Rw2G037860

23 kDa jasmonate-induced protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0001765
Physical Location & Seq
Forward (+)
62498702 .. 62499319
618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G037860.1

Sequence Viewer

Length: 501 bp
ATGCTAAATCCCCTAAAGAGATCTTTCCAAAAATACTTTTGGGCTCAAACACCCGCCACATGCCTCCTTTACAATGCTACCGGGAACACTTTAACATTTGTTACTGTTAAAGATGAGTACGGGCACATTGGACCAGCCCCATATCCATTGCGAATTCAAAATGGCCAGTGGGGTGCATTTCTGCACGTGAAAACCGCTGAAGCTCCAACCGGATCTTATGCCGGTGTTGTGTATCGCGGCAAGAACCCCGATGGCATTGATTGGGACTGCATGATGGCATGGCGTAACCCCTTTGTGAACACCAACAACTCGGTATGGTCTGAGATCCGCGAACCGAACCACTTCGATGGAAGGTGGAGCGTAATAGCCAATCAATTGTTACAGCTTCGCTACAACTACAGTGACACGTGGCAGGGAGGCTTGTCAACTATAGCAACTGGCAGGGATACTTCCCCTATTGTGGAAGCAGTGTTCACTTTAGAAGATGCCGCCAAAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

166

Amino Acids

18.68

Weight (kDa)

6.82

Isoelectric Point (pI)

