Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001225

Physical Location & Seq

Genomic Coordinates Forward (+)

9880072 .. 9883448

Gene Structure 3377 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g10450.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1857 bp

ATGCAAACCAACGCCTTCCAAATCATAGTTCCCAAACCAATGATCCCCGCACTGATAAATCCACCTGCGGTGCACCGCCCTCCTTCGTCGACCCCGCTCCTTAAACCACCACGTGCCATCTCCATTTCCACACCCAACGGAGGTACTACTACCACCACCACCGTTTCACCCCTAGACGTGGTCGACGACTCCGTTACCGCATTCTGGGACTACCAGTTCCTCTTCGTCTCGCAACGCTCCGAAACAACTGAACCAGTGACACTCCGAGTGGTTGAAGGCGCTGTCCCGCCGGAGTTTCCTTCTGGAACGTACTACTTGACGGGACCGGGGATCTTCAGCGACGACCATGGCTCAACAGTGCACCCTTTGGACGGTCATGGCTACCTTAGGGCTTTTAGCTTCGGTAAGACTAACGGGGACGAGGTCAAGGTCGAGTTCATGGCCAAGTACGTGAAGACGGAGGCGCAGGTGGAAGAGCACGATCCGGTGACCGGAACGTGGAGGTTCACGCACAGGGGGCCGTTCTCGGTGTTGAAGGGAGGAAAGAAAGTTGGGAACACGAAGGTGATGAAGAACGTGGCGAATACTAGTGTGTTGAGCTGGGGTGGGAAGTTGCTGTGTTTGTGGGAAGGTGGAGACCCGTATGAGATTGAACCGGAGACCTTGGATACGGTCGGGAAGGTCAAGCTGATGGAGGGCTGTGATCCGGCGGTGGAGACTGGTGGCGGTGGCGGTGGTGTATGGGATGTGGCTGCGAGGTTGCTGAAGCCGATCTTGTACGGAGTGTTTGAAATGCCGCCTAAGAGACTATTATCTCATTACAAGCTCGACAGTTGCAGAAATAGGCTTCTTATGGTGTCGTGCAATGCAGAAGACATGCTTCTACCACGCAGTCATTTTATATTTTATGAATATGACTCGAGTTTTAAGGAGGTGGCAAAGCAAGAGTTTACCATCCCAGATCACTTGATGATCCATGACTGGGCTTTCACCGACTCTCATTATATCTTATTTGCTAATCGCATCAAGCTTGATGTTGTCGGTGCAATGACTGCAGTTTGTGGGACTACTCCGATGATAACAGCATTATCAGTAAACCCTAGCAAGGACACTTCTCCCATATACCTGCTTCCTCGCTTTCCCGATAAAGGGAATCATAATCGAGATTGGAGAGTGCCTATTGAAGCTCCTTCACAGTTTTGGCTGCTACATGTATGCAATGCCTATGAGAATTTAGATGAGAATGGGAACTCCGAGATCCAAATACATGGTTCTGCTTGCTCTTACGAGTGGTTCAATTTCCAAAAGTTATTTGGATATGATTGGCAAAGTGGTAAACTAGACCCTTCGGTTATGAACATAACCGGAAGCAAGTCATTGCCTCACCTTGTTAAGGTTTCTATCAACTTGGATGCCAATGGGAACTGTCAAAGATGTGATGCGGAGCCTTTGAACGAGTGGAACAAGTCATCAGATTTTCCGGTGATCAATCCAGCATTTTCAGGCACCAAAAACAAATACATATATGCAGCAGCCTCTTCGGGTTCTCGCAGTGCATTGCCAAGCTTTCCATTCGATATGGTGGTGAAGCTCAATGCCTCGACTAAATCTGTGCACACATGGTCTGTTGGTAGTAGAAGATTTATCGGCGAACCCACTTTCATCTCCAAAGGTTCTGAAGAAGATGATGGTTACATTCTTGTAGTCGAGTATGCAGTTGCAGTTCAAAGATGCTATCTGGTCATCTTGGACTCGAAGAAAATTGGAGCAGCTGATGCGCTTGTGGCAAGACTTGAAGTCCCTAAGCACCTAAACTTTCCTCTTGGTTTTCATGGTTTTTGGGCTAGTGACGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001763 GO:0003674 GO:0003824 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008300 GO:0008610 GO:0009056 GO:0009058 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010016 GO:0010033 GO:0010223 GO:0010346 GO:0010436 GO:0010817 GO:0016042 GO:0016106 GO:0016114 GO:0016119 GO:0016121 GO:0016491 GO:0016701 GO:0016702 GO:0018130 GO:0032501 GO:0032502 GO:0042214 GO:0042221 GO:0042445 GO:0042446 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0045549 GO:0046247 GO:0046483 GO:0048367 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051213 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901334 GO:1901336 GO:1901360 GO:1901362 GO:1901575 GO:1901576 GO:1901600 GO:1901601 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00906 map00906

