Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005046.1

Orthogroup ID

OG0001225

Physical Location & Seq

Genomic Coordinates Forward (+)

118349 .. 119146

Gene Structure 798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005046.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

atgcaagccaatcccttccaattcactgccaaatcaatattcccgtcacggataaacatacctacggtgcgccaacagcaccgttcgccttctttgcctcccctcaaaccgccatgtgccatctccgcttctactcccaatgacgccgagagttctactccaactaccatgtcaaccctagaagttgtcgatgactccgtggctgcgttccgggactaccagtttctctttgtctcgcaacgctcggaaacaaacgagccagtgactctacaagttgttgaaggtgcagtcccgccagattttccttccggaacatattacttgacggggccggggctcttcagagacgaccatggctcgacggtgcaccctttggatggtcacggctaccttagggctttcactttccatggggtcagtgggaaagaggtcaatgtcatgttcatggccaagtatgtgaaaactgaggcgcagttggaagagcacgaccccgtgaccggtacgtggcggttcacgcataggggagcgttctcggtgttgaagggaggacagaaagtcgggaacactaaggtgatcaaaaacgtggcgaatactagtgtgttgagctggggtgggaggctgatgtgcttgtgggaaggtgatggggaaccttacgaaattgaaaaggagaccttggaaactgtcgggaaggtcaagctcatggaaggttgcgatccggtggtggagagtgggagtgatggccgtggtgtttgggatgttgctgcaagattgttgaagccaattttgtatggtatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001763 GO:0003674 GO:0003824 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008300 GO:0008610 GO:0009056 GO:0009058 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010016 GO:0010033 GO:0010223 GO:0010346 GO:0010436 GO:0010817 GO:0016042 GO:0016106 GO:0016114 GO:0016119 GO:0016121 GO:0016491 GO:0016701 GO:0016702 GO:0018130 GO:0032501 GO:0032502 GO:0042214 GO:0042221 GO:0042445 GO:0042446 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0045549 GO:0046247 GO:0046483 GO:0048367 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051213 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901334 GO:1901336 GO:1901360 GO:1901362 GO:1901575 GO:1901576 GO:1901600 GO:1901601 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00906 map00906

Pfam Domains

Protein Families

RPE65

Protein Analysis

265

Amino Acids

29.07

Weight (kDa)

5.82

Isoelectric Point (pI)