29.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nakanori PF21230 20 - 135 5.9e-25 Nakanori-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 237, 330
AciI CCGC 5 cut(s) 54, 195, 237, 328, 489
AclWI GGATC 2 cut(s) 220, 319
AcoI YGGCCR 1 cut(s) 163
AcsI RAATTY 1 cut(s) 153
AcuI CTGAAG 1 cut(s) 219
AcvI CACGTG 2 cut(s) 187, 408
AfaI GTAC 1 cut(s) 119
AfiI CCNNNNNNNGG 1 cut(s) 460
AflIII ACRYGT 1 cut(s) 405
AgsI TTSAA 1 cut(s) 158
AloI GAACNNNNNNTCC 2 cut(s) 455, 487
AluBI AGCT 2 cut(s) 203, 385
AluI AGCT 2 cut(s) 203, 385
AlwI GGATC 2 cut(s) 220, 319
AoxI GGCC 1 cut(s) 163
ApoI RAATTY 1 cut(s) 153
Asp700I GAANNNNTTC 1 cut(s) 341
AspS9I GGNCC 1 cut(s) 131
AsuC2I CCSGG 1 cut(s) 82
AvaII GGWCC 1 cut(s) 131
BaeGI GKGCMC 1 cut(s) 126
BalI TGGCCA 1 cut(s) 165
BanII GRGCYC 1 cut(s) 46
BbrPI CACGTG 2 cut(s) 187, 408
BccI CCATC 3 cut(s) 245, 268, 341
BciVI GTATCC 1 cut(s) 439
BcnI CCSGG 1 cut(s) 82
BfmI CTRYAG 2 cut(s) 397, 429
BfuI GTATCC 1 cut(s) 439
BglII AGATCT 1 cut(s) 20
BisI GCNGC 2 cut(s) 238, 489
BlsI GCNGC 2 cut(s) 239, 490
Bme1390I CCNGG 1 cut(s) 82
Bme18I GGWCC 1 cut(s) 131
BmgT120I GGNCC 1 cut(s) 131
BmrFI CCNGG 1 cut(s) 82
BmsI GCATC 1 cut(s) 475
BpuMI CCSGG 1 cut(s) 82
BsaAI YACGTR 2 cut(s) 187, 408
BsaWI WCCGGW 1 cut(s) 209
Bsc4I CCNNNNNNNGG 1 cut(s) 460
Bse118I RCCGGY 1 cut(s) 221
Bse1I ACTGG 2 cut(s) 166, 442
Bse3DI GCAATG 1 cut(s) 146
BseLI CCNNNNNNNGG 1 cut(s) 460
BseMI GCAATG 1 cut(s) 146
BseMII CTCAG 1 cut(s) 312
BseNI ACTGG 2 cut(s) 166, 442
BseSI GKGCMC 1 cut(s) 126
BsgI GTGCAG 1 cut(s) 167
Bsh1236I CGCG 2 cut(s) 237, 330
BshFI GGCC 1 cut(s) 165
BsiSI CCGG 3 cut(s) 81, 210, 222
BslFI GGGAC 1 cut(s) 278
BslI CCNNNNNNNGG 1 cut(s) 460
BsmFI GGGAC 1 cut(s) 278
BsnI GGCC 1 cut(s) 165
Bsp1286I GDGCHC 2 cut(s) 46, 126
Bsp143I GATC 3 cut(s) 20, 212, 324
BspACI CCGC 5 cut(s) 54, 195, 237, 328, 489
BspANI GGCC 1 cut(s) 165
BspCNI CTCAG 1 cut(s) 313
BspFNI CGCG 2 cut(s) 237, 330
BspPI GGATC 2 cut(s) 220, 319
BsrDI GCAATG 1 cut(s) 146
BsrFI RCCGGY 1 cut(s) 221
BsrI ACTGG 2 cut(s) 166, 442
BssAI RCCGGY 1 cut(s) 221
BssMI GATC 3 cut(s) 20, 212, 324
Bst4CI ACNGT 2 cut(s) 106, 401
BstBAI YACGTR 2 cut(s) 187, 408
BstDEI CTNAG 1 cut(s) 321
BstFNI CGCG 2 cut(s) 237, 330
BstKTI GATC 3 cut(s) 23, 215, 327
BstMBI GATC 3 cut(s) 20, 212, 324
BstMWI GCNNNNNNNGC 1 cut(s) 494
BstNSI RCATGY 1 cut(s) 63
BstSCI CCNGG 1 cut(s) 80
BstSFI CTRYAG 2 cut(s) 397, 429
BstSLI GKGCMC 1 cut(s) 126
BstUI CGCG 2 cut(s) 237, 330
BstX2I RGATCY 3 cut(s) 20, 212, 324
BstXI CCANNNNNNTGG 1 cut(s) 347
BstYI RGATCY 3 cut(s) 20, 212, 324
BsuI GTATCC 1 cut(s) 439
BsuRI GGCC 1 cut(s) 165
BtsI GCAGTG 1 cut(s) 474
BtsIMutI CAGTG 3 cut(s) 173, 406, 474
Cfr10I RCCGGY 1 cut(s) 221
Cfr13I GGNCC 1 cut(s) 131
Csp6I GTAC 1 cut(s) 118
CviAII CATG 3 cut(s) 60, 271, 279
CviJI RGCY 8 cut(s) 44, 137, 165, 203, 368, 385, 420, 497
CviKI_1 RGCY 8 cut(s) 44, 137, 165, 203, 368, 385, 420, 497
CviQI GTAC 1 cut(s) 118
DdeI CTNAG 1 cut(s) 321
DpnI GATC 3 cut(s) 22, 214, 326
DpnII GATC 3 cut(s) 20, 212, 324
EaeI YGGCCR 1 cut(s) 163
Eco24I GRGCYC 1 cut(s) 46
Eco47I GGWCC 1 cut(s) 131
Eco57I CTGAAG 1 cut(s) 219