Pfam Domains

Protein Families

RPE65

Protein Analysis

619

Amino Acids

68.38

Weight (kDa)

5.93

Isoelectric Point (pI)

36.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPE65	PF03055	76 - 615	1.9e-89	Retinal pigment epithelial membrane protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44990 AT2G44990 AT2G44990
fragaria_vesca	FvH4_7g10450
malus_domestica	MD07G1110600.v1.1
prunus_persica	Prupe.2G133900_v2.0.a1
pyrus_communis	pycom07g09530
rosa_chinensis	RchiOBHm_Chr1g0342921 RchiOBHm_Chr1g0342931 RchiOBHm_Chr1g0348141 RchiOBHm_Chr1g0348171 RchiOBHm_Chr1g0348201 RchiOBHm_Chr2g0136091 RchiOBHm_Chr7g0229961
rosa_laevigata	RLG00000028678 RLG00000028682 RLG00000028684 RLG00000028685 RLG00000028686
rosa_multiflora	Rmu_co8414565.1_g000001 Rmu_co8499605.1_g000001 Rmu_sc0001563.1_g000031 Rmu_sc0001890.1_g000013 Rmu_sc0001890.1_g000015 Rmu_sc0002209.1_g000017 Rmu_sc0003991.1_g000009 Rmu_sc0004502.1_g000011 Rmu_sc0004502.1_g000018 Rmu_sc0005046.1_g000018
rosa_roxburghii	Rroxscaffold_4G00307110 Rroxscaffold_4G00307160 Rroxscaffold_4G00307170 Rroxscaffold_4G00307180
rosa_rugosa	Rorug01G0145700.1 Rorug01G0192700 Rorug01G0192900 Rorug01G0193500
rosa_samantha	Rh1AG095900 Rh1AG210700 Rh1AG210800 Rh1BG176200 Rh1BG176800 Rh1BG177100 Rh1BG177200 Rh1CG195000 Rh1CG195100 Rh1DG205900 Rh1DG206300 Rh1DG206600 Rh1DG206700 Rh3DG305500
rosa_wichuraiana	Rw0G011410 Rw1G017570 Rw1G017580 Rw1G017590 Rw1G017800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	73, 457
Acc36I	ACCTGC	3 cut(s)	73, 457, 1134
AccB1I	GGYRCC	1 cut(s)	1505
AccBSI	CCGCTC	1 cut(s)	97
AccI	GTMKAC	2 cut(s)	89, 183
AclWI	GGATC	6 cut(s)	37, 338, 476, 698, 967, 1252
AcoI	YGGCCR	1 cut(s)	441
AcsI	RAATTY	1 cut(s)	1231
AcuI	CTGAAG	3 cut(s)	319, 785, 1698
AcvI	CACGTG	1 cut(s)	113
AdeI	CACNNNGTG	1 cut(s)	113
AfaI	GTAC	4 cut(s)	145, 311, 449, 779
AflIII	ACRYGT	1 cut(s)	1210
AgsI	TTSAA	9 cut(s)	275, 535, 653, 791, 1184, 1297, 1453, 1727, 1796
AhdI	GACNNNNNGTC	1 cut(s)	1796
