Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001225

Physical Location & Seq

Genomic Coordinates Forward (+)

40087540 .. 40342316

Gene Structure 254777 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG210800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1872 bp

ATGCAAGCCAATCCCTTCCAATTCACTGCCAAATCAATATTCCCGTCACGGATAAACATACCTACGGTGCGCCAACAGCACCGTTCGCCTTCTTTGCCTCCCCTCAAACCGCCATGTGCCATCTCCGCTTCTACTCCCAATGACGCCGAGAGTTCTACTCCAACTACCATGTCAACCCTAGAAGTTGTCGATGACTCCGTGGCTGCGTTCCGGGACTACCAGTTTCTCTTTGTCTCGCAACGCTCGGAAACAAACGAGCCAGTGACTCTACAAGTTGTTGAAGGTGCAGTCCCGCCAGATTTTCCTTCCGGAACATATTACTTGACGGGGCCGGGGCTCTTCAGAGACGACCATGGCTCGACGGTGCACCCTTTGGATGCTCACGGCTACCTTAGGGCTTTCACTTTCCATGGGGTCAGTGGGAAAGAGGTCAATGTCATGTTCATGGCCAAGTATGTGAAAACTGAGGCGCAGTTGGAAGAGCACGACCCCGTGACCGGTACGTGGCGGTTCACGCATAGGGGAGCGTTCTCGGTGTTGAAGGGAGGACAGAAAGTCGGGAACACTAAGGTGATCAAAAACGTGGCGAATACTTGTGTGTTGAGCTGGGGTGGGAGGCTGATGTGCTTGTGGGAAGGTGATGGGGAACCTTACGAAATTGAAAAGGAGACCTTGGAAACTGTCGGGAAGGTCAAGCTCATGGAAGGTTGCGATCCGGTGGTGGAGAGTGGGAGTGATGGCCGTGGTGTTTGGGATGTTGCTGCAAGATTGTTGAAGCCAATTTTGTATGGAGTGTTTAAGAAGTCACGAAAGCGACTGTTAGCTCATTACAAGCTCGACACTCACAAAGATAGACTTCTTATGATGTCAAGTAATAAAGAAGATATACTGTTGCCACACAATACTTTTACATTTTATGAATTTGATTCAAATTTTAAGGAGGTGGGAAAGAAAGAGTTCATCATCCCAGACCACTTGTACATTCATGATTGGGCTTTCACAGCCACTTATTATATACTATTTGCTAACCGCGTTAAACTTAATGCTTCTGGTGCAATGACTTCAGTTTGTGGAATCACTCCAACGATGACAGCATTATCTGTGAATCCTACCAAGGACACATCTCCAATATATTTGCTTCCTAGGTTTCCTAATGATCTGAATGGTAGTCGAGATTGGAGAGTACCTATTGAAGCTCCTTCACGATTTTGGCTGCAACATGTAGGCAATGCCTATGATTATTTGGATGAAAATGGGAATTCGGAGATCCAGATACATGCTTCTGTCTGCTCTTACGAGTGGTTCACTTTGCAAAAGTTGTTTGGATATGATTGGCGAAGTGGTAAACTCGACCCTTCGATTATGAACTTGGGTAGAAACCACAGCAGAACATTGCCTCACCTTGTTCAGGTTTCCATCAACTTGGATGTCCATGGGATTTGTCAAAGATGTGATGTGGAGCCTTTGAACGAGTGGAACAAGTCATCAGATTTTCCTGCTATCAATCCAGCTTTTTCAGGCCGCAAAAATAATTACGTATATGCACCAAGTACTTCAGGTTCTCGTAGTGAATTGCCAAACTTTCCATTTGACATGGTGGCAAAGCTCAATCTTTCCACTAAATCTGTGGACACATGGTCTGCTGGTAGTAGAAGATTTGTCGGCGAACCCACATTTGTTGCTAAAGGTTCTGAAGAAGATGATGGTTACATTGTAGTAGTCGAGTATGCAGCTGTAGTTCAAAGGTGCTATCTGGTTATCTTGGATTCAAAAAAGATTGGAGCGGCTGACGCACTTGTGGCAAGACTTGAAGTCCCTAAGGACCTAAATTTTCCTTTTGGTTTTCATGGATGCTGGGCCAACAACGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001763 GO:0003674 GO:0003824 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008300 GO:0008610 GO:0009056 GO:0009058 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010016 GO:0010033 GO:0010223 GO:0010346 GO:0010436 GO:0010817 GO:0016042 GO:0016106 GO:0016114 GO:0016119 GO:0016121 GO:0016491 GO:0016701 GO:0016702 GO:0018130 GO:0032501 GO:0032502 GO:0042214 GO:0042221 GO:0042445 GO:0042446 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0045549 GO:0046247 GO:0046483 GO:0048367 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051213 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901334 GO:1901336 GO:1901360 GO:1901362 GO:1901575 GO:1901576 GO:1901600 GO:1901601 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00906 map00906