31.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44990 AT2G44990 AT2G44990
fragaria_vesca	FvH4_7g10450
malus_domestica	MD07G1110600.v1.1
prunus_persica	Prupe.2G133900_v2.0.a1
pyrus_communis	pycom07g09530
rosa_chinensis	RchiOBHm_Chr1g0342921 RchiOBHm_Chr1g0342931 RchiOBHm_Chr1g0348141 RchiOBHm_Chr1g0348171 RchiOBHm_Chr1g0348201 RchiOBHm_Chr2g0136091 RchiOBHm_Chr7g0229961
rosa_laevigata	RLG00000028678 RLG00000028682 RLG00000028684 RLG00000028685 RLG00000028686
rosa_multiflora	Rmu_co8414565.1_g000001 Rmu_co8499605.1_g000001 Rmu_sc0001563.1_g000031 Rmu_sc0001890.1_g000013 Rmu_sc0001890.1_g000015 Rmu_sc0002209.1_g000017 Rmu_sc0003991.1_g000009 Rmu_sc0004502.1_g000011 Rmu_sc0004502.1_g000018 Rmu_sc0005046.1_g000018
rosa_roxburghii	Rroxscaffold_4G00307110 Rroxscaffold_4G00307160 Rroxscaffold_4G00307170 Rroxscaffold_4G00307180
rosa_rugosa	Rorug01G0145700.1 Rorug01G0192700 Rorug01G0192900 Rorug01G0193500
rosa_samantha	Rh1AG095900 Rh1AG210700 Rh1AG210800 Rh1BG176200 Rh1BG176800 Rh1BG177100 Rh1BG177200 Rh1CG195000 Rh1CG195100 Rh1DG205900 Rh1DG206300 Rh1DG206600 Rh1DG206700 Rh3DG305500
rosa_wichuraiana	Rw0G011410 Rw1G017570 Rw1G017580 Rw1G017590 Rw1G017800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	308
AciI	CCGC	4 cut(s)	110, 126, 293, 508
AclWI	GGATC	1 cut(s)	707
AcoI	YGGCCR	2 cut(s)	447, 739
AcuI	CTGAAG	1 cut(s)	325
AcyI	GRCGYC	1 cut(s)	144
AfaI	GTAC	1 cut(s)	502
AfiI	CCNNNNNNNGG	3 cut(s)	377, 497, 504
AgeI	ACCGGT	1 cut(s)	497
AgsI	TTSAA	4 cut(s)	281, 541, 662, 775
AhdI	GACNNNNNGTC	1 cut(s)	554
AhlI	ACTAGT	1 cut(s)	593
AjuI	GAANNNNNNNTTGG	2 cut(s)	23, 55
AleI	CACNNNNGTG	1 cut(s)	569
AluBI	AGCT	2 cut(s)	606, 697
AluI	AGCT	2 cut(s)	606, 697
Alw21I	GWGCWC	2 cut(s)	369, 486
Alw26I	GTCTC	3 cut(s)	238, 339, 662
Alw44I	GTGCAC	1 cut(s)	365
AlwI	GGATC	1 cut(s)	707
Aor13HI	TCCGGA	1 cut(s)	308
AoxI	GGCC	3 cut(s)	329, 447, 739
ApaLI	GTGCAC	1 cut(s)	365
ApeKI	GCWGC	2 cut(s)	203, 761
AsiGI	ACCGGT	1 cut(s)	497
AspLEI	GCGC	2 cut(s)	72, 472
AspS9I	GGNCC	1 cut(s)	329
AsuC2I	CCSGG	2 cut(s)	212, 333
AsuHPI	GGTGA	2 cut(s)	583, 650
AxyI	CCTNAGG	1 cut(s)	392
BaeGI	GKGCMC	1 cut(s)	369
BalI	TGGCCA	1 cut(s)	449
BanII	GRGCYC	1 cut(s)	339
Bbv12I	GWGCWC	2 cut(s)	369, 486
BbvI	GCAGC	2 cut(s)	190, 748
BccI	CCATC	4 cut(s)	128, 371, 635, 731
BceAI	ACGGC	2 cut(s)	400, 726
BclI	TGATCA	1 cut(s)	573
BcnI	CCSGG	2 cut(s)	212, 333
BcoDI	GTCTC	3 cut(s)	238, 339, 662
BcuI	ACTAGT	1 cut(s)	593
BfaI	CTAG	2 cut(s)	179, 594