AhlI	ACTAGT	1 cut(s)	587
AjiI	CACGTC	1 cut(s)	178
AjuI	GAANNNNNNNTTGG	2 cut(s)	12, 44
AleI	CACNNNNGTG	1 cut(s)	563
AloI	GAACNNNNNNTCC	2 cut(s)	200, 232
AluBI	AGCT	9 cut(s)	399, 600, 688, 826, 1030, 1187, 1566, 1591, 1772
AluI	AGCT	9 cut(s)	399, 600, 688, 826, 1030, 1187, 1566, 1591, 1772
Alw21I	GWGCWC	4 cut(s)	75, 363, 480, 1617
Alw26I	GTCTC	5 cut(s)	232, 630, 653, 710, 799
Alw44I	GTGCAC	3 cut(s)	71, 359, 1613
AlwI	GGATC	6 cut(s)	37, 338, 476, 698, 967, 1252
Ama87I	CYCGRG	1 cut(s)	919
AoxI	GGCC	2 cut(s)	441, 518
ApaLI	GTGCAC	3 cut(s)	71, 359, 1613
ApeKI	GCWGC	5 cut(s)	752, 1204, 1529, 1532, 1769
ApoI	RAATTY	1 cut(s)	1231
AspLEI	GCGC	3 cut(s)	281, 466, 1780
AspS9I	GGNCC	2 cut(s)	323, 518
AsuC2I	CCSGG	1 cut(s)	327
AsuHPI	GGTGA	7 cut(s)	159, 499, 577, 982, 1376, 1495, 1597
AvaI	CYCGRG	1 cut(s)	919
AvaII	GGWCC	1 cut(s)	323
AxyI	CCTNAGG	1 cut(s)	386
BaeGI	GKGCMC	3 cut(s)	75, 363, 1617
BalI	TGGCCA	1 cut(s)	443
BanI	GGYRCC	1 cut(s)	1505
BbrPI	CACGTG	1 cut(s)	113
BbsI	GAAGAC	2 cut(s)	461, 879
Bbv12I	GWGCWC	4 cut(s)	75, 363, 480, 1617
BbvI	GCAGC	5 cut(s)	739, 1191, 1541, 1544, 1781
BccI	CCATC	4 cut(s)	125, 685, 962, 1682
BceAI	ACGGC	1 cut(s)	505
BcgI	CGANNNNNNTGC	2 cut(s)	1521, 1555
BciVI	GTATCC	1 cut(s)	661
BclI	TGATCA	1 cut(s)	1485
BcnI	CCSGG	1 cut(s)	327
BcoDI	GTCTC	5 cut(s)	232, 630, 653, 710, 799
BcuI	ACTAGT	1 cut(s)	587
BfaI	CTAG	5 cut(s)	173, 588, 1101, 1340, 1845
BfmI	CTRYAG	1 cut(s)	1053
BfoI	RGCGCY	1 cut(s)	282
BfuAI	ACCTGC	3 cut(s)	73, 457, 1134
BfuI	GTATCC	1 cut(s)	661
BisI	GCNGC	6 cut(s)	753, 797, 1205, 1530, 1533, 1770
BlsI	GCNGC	6 cut(s)	754, 798, 1206, 1531, 1534, 1771
Bme1390I	CCNGG	1 cut(s)	327
Bme18I	GGWCC	1 cut(s)	323
BmeRI	GACNNNNNGTC	1 cut(s)	1796
BmeT110I	CYCGRG	1 cut(s)	919
BmgBI	CACGTC	1 cut(s)	178
BmgT120I	GGNCC	2 cut(s)	323, 518
BmiI	GGNNCC	4 cut(s)	324, 519, 1446, 1507
BmrFI	CCNGG	1 cut(s)	327
BmrI	ACTGGG	1 cut(s)	991
BmsI	GCATC	5 cut(s)	1032, 1402, 1429, 1721, 1765
BmuI	ACTGGG	1 cut(s)	991
BpiI	GAAGAC	2 cut(s)	461, 879
