HpyF10VI	GCNNNNNNNGC	1 cut(s)	75
HpySE526I	ACGT	2 cut(s)	27, 290
HspAI	GCGC	1 cut(s)	76
Kzo9I	GATC	2 cut(s)	227, 259
LmnI	GCTCC	2 cut(s)	157, 215
LpnPI	CCDG	8 cut(s)	81, 194, 198, 210, 222, 283, 292, 310
LweI	GCATC	1 cut(s)	178
MaeII	ACGT	2 cut(s)	27, 290
MaeIII	GTNAC	2 cut(s)	281, 313
MalI	GATC	2 cut(s)	229, 261
MboI	GATC	2 cut(s)	227, 259
MboII	GAAGA	1 cut(s)	52
MflI	RGATCY	2 cut(s)	227, 259
MhlI	GDGCHC	1 cut(s)	141
MlsI	TGGCCA	1 cut(s)	180
MluCI	AATT	1 cut(s)	168
MluNI	TGGCCA	1 cut(s)	180
MmeI	TCCRAC	1 cut(s)	327
MnlI	CCTC	1 cut(s)	89
Mox20I	TGGCCA	1 cut(s)	180
Mph1103I	ATGCAT	1 cut(s)	193
MscI	TGGCCA	1 cut(s)	180
MseI	TTAA	1 cut(s)	332
MslI	CAYNNNNRTG	1 cut(s)	26
Msp20I	TGGCCA	1 cut(s)	180
MspR9I	CCNGG	1 cut(s)	298
MvaI	CCWGG	1 cut(s)	298
MwoI	GCNNNNNNNGC	1 cut(s)	75
NdeII	GATC	2 cut(s)	227, 259
NlaIV	GGNNCC	1 cut(s)	261
NmuCI	GTSAC	2 cut(s)	281, 313
NsiI	ATGCAT	1 cut(s)	193
OliI	CACNNNNGTG	1 cut(s)	26
PaqCI	CACCTGC	1 cut(s)	227
PfeI	GAWTC	2 cut(s)	34, 209
PkrI	GCNGC	1 cut(s)	254
Ppu21I	YACGTR	1 cut(s)	28
Psp6I	CCWGG	1 cut(s)	296
PspGI	CCWGG	1 cut(s)	296
PspN4I	GGNNCC	1 cut(s)	261
PspPI	GGNCC	1 cut(s)	300
PsuI	RGATCY	2 cut(s)	227, 259
RseI	CAYNNNNRTG	1 cut(s)	26
SaqAI	TTAA	1 cut(s)	332
SatI	GCNGC	1 cut(s)	253
Sau3AI	GATC	2 cut(s)	227, 259
Sau96I	GGNCC	1 cut(s)	300
ScrFI	CCNGG	1 cut(s)	298
SduI	GDGCHC	1 cut(s)	141
SetI	ASST	5 cut(s)	30, 154, 241, 293, 338
SfaNI	GCATC	1 cut(s)	178
SfcI	CTRYAG	1 cut(s)	93
SinI	GGWCC	1 cut(s)	300
SmiMI	CAYNNNNRTG	1 cut(s)	26
SmlI	CTYRAG	1 cut(s)	307
SmoI	CTYRAG	1 cut(s)	307
Sse9I	AATT	1 cut(s)	168
SsiI	CCGC	3 cut(s)	19, 57, 252
StyD4I	CCNGG	1 cut(s)	296
TaiI	ACGT	2 cut(s)	30, 293
TasI	AATT	1 cut(s)	168
TauI	GCSGC	1 cut(s)	255
TfiI	GAWTC	2 cut(s)	34, 209
Tru1I	TTAA	1 cut(s)	332
Tru9I	TTAA	1 cut(s)	332
TscAI	CASTG	2 cut(s)	78, 188
TseFI	GTSAC	2 cut(s)	281, 313
Tsp45I	GTSAC	2 cut(s)	281, 313
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	78, 188
VpaK11BI	GGWCC	1 cut(s)	300
XapI	RAATTY	1 cut(s)	168
Zsp2I	ATGCAT	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.