BisI	GCNGC	2 cut(s)	204, 762
BlsI	GCNGC	2 cut(s)	205, 763
Bme1390I	CCNGG	2 cut(s)	212, 333
BmeRI	GACNNNNNGTC	1 cut(s)	554
BmgT120I	GGNCC	1 cut(s)	329
BmiI	GGNNCC	2 cut(s)	330, 648
BmrFI	CCNGG	2 cut(s)	212, 333
BplI	GAGNNNNNCTC	2 cut(s)	142, 174
BpuMI	CCSGG	2 cut(s)	212, 333
BsaAI	YACGTR	1 cut(s)	504
BsaHI	GRCGYC	1 cut(s)	144
BsaI	GGTCTC	1 cut(s)	662
BsaJI	CCNNGG	6 cut(s)	198, 332, 352, 409, 672, 742
BsaWI	WCCGGW	3 cut(s)	308, 497, 715
Bsc4I	CCNNNNNNNGG	3 cut(s)	377, 497, 504
Bse118I	RCCGGY	1 cut(s)	497
Bse1I	ACTGG	2 cut(s)	220, 260
Bse21I	CCTNAGG	1 cut(s)	392
BseAI	TCCGGA	1 cut(s)	308
BseDI	CCNNGG	6 cut(s)	198, 332, 352, 409, 672, 742
BseGI	GGATG	2 cut(s)	382, 760
BseLI	CCNNNNNNNGG	3 cut(s)	377, 497, 504
BseMII	CTCAG	1 cut(s)	456
BseNI	ACTGG	2 cut(s)	220, 260
BseSI	GKGCMC	1 cut(s)	369
BseXI	GCAGC	2 cut(s)	190, 748
BseYI	CCCAGC	1 cut(s)	606
BsgI	GTGCAG	1 cut(s)	306
BshFI	GGCC	3 cut(s)	331, 449, 741
BshTI	ACCGGT	1 cut(s)	497
BsiHKAI	GWGCWC	2 cut(s)	369, 486
BsiSI	CCGG	5 cut(s)	211, 309, 332, 498, 716
BslFI	GGGAC	2 cut(s)	227, 275
BslI	CCNNNNNNNGG	3 cut(s)	377, 497, 504
BsmAI	GTCTC	3 cut(s)	238, 339, 662
BsmBI	CGTCTC	1 cut(s)	339
BsmFI	GGGAC	2 cut(s)	227, 275
BsnI	GGCC	3 cut(s)	331, 449, 741
Bso31I	GGTCTC	1 cut(s)	662
Bsp1286I	GDGCHC	3 cut(s)	339, 369, 486
Bsp13I	TCCGGA	1 cut(s)	308
Bsp143I	GATC	2 cut(s)	573, 712
Bsp19I	CCATGG	2 cut(s)	352, 409
BspACI	CCGC	4 cut(s)	110, 126, 293, 508
BspANI	GGCC	3 cut(s)	331, 449, 741
BspCNI	CTCAG	1 cut(s)	457
BspEI	TCCGGA	1 cut(s)	308
BspLI	GGNNCC	2 cut(s)	330, 648
BspPI	GGATC	1 cut(s)	707
BspQI	GCTCTTC	2 cut(s)	344, 474
BspTNI	GGTCTC	1 cut(s)	662
BsrFI	RCCGGY	1 cut(s)	497
BsrI	ACTGG	2 cut(s)	220, 260
BssAI	RCCGGY	1 cut(s)	497
BssECI	CCNNGG	6 cut(s)	198, 332, 352, 409, 672, 742
BssMI	GATC	2 cut(s)	573, 712
BssNI	GRCGYC	1 cut(s)	144
BssT1I	CCWWGG	3 cut(s)	352, 409, 672
Bst4CI	ACNGT	4 cut(s)	67, 83, 364, 682
Bst6I	CTCTTC	2 cut(s)	344, 474
BstACI	GRCGYC	1 cut(s)	144
BstBAI	YACGTR	1 cut(s)	504
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	3 cut(s)	392, 465, 567
BstDSI	CCRYGG	4 cut(s)	198, 352, 409, 742
BstF5I	GGATG	2 cut(s)	382, 760
BstHHI	GCGC	2 cut(s)	72, 472
BstKTI	GATC	2 cut(s)	576, 715
BstMAI	GTCTC	3 cut(s)	238, 339, 662
BstMBI	GATC	2 cut(s)	573, 712
BstMWI	GCNNNNNNNGC	5 cut(s)	76, 85, 94, 125, 514
BstSCI	CCNGG	2 cut(s)	210, 331
BstSLI	GKGCMC	1 cut(s)	369
BstV1I	GCAGC	2 cut(s)	190, 748
Bsu36I	CCTNAGG	1 cut(s)	392
BsuRI	GGCC	3 cut(s)	331, 449, 741