Bpu10I	CCTNAGC	1 cut(s)	1803
BpuMI	CCSGG	1 cut(s)	327
BsaAI	YACGTR	2 cut(s)	113, 451
BsaI	GGTCTC	2 cut(s)	630, 653
BsaJI	CCNNGG	3 cut(s)	326, 346, 663
BsaWI	WCCGGW	5 cut(s)	484, 491, 655, 1364, 1480
Bse1I	ACTGG	4 cut(s)	214, 254, 724, 986
Bse21I	CCTNAGG	1 cut(s)	386
Bse3DI	GCAATG	5 cut(s)	871, 1053, 1225, 1376, 1556
BseDI	CCNNGG	3 cut(s)	326, 346, 663
BseGI	GGATG	3 cut(s)	751, 954, 1417
BseMI	GCAATG	5 cut(s)	871, 1053, 1225, 1376, 1556
BseNI	ACTGG	4 cut(s)	214, 254, 724, 986
BseSI	GKGCMC	3 cut(s)	75, 363, 1617
BseXI	GCAGC	5 cut(s)	739, 1191, 1541, 1544, 1781
BseYI	CCCAGC	1 cut(s)	600
Bsh1285I	CGRYCG	1 cut(s)	675
BshFI	GGCC	2 cut(s)	443, 520
BshNI	GGYRCC	1 cut(s)	1505
BsiEI	CGRYCG	1 cut(s)	675
BsiHKAI	GWGCWC	4 cut(s)	75, 363, 480, 1617
BsiHKCI	CYCGRG	1 cut(s)	919
BsiSI	CCGG	8 cut(s)	290, 326, 485, 492, 656, 707, 1365, 1481
BslFI	GGGAC	6 cut(s)	221, 269, 336, 431, 1078, 1784
BsmAI	GTCTC	5 cut(s)	232, 630, 653, 710, 799
BsmBI	CGTCTC	1 cut(s)	232
BsmFI	GGGAC	6 cut(s)	221, 269, 336, 431, 1078, 1784
BsmI	GAATGC	1 cut(s)	200
BsnI	GGCC	2 cut(s)	443, 520
Bso31I	GGTCTC	2 cut(s)	630, 653
BsoBI	CYCGRG	1 cut(s)	919
Bsp1286I	GDGCHC	4 cut(s)	75, 363, 480, 1617
Bsp143I	GATC	9 cut(s)	42, 330, 481, 703, 771, 961, 972, 1257, 1485
Bsp19I	CCATGG	1 cut(s)	346
BspANI	GGCC	2 cut(s)	443, 520
BspLI	GGNNCC	4 cut(s)	324, 519, 1446, 1507
BspMAI	CTGCAG	1 cut(s)	1057
BspMI	ACCTGC	3 cut(s)	73, 457, 1134
BspPI	GGATC	6 cut(s)	37, 338, 476, 698, 967, 1252
BspQI	GCTCTTC	1 cut(s)	468
BspT107I	GGYRCC	1 cut(s)	1505
BspTNI	GGTCTC	2 cut(s)	630, 653
BsrBI	CCGCTC	1 cut(s)	97
BsrDI	GCAATG	5 cut(s)	871, 1053, 1225, 1376, 1556
BsrI	ACTGG	4 cut(s)	214, 254, 724, 986
BssECI	CCNNGG	3 cut(s)	326, 346, 663
BssMI	GATC	9 cut(s)	42, 330, 481, 703, 771, 961, 972, 1257, 1485
BssT1I	CCWWGG	2 cut(s)	346, 663
Bst4CI	ACNGT	7 cut(s)	163, 358, 374, 673, 833, 1197, 1427
Bst6I	CTCTTC	3 cut(s)	227, 468, 1543
BstAPI	GCANNNNNTGC	2 cut(s)	1052, 1775
BstBAI	YACGTR	2 cut(s)	113, 451
BstC8I	GCNNGC	1 cut(s)	1279