Pfam Domains

Protein Families

RPE65

Protein Analysis

623

Amino Acids

69.77

Weight (kDa)

6.33

Isoelectric Point (pI)

36.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPE65	PF03055	78 - 620	8.5e-86	Retinal pigment epithelial membrane protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44990 AT2G44990 AT2G44990
fragaria_vesca	FvH4_7g10450
malus_domestica	MD07G1110600.v1.1
prunus_persica	Prupe.2G133900_v2.0.a1
pyrus_communis	pycom07g09530
rosa_chinensis	RchiOBHm_Chr1g0342921 RchiOBHm_Chr1g0342931 RchiOBHm_Chr1g0348141 RchiOBHm_Chr1g0348171 RchiOBHm_Chr1g0348201 RchiOBHm_Chr2g0136091 RchiOBHm_Chr7g0229961
rosa_laevigata	RLG00000028678 RLG00000028682 RLG00000028684 RLG00000028685 RLG00000028686
rosa_multiflora	Rmu_co8414565.1_g000001 Rmu_co8499605.1_g000001 Rmu_sc0001563.1_g000031 Rmu_sc0001890.1_g000013 Rmu_sc0001890.1_g000015 Rmu_sc0002209.1_g000017 Rmu_sc0003991.1_g000009 Rmu_sc0004502.1_g000011 Rmu_sc0004502.1_g000018 Rmu_sc0005046.1_g000018
rosa_roxburghii	Rroxscaffold_4G00307110 Rroxscaffold_4G00307160 Rroxscaffold_4G00307170 Rroxscaffold_4G00307180
rosa_rugosa	Rorug01G0145700.1 Rorug01G0192700 Rorug01G0192900 Rorug01G0193500
rosa_samantha	Rh1AG095900 Rh1AG210700 Rh1AG210800 Rh1BG176200 Rh1BG176800 Rh1BG177100 Rh1BG177200 Rh1CG195000 Rh1CG195100 Rh1DG205900 Rh1DG206300 Rh1DG206600 Rh1DG206700 Rh3DG305500
rosa_wichuraiana	Rw0G011410 Rw1G017570 Rw1G017580 Rw1G017590 Rw1G017800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1784
AccII	CGCG	1 cut(s)	1032
AccIII	TCCGGA	1 cut(s)	308
AciI	CCGC	7 cut(s)	110, 126, 293, 508, 1030, 1522, 1784
AclWI	GGATC	2 cut(s)	707, 1261
AcoI	YGGCCR	2 cut(s)	447, 739
AcsI	RAATTY	4 cut(s)	920, 931, 1258, 1828
AcuI	CTGAAG	4 cut(s)	325, 1047, 1539, 1713
AcyI	GRCGYC	1 cut(s)	144
AfaI	GTAC	4 cut(s)	502, 980, 1185, 1552
AfiI	CCNNNNNNNGG	3 cut(s)	497, 504, 1408
AflIII	ACRYGT	1 cut(s)	1219
AgeI	ACCGGT	1 cut(s)	497
AhdI	GACNNNNNGTC	3 cut(s)	554, 1636, 1811
AjuI	GAANNNNNNNTTGG	2 cut(s)	23, 55
AleI	CACNNNNGTG	1 cut(s)	569
AluBI	AGCT	8 cut(s)	606, 697, 824, 835, 1196, 1511, 1606, 1733