Eco72I CACGTG 2 cut(s) 187, 408
EcoRI GAATTC 1 cut(s) 153
EcoT38I GRGCYC 1 cut(s) 46
FaeI CATG 3 cut(s) 63, 274, 282
FaiI YATR 7 cut(s) 61, 142, 219, 272, 280, 316, 431
FaqI GGGAC 1 cut(s) 278
FatI CATG 3 cut(s) 59, 270, 278
FauI CCCGC 1 cut(s) 61
Fnu4HI GCNGC 2 cut(s) 238, 489
FriOI GRGCYC 1 cut(s) 46
Fsp4HI GCNGC 2 cut(s) 238, 489
GluI GCNGC 2 cut(s) 238, 489
HaeIII GGCC 1 cut(s) 165
HapII CCGG 3 cut(s) 81, 210, 222
Hin1II CATG 3 cut(s) 63, 274, 282
HincII GTYRAC 1 cut(s) 426
HindII GTYRAC 1 cut(s) 426
HpaII CCGG 3 cut(s) 81, 210, 222
Hpy166II GTNNAC 3 cut(s) 298, 426, 474
Hpy188I TCNGA 1 cut(s) 322
Hpy8I GTNNAC 3 cut(s) 298, 426, 474
HpyAV CCTTC 1 cut(s) 345
HpyCH4III ACNGT 2 cut(s) 106, 401
HpyCH4IV ACGT 2 cut(s) 186, 407
HpyCH4V TGCA 3 cut(s) 176, 184, 270
HpyF10VI GCNNNNNNNGC 1 cut(s) 494
HpyF3I CTNAG 1 cut(s) 321
HpySE526I ACGT 2 cut(s) 186, 407
Hsp92II CATG 3 cut(s) 63, 274, 282
Kzo9I GATC 3 cut(s) 20, 212, 324
LmnI GCTCC 2 cut(s) 208, 357
LpnPI CCDG 8 cut(s) 94, 147, 179, 223, 235, 398, 423, 427
LweI GCATC 1 cut(s) 475
MaeII ACGT 2 cut(s) 186, 407
MaeIII GTNAC 4 cut(s) 100, 284, 378, 401
MalI GATC 3 cut(s) 22, 214, 326
MboI GATC 3 cut(s) 20, 212, 324
MboII GAAGA 1 cut(s) 494
MfeI CAATTG 1 cut(s) 374
MflI RGATCY 3 cut(s) 20, 212, 324
MhlI GDGCHC 2 cut(s) 46, 126
MlsI TGGCCA 1 cut(s) 165
MluCI AATT 2 cut(s) 153, 374
MluNI TGGCCA 1 cut(s) 165
MmeI TCCRAC 1 cut(s) 230
MnlI CCTC 2 cut(s) 74, 410
Mox20I TGGCCA 1 cut(s) 165
MroXI GAANNNNTTC 1 cut(s) 341
MscI TGGCCA 1 cut(s) 165
MseI TTAA 2 cut(s) 92, 108
MslI CAYNNNNRTG 1 cut(s) 345
Msp20I TGGCCA 1 cut(s) 165
MspA1I CMGCKG 1 cut(s) 197
MspI CCGG 3 cut(s) 81, 210, 222
MspR9I CCNGG 1 cut(s) 82
MunI CAATTG 1 cut(s) 374
MvnI CGCG 2 cut(s) 237, 330
MwoI GCNNNNNNNGC 1 cut(s) 494
NciI CCSGG 1 cut(s) 82
NdeII GATC 3 cut(s) 20, 212, 324
NlaIII CATG 3 cut(s) 63, 274, 282
NmuCI GTSAC 1 cut(s) 401
NspI RCATGY 1 cut(s) 63
PdmI GAANNNNTTC 1 cut(s) 341
PkrI GCNGC 2 cut(s) 239, 490
PmaCI CACGTG 2 cut(s) 187, 408
PmlI CACGTG 2 cut(s) 187, 408
Ppu21I YACGTR 2 cut(s) 187, 408
PspCI CACGTG 2 cut(s) 187, 408
PspPI GGNCC 1 cut(s) 131
PsuI RGATCY 3 cut(s) 20, 212, 324
RsaI GTAC 1 cut(s) 119
RsaNI GTAC 1 cut(s) 118
RseI CAYNNNNRTG 1 cut(s) 345
SaqAI TTAA 2 cut(s) 92, 108
SatI GCNGC 2 cut(s) 238, 489
Sau3AI GATC 3 cut(s) 20, 212, 324
Sau96I GGNCC 1 cut(s) 131
ScrFI CCNGG 1 cut(s) 82
SduI GDGCHC 2 cut(s) 46, 126
SetI ASST 5 cut(s) 189, 205, 356, 387, 410
SfaNI GCATC 1 cut(s) 475
SfcI CTRYAG 2 cut(s) 397, 429
SinI GGWCC 1 cut(s) 131
SmiMI CAYNNNNRTG 1 cut(s) 345
Sse9I AATT 2 cut(s) 153, 374
SsiI CCGC 5 cut(s) 54, 195, 237, 328, 489
StyD4I CCNGG 1 cut(s) 80
TaaI ACNGT 2 cut(s) 106, 401
TaiI ACGT 2 cut(s) 189, 410
TaqI TCGA 1 cut(s) 345
TasI AATT 2 cut(s) 153, 374
TauI GCSGC 2 cut(s) 240, 491
Tru1I TTAA 2 cut(s) 92, 108
Tru9I TTAA 2 cut(s) 92, 108
TscAI CASTG 3 cut(s) 173, 406, 474
TseFI GTSAC 1 cut(s) 401
Tsp45I GTSAC 1 cut(s) 401
TspRI CASTG 3 cut(s) 173, 406, 474
VpaK11BI GGWCC 1 cut(s) 131
XapI RAATTY 1 cut(s) 153
XceI RCATGY 1 cut(s) 63
XmnI GAANNNNTTC 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.