BstDEI	CTNAG	3 cut(s)	386, 801, 1803
BstDSI	CCRYGG	1 cut(s)	346
BstEII	GGTNACC	1 cut(s)	487
BstENI	CCTNNNNNAGG	1 cut(s)	1391
BstF5I	GGATG	3 cut(s)	751, 954, 1417
BstH2I	RGCGCY	1 cut(s)	282
BstHHI	GCGC	3 cut(s)	281, 466, 1780
BstKTI	GATC	9 cut(s)	45, 333, 484, 706, 774, 964, 975, 1260, 1488
BstMAI	GTCTC	5 cut(s)	232, 630, 653, 710, 799
BstMBI	GATC	9 cut(s)	42, 330, 481, 703, 771, 961, 972, 1257, 1485
BstMCI	CGRYCG	1 cut(s)	675
BstMWI	GCNNNNNNNGC	4 cut(s)	517, 1052, 1775, 1784
BstNSI	RCATGY	2 cut(s)	880, 1214
BstPI	GGTNACC	1 cut(s)	487
BstSCI	CCNGG	1 cut(s)	325
BstSFI	CTRYAG	1 cut(s)	1053
BstSLI	GKGCMC	3 cut(s)	75, 363, 1617
BstV1I	GCAGC	5 cut(s)	739, 1191, 1541, 1544, 1781
BstV2I	GAAGAC	2 cut(s)	461, 879
BstX2I	RGATCY	2 cut(s)	330, 1257
BstXI	CCANNNNNNTGG	1 cut(s)	1268
BstYI	RGATCY	2 cut(s)	330, 1257
Bsu36I	CCTNAGG	1 cut(s)	386
BsuI	GTATCC	1 cut(s)	661
BsuRI	GGCC	2 cut(s)	443, 520
BtgI	CCRYGG	1 cut(s)	346
BtrI	CACGTC	1 cut(s)	178
BtsCI	GGATG	3 cut(s)	751, 954, 1417
BtsI	GCAGTG	1 cut(s)	1558
BtsIMutI	CAGTG	4 cut(s)	50, 261, 363, 1558
BveI	ACCTGC	3 cut(s)	73, 457, 1134
Cac8I	GCNNGC	1 cut(s)	1279
CfoI	GCGC	3 cut(s)	281, 466, 1780
Cfr13I	GGNCC	2 cut(s)	323, 518
Csp6I	GTAC	4 cut(s)	144, 310, 448, 778
CviAII	CATG	9 cut(s)	347, 377, 439, 877, 977, 1211, 1268, 1620, 1832
CviQI	GTAC	4 cut(s)	144, 310, 448, 778
DdeI	CTNAG	3 cut(s)	386, 801, 1803
DpnI	GATC	9 cut(s)	44, 332, 483, 705, 773, 963, 974, 1259, 1487
DpnII	GATC	9 cut(s)	42, 330, 481, 703, 771, 961, 972, 1257, 1485
DraIII	CACNNNGTG	1 cut(s)	113
DriI	GACNNNNNGTC	1 cut(s)	1796
EaeI	YGGCCR	1 cut(s)	441
Eam1104I	CTCTTC	3 cut(s)	227, 468, 1543
Eam1105I	GACNNNNNGTC	1 cut(s)	1796
EarI	CTCTTC	3 cut(s)	227, 468, 1543
Eco130I	CCWWGG	2 cut(s)	346, 663
Eco31I	GGTCTC	2 cut(s)	630, 653
Eco47I	GGWCC	1 cut(s)	323
Eco57I	CTGAAG	3 cut(s)	319, 785, 1698
Eco72I	CACGTG	1 cut(s)	113
Eco81I	CCTNAGG	1 cut(s)	386
Eco88I	CYCGRG	1 cut(s)	919
Eco91I	GGTNACC	1 cut(s)	487
EcoNI	CCTNNNNNAGG	1 cut(s)	1391
EcoO65I	GGTNACC	1 cut(s)	487