BtgI	CCRYGG	4 cut(s)	198, 352, 409, 742
BtsCI	GGATG	2 cut(s)	382, 760
BtsI	GCAGTG	1 cut(s)	24
BtsIMutI	CAGTG	3 cut(s)	24, 267, 424
Cac8I	GCNNGC	1 cut(s)	6
CfoI	GCGC	2 cut(s)	72, 472
Cfr10I	RCCGGY	1 cut(s)	497
Cfr13I	GGNCC	1 cut(s)	329
CseI	GACGC	1 cut(s)	152
Csp6I	GTAC	1 cut(s)	501
CspAI	ACCGGT	1 cut(s)	497
CviAII	CATG	7 cut(s)	114, 169, 353, 410, 439, 445, 700
CviQI	GTAC	1 cut(s)	501
DdeI	CTNAG	3 cut(s)	392, 465, 567
DpnI	GATC	2 cut(s)	575, 714
DpnII	GATC	2 cut(s)	573, 712
DriI	GACNNNNNGTC	1 cut(s)	554
EaeI	YGGCCR	2 cut(s)	447, 739
Eam1104I	CTCTTC	2 cut(s)	344, 474
Eam1105I	GACNNNNNGTC	1 cut(s)	554
EarI	CTCTTC	2 cut(s)	344, 474
Eco130I	CCWWGG	3 cut(s)	352, 409, 672
Eco24I	GRGCYC	1 cut(s)	339
Eco31I	GGTCTC	1 cut(s)	662
Eco57I	CTGAAG	1 cut(s)	325
Eco81I	CCTNAGG	1 cut(s)	392
EcoT14I	CCWWGG	3 cut(s)	352, 409, 672
EcoT38I	GRGCYC	1 cut(s)	339
ErhI	CCWWGG	3 cut(s)	352, 409, 672
Esp3I	CGTCTC	1 cut(s)	339
FaeI	CATG	7 cut(s)	117, 172, 356, 413, 442, 448, 703
FalI	AAGNNNNNCTT	2 cut(s)	656, 688
FaqI	GGGAC	2 cut(s)	227, 275
FatI	CATG	7 cut(s)	113, 168, 352, 409, 438, 444, 699
FauI	CCCGC	1 cut(s)	300
FbaI	TGATCA	1 cut(s)	573
Fnu4HI	GCNGC	2 cut(s)	204, 762
FokI	GGATG	2 cut(s)	389, 767
FriOI	GRGCYC	1 cut(s)	339
Fsp4HI	GCNGC	2 cut(s)	204, 762
FspBI	CTAG	2 cut(s)	179, 594
GlaI	GCGC	2 cut(s)	71, 471
GluI	GCNGC	2 cut(s)	204, 762
GsaI	CCCAGC	1 cut(s)	610
HaeIII	GGCC	3 cut(s)	331, 449, 741
HapII	CCGG	5 cut(s)	211, 309, 332, 498, 716
HgaI	GACGC	1 cut(s)	152
HhaI	GCGC	2 cut(s)	72, 472
Hin1I	GRCGYC	1 cut(s)	144
Hin1II	CATG	7 cut(s)	117, 172, 356, 413, 442, 448, 703
Hin6I	GCGC	2 cut(s)	70, 470
HinP1I	GCGC	2 cut(s)	70, 470
HincII	GTYRAC	1 cut(s)	174
HindII	GTYRAC	1 cut(s)	174
HinfI	GANTC	2 cut(s)	194, 265
HpaII	CCGG	5 cut(s)	211, 309, 332, 498, 716
HphI	GGTGA	2 cut(s)	583, 650
Hpy166II	GTNNAC	3 cut(s)	174, 367, 513
Hpy188I	TCNGA	2 cut(s)	247, 344
Hpy188III	TCNNGA	3 cut(s)	309, 559, 685
Hpy8I	GTNNAC	3 cut(s)	174, 367, 513
Hpy99I	CGWCG	1 cut(s)	364
HpyAV	CCTTC	8 cut(s)	25, 99, 275, 315, 535, 629, 682, 698
HpyCH4III	ACNGT	4 cut(s)	67, 83, 364, 682
HpyCH4IV	ACGT	2 cut(s)	503, 582
HpyCH4V	TGCA	4 cut(s)	4, 287, 367, 764
HpyF10VI	GCNNNNNNNGC	5 cut(s)	76, 85, 94, 125, 514
HpyF3I	CTNAG	3 cut(s)	392, 465, 567
HpySE526I	ACGT	2 cut(s)	503, 582
Hsp92I	GRCGYC	1 cut(s)	144
Hsp92II	CATG	7 cut(s)	117, 172, 356, 413, 442, 448, 703
HspAI	GCGC	2 cut(s)	70, 470
Kpn2I	TCCGGA	1 cut(s)	308
Ksp22I	TGATCA	1 cut(s)	573
Kzo9I	GATC	2 cut(s)	573, 712