EcoT14I	CCWWGG	2 cut(s)	346, 663
ErhI	CCWWGG	2 cut(s)	346, 663
Esp3I	CGTCTC	1 cut(s)	232
FaeI	CATG	9 cut(s)	350, 380, 442, 880, 980, 1214, 1271, 1623, 1835
FalI	AAGNNNNNCTT	4 cut(s)	758, 790, 864, 896
FaqI	GGGAC	6 cut(s)	221, 269, 336, 431, 1078, 1784
FatI	CATG	9 cut(s)	346, 376, 438, 876, 976, 1210, 1267, 1619, 1831
FauI	CCCGC	3 cut(s)	55, 102, 294
FbaI	TGATCA	1 cut(s)	1485
FblI	GTMKAC	2 cut(s)	89, 183
Fnu4HI	GCNGC	6 cut(s)	753, 797, 1205, 1530, 1533, 1770
FokI	GGATG	3 cut(s)	758, 941, 1424
Fsp4HI	GCNGC	6 cut(s)	753, 797, 1205, 1530, 1533, 1770
FspBI	CTAG	5 cut(s)	173, 588, 1101, 1340, 1845
GlaI	GCGC	3 cut(s)	280, 465, 1779
GluI	GCNGC	6 cut(s)	753, 797, 1205, 1530, 1533, 1770
GsaI	CCCAGC	1 cut(s)	604
HaeII	RGCGCY	1 cut(s)	282
HaeIII	GGCC	2 cut(s)	443, 520
HapII	CCGG	8 cut(s)	290, 326, 485, 492, 656, 707, 1365, 1481
HhaI	GCGC	3 cut(s)	281, 466, 1780
Hin1II	CATG	9 cut(s)	350, 380, 442, 880, 980, 1214, 1271, 1623, 1835
Hin6I	GCGC	3 cut(s)	279, 464, 1778
HinP1I	GCGC	3 cut(s)	279, 464, 1778
HincII	GTYRAC	2 cut(s)	90, 184
HindII	GTYRAC	2 cut(s)	90, 184
HindIII	AAGCTT	2 cut(s)	1028, 1564
HinfI	GANTC	5 cut(s)	188, 917, 995, 1153, 1751
HpaII	CCGG	8 cut(s)	290, 326, 485, 492, 656, 707, 1365, 1481
HphI	GGTGA	7 cut(s)	159, 499, 577, 982, 1376, 1495, 1597
Hpy166II	GTNNAC	9 cut(s)	73, 90, 184, 361, 507, 951, 1096, 1337, 1615
Hpy188I	TCNGA	6 cut(s)	241, 266, 1074, 1255, 1474, 1678
Hpy188III	TCNNGA	4 cut(s)	303, 676, 1142, 1163
Hpy8I	GTNNAC	9 cut(s)	73, 90, 184, 361, 507, 951, 1096, 1337, 1615
Hpy99I	CGWCG	3 cut(s)	91, 188, 344
HpyCH4III	ACNGT	7 cut(s)	163, 358, 374, 673, 833, 1197, 1427
HpyCH4IV	ACGT	6 cut(s)	112, 177, 308, 450, 497, 576
HpyF10VI	GCNNNNNNNGC	4 cut(s)	517, 1052, 1775, 1784
HpyF3I	CTNAG	3 cut(s)	386, 801, 1803
HpySE526I	ACGT	6 cut(s)	112, 177, 308, 450, 497, 576
Hsp92II	CATG	9 cut(s)	350, 380, 442, 880, 980, 1214, 1271, 1623, 1835
HspAI	GCGC	3 cut(s)	279, 464, 1778
Ksp22I	TGATCA	1 cut(s)	1485