LguI	GCTCTTC	2 cut(s)	344, 474
LmnI	GCTCC	1 cut(s)	524
LpnPI	CCDG	9 cut(s)	224, 233, 273, 309, 322, 345, 511, 592, 729
Lsp1109I	GCAGC	2 cut(s)	190, 748
MaeI	CTAG	2 cut(s)	179, 594
MaeII	ACGT	2 cut(s)	503, 582
MaeIII	GTNAC	4 cut(s)	45, 262, 380, 493
MalI	GATC	2 cut(s)	575, 714
MboI	GATC	2 cut(s)	573, 712
MboII	GAAGA	2 cut(s)	331, 491
MhlI	GDGCHC	3 cut(s)	339, 369, 486
MlsI	TGGCCA	1 cut(s)	449
MluCI	AATT	3 cut(s)	20, 657, 780
MluNI	TGGCCA	1 cut(s)	449
MlyI	GAGTC	2 cut(s)	188, 259
MmeI	TCCRAC	2 cut(s)	185, 456
MnlI	CCTC	6 cut(s)	108, 113, 421, 460, 539, 609
Mox20I	TGGCCA	1 cut(s)	449
MroI	TCCGGA	1 cut(s)	308
MscI	TGGCCA	1 cut(s)	449
MslI	CAYNNNNRTG	2 cut(s)	443, 569
Msp20I	TGGCCA	1 cut(s)	449
MspI	CCGG	5 cut(s)	211, 309, 332, 498, 716
MspR9I	CCNGG	2 cut(s)	212, 333
MwoI	GCNNNNNNNGC	5 cut(s)	76, 85, 94, 125, 514
NciI	CCSGG	2 cut(s)	212, 333
NcoI	CCATGG	2 cut(s)	352, 409
NdeII	GATC	2 cut(s)	573, 712
NlaIII	CATG	7 cut(s)	117, 172, 356, 413, 442, 448, 703
NlaIV	GGNNCC	2 cut(s)	330, 648
NmeAIII	GCCGAG	1 cut(s)	172
NmuCI	GTSAC	4 cut(s)	45, 262, 380, 493
OliI	CACNNNNGTG	1 cut(s)	569
PciSI	GCTCTTC	2 cut(s)	344, 474
PcsI	WCGNNNNNNNCGW	1 cut(s)	195
PfoI	TCCNGGA	1 cut(s)	210
PinAI	ACCGGT	1 cut(s)	497
PkrI	GCNGC	2 cut(s)	205, 763
PleI	GAGTC	2 cut(s)	188, 259
PpsI	GAGTC	2 cut(s)	188, 259
Ppu21I	YACGTR	1 cut(s)	504
PspFI	CCCAGC	1 cut(s)	606
PspN4I	GGNNCC	2 cut(s)	330, 648
PspPI	GGNCC	1 cut(s)	329
RsaI	GTAC	1 cut(s)	502
RsaNI	GTAC	1 cut(s)	501
RseI	CAYNNNNRTG	2 cut(s)	443, 569
SapI	GCTCTTC	2 cut(s)	344, 474
SatI	GCNGC	2 cut(s)	204, 762
Sau3AI	GATC	2 cut(s)	573, 712
Sau96I	GGNCC	1 cut(s)	329
SchI	GAGTC	2 cut(s)	188, 259
ScrFI	CCNGG	2 cut(s)	212, 333
SduI	GDGCHC	3 cut(s)	339, 369, 486
SmiMI	CAYNNNNRTG	2 cut(s)	443, 569
SpeI	ACTAGT	1 cut(s)	593
Sse9I	AATT	3 cut(s)	20, 657, 780
SsiI	CCGC	4 cut(s)	110, 126, 293, 508
SspI	AATATT	1 cut(s)	39
SspMI	CTAG	2 cut(s)	179, 594
StyD4I	CCNGG	2 cut(s)	210, 331
StyI	CCWWGG	3 cut(s)	352, 409, 672
TaaI	ACNGT	4 cut(s)	67, 83, 364, 682
TaiI	ACGT	2 cut(s)	506, 585
TaqI	TCGA	2 cut(s)	189, 359
TasI	AATT	3 cut(s)	20, 657, 780
TscAI	CASTG	3 cut(s)	31, 267, 424
TseFI	GTSAC	4 cut(s)	45, 262, 380, 493
TseI	GCWGC	2 cut(s)	203, 761
Tsp45I	GTSAC	4 cut(s)	45, 262, 380, 493
TspDTI	ATGAA	1 cut(s)	433
TspGWI	ACGGA	2 cut(s)	64, 187
TspRI	CASTG	3 cut(s)	31, 267, 424
VneI	GTGCAC	1 cut(s)	365
XcmI	CCANNNNNNNNNTGG	1 cut(s)	416
XspI	CTAG	2 cut(s)	179, 594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.