Kzo9I	GATC	9 cut(s)	42, 330, 481, 703, 771, 961, 972, 1257, 1485
LguI	GCTCTTC	1 cut(s)	468
LmnI	GCTCC	5 cut(s)	102, 242, 1192, 1444, 1766
Lsp1109I	GCAGC	5 cut(s)	739, 1191, 1541, 1544, 1781
LweI	GCATC	5 cut(s)	1032, 1402, 1429, 1721, 1765
MaeI	CTAG	5 cut(s)	173, 588, 1101, 1340, 1845
MaeII	ACGT	6 cut(s)	112, 177, 308, 450, 497, 576
MaeIII	GTNAC	5 cut(s)	193, 256, 487, 1691, 1847
MalI	GATC	9 cut(s)	44, 332, 483, 705, 773, 963, 974, 1259, 1487
MbiI	CCGCTC	1 cut(s)	97
MboI	GATC	9 cut(s)	42, 330, 481, 703, 771, 961, 972, 1257, 1485
MflI	RGATCY	2 cut(s)	330, 1257
MhlI	GDGCHC	4 cut(s)	75, 363, 480, 1617
MlsI	TGGCCA	1 cut(s)	443
MluCI	AATT	3 cut(s)	1231, 1297, 1761
MluNI	TGGCCA	1 cut(s)	443
MlyI	GAGTC	4 cut(s)	182, 911, 989, 1745
Mox20I	TGGCCA	1 cut(s)	443
MscI	TGGCCA	1 cut(s)	443
MseI	TTAA	3 cut(s)	102, 927, 1392
MslI	CAYNNNNRTG	1 cut(s)	563
Msp20I	TGGCCA	1 cut(s)	443
MspA1I	CMGCKG	1 cut(s)	1772
MspI	CCGG	8 cut(s)	290, 326, 485, 492, 656, 707, 1365, 1481
MspR9I	CCNGG	1 cut(s)	327
Mva1269I	GAATGC	1 cut(s)	200
MwoI	GCNNNNNNNGC	4 cut(s)	517, 1052, 1775, 1784
NciI	CCSGG	1 cut(s)	327
NcoI	CCATGG	1 cut(s)	346
NdeII	GATC	9 cut(s)	42, 330, 481, 703, 771, 961, 972, 1257, 1485
NlaIII	CATG	9 cut(s)	350, 380, 442, 880, 980, 1214, 1271, 1623, 1835
NlaIV	GGNNCC	4 cut(s)	324, 519, 1446, 1507
NmuCI	GTSAC	3 cut(s)	256, 487, 1847
NspI	RCATGY	2 cut(s)	880, 1214
OliI	CACNNNNGTG	1 cut(s)	563
PaeR7I	CTCGAG	1 cut(s)	919
PaqCI	CACCTGC	2 cut(s)	73, 457
PciI	ACATGT	1 cut(s)	1210
PciSI	GCTCTTC	1 cut(s)	468
PcsI	WCGNNNNNNNCGW	2 cut(s)	183, 189
PctI	GAATGC	1 cut(s)	200
PfeI	GAWTC	1 cut(s)	1153
PflFI	GACNNNGTC	2 cut(s)	179, 422
PkrI	GCNGC	6 cut(s)	754, 798, 1206, 1531, 1534, 1771
PleI	GAGTC	4 cut(s)	182, 911, 989, 1745
PmaCI	CACGTG	1 cut(s)	113
PmlI	CACGTG	1 cut(s)	113
PpsI	GAGTC	4 cut(s)	182, 911, 989, 1745
Ppu21I	YACGTR	2 cut(s)	113, 451
PscI	ACATGT	1 cut(s)	1210
PspCI	CACGTG	1 cut(s)	113
PspEI	GGTNACC	1 cut(s)	487
PspFI	CCCAGC	1 cut(s)	600
PspN4I	GGNNCC	4 cut(s)	324, 519, 1446, 1507
PspPI	GGNCC	2 cut(s)	323, 518
PspXI	VCTCGAGB	1 cut(s)	919
PstI	CTGCAG	1 cut(s)	1057
PsuI	RGATCY	2 cut(s)	330, 1257
PsyI	GACNNNGTC	2 cut(s)	179, 422
PvuII	CAGCTG	1 cut(s)	1772
RsaI	GTAC	4 cut(s)	145, 311, 449, 779
RsaNI	GTAC	4 cut(s)	144, 310, 448, 778
RseI	CAYNNNNRTG	1 cut(s)	563
SalI	GTCGAC	2 cut(s)	88, 182
SapI	GCTCTTC	1 cut(s)	468
SaqAI	TTAA	3 cut(s)	102, 927, 1392
SatI	GCNGC	6 cut(s)	753, 797, 1205, 1530, 1533, 1770
Sau3AI	GATC	9 cut(s)	42, 330, 481, 703, 771, 961, 972, 1257, 1485
Sau96I	GGNCC	2 cut(s)	323, 518
SchI	GAGTC	4 cut(s)	182, 911, 989, 1745
ScrFI	CCNGG	1 cut(s)	327
SduI	GDGCHC	4 cut(s)	75, 363, 480, 1617
SfaNI	GCATC	5 cut(s)	1032, 1402, 1429, 1721, 1765
SfcI	CTRYAG	1 cut(s)	1053
Sfr274I	CTCGAG	1 cut(s)	919
SinI	GGWCC	1 cut(s)	323
SlaI	CTCGAG	1 cut(s)	919
SmiMI	CAYNNNNRTG	1 cut(s)	563
SmlI	CTYRAG	1 cut(s)	919
SmoI	CTYRAG	1 cut(s)	919
SpeI	ACTAGT	1 cut(s)	587
Sse9I	AATT	3 cut(s)	1231, 1297, 1761
SspMI	CTAG	5 cut(s)	173, 588, 1101, 1340, 1845
StyD4I	CCNGG	1 cut(s)	325
StyI	CCWWGG	2 cut(s)	346, 663
TaaI	ACNGT	7 cut(s)	163, 358, 374, 673, 833, 1197, 1427
TaiI	ACGT	6 cut(s)	115, 180, 311, 453, 500, 579
TasI	AATT	3 cut(s)	1231, 1297, 1761
TauI	GCSGC	1 cut(s)	799
TfiI	GAWTC	1 cut(s)	1153
Tru1I	TTAA	3 cut(s)	102, 927, 1392
Tru9I	TTAA	3 cut(s)	102, 927, 1392
TscAI	CASTG	4 cut(s)	57, 261, 363, 1558
TseFI	GTSAC	3 cut(s)	256, 487, 1847
TseI	GCWGC	5 cut(s)	752, 1204, 1529, 1532, 1769
Tsp45I	GTSAC	3 cut(s)	256, 487, 1847
TspDTI	ATGAA	6 cut(s)	427, 584, 924, 1370, 1651, 1820
TspGWI	ACGGA	4 cut(s)	153, 181, 473, 795
TspRI	CASTG	4 cut(s)	57, 261, 363, 1558
Tth111I	GACNNNGTC	2 cut(s)	179, 422
VneI	GTGCAC	3 cut(s)	71, 359, 1613
VpaK11BI	GGWCC	1 cut(s)	323
XagI	CCTNNNNNAGG	1 cut(s)	1391
XapI	RAATTY	1 cut(s)	1231
XceI	RCATGY	2 cut(s)	880, 1214
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1310
XhoI	CTCGAG	1 cut(s)	919
XmiI	GTMKAC	2 cut(s)	89, 183
XspI	CTAG	5 cut(s)	173, 588, 1101, 1340, 1845

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.