AluI	AGCT	8 cut(s)	606, 697, 824, 835, 1196, 1511, 1606, 1733
Alw21I	GWGCWC	2 cut(s)	369, 486
Alw26I	GTCTC	3 cut(s)	238, 339, 662
Alw44I	GTGCAC	1 cut(s)	365
AlwI	GGATC	2 cut(s)	707, 1261
Aor13HI	TCCGGA	1 cut(s)	308
AoxI	GGCC	5 cut(s)	329, 447, 739, 1519, 1857
ApaLI	GTGCAC	1 cut(s)	365
ApeKI	GCWGC	4 cut(s)	203, 761, 1213, 1730
ApoI	RAATTY	4 cut(s)	920, 931, 1258, 1828
AsiGI	ACCGGT	1 cut(s)	497
Asp700I	GAANNNNTTC	1 cut(s)	956
AspA2I	CCTAGG	1 cut(s)	1142
AspLEI	GCGC	2 cut(s)	72, 472
AspS9I	GGNCC	3 cut(s)	329, 1822, 1857
AsuC2I	CCSGG	2 cut(s)	212, 333
AsuHPI	GGTGA	3 cut(s)	583, 650, 1391
AvaII	GGWCC	1 cut(s)	1822
AvrII	CCTAGG	1 cut(s)	1142
AxyI	CCTNAGG	2 cut(s)	392, 1818
BaeGI	GKGCMC	1 cut(s)	369
BalI	TGGCCA	1 cut(s)	449
BanII	GRGCYC	1 cut(s)	339
Bbv12I	GWGCWC	2 cut(s)	369, 486
BbvI	GCAGC	4 cut(s)	190, 748, 1200, 1742
BccI	CCATC	5 cut(s)	128, 635, 731, 1424, 1697
BceAI	ACGGC	2 cut(s)	400, 726
BclI	TGATCA	1 cut(s)	573
BcnI	CCSGG	2 cut(s)	212, 333
BcoDI	GTCTC	3 cut(s)	238, 339, 662
BfaI	CTAG	2 cut(s)	179, 1143
BfmI	CTRYAG	1 cut(s)	1734
BisI	GCNGC	6 cut(s)	204, 762, 1214, 1522, 1731, 1785
BlnI	CCTAGG	1 cut(s)	1142
BlsI	GCNGC	6 cut(s)	205, 763, 1215, 1523, 1732, 1786
BmcAI	AGTACT	1 cut(s)	1552
Bme1390I	CCNGG	2 cut(s)	212, 333
Bme18I	GGWCC	1 cut(s)	1822
BmeRI	GACNNNNNGTC	3 cut(s)	554, 1636, 1811
BmgT120I	GGNCC	3 cut(s)	329, 1822, 1857
BmiI	GGNNCC	3 cut(s)	330, 648, 1461
BmrFI	CCNGG	2 cut(s)	212, 333
BmsI	GCATC	2 cut(s)	367, 1841
BplI	GAGNNNNNCTC	2 cut(s)	142, 174
BpuMI	CCSGG	2 cut(s)	212, 333
BsaAI	YACGTR	2 cut(s)	504, 1537
BsaHI	GRCGYC	1 cut(s)	144
BsaI	GGTCTC	1 cut(s)	662
BsaJI	CCNNGG	9 cut(s)	198, 332, 352, 409, 672, 742, 1113, 1142, 1432
BsaWI	WCCGGW	3 cut(s)	308, 497, 715
Bsc4I	CCNNNNNNNGG	3 cut(s)	497, 504, 1408
Bse118I	RCCGGY	1 cut(s)	497
Bse1I	ACTGG	2 cut(s)	220, 260
Bse21I	CCTNAGG	2 cut(s)	392, 1818
Bse3DI	GCAATG	3 cut(s)	1062, 1234, 1391
BseAI	TCCGGA	1 cut(s)	308
BseDI	CCNNGG	9 cut(s)	198, 332, 352, 409, 672, 742, 1113, 1142, 1432
BseGI	GGATG	6 cut(s)	382, 760, 963, 1252, 1432, 1856
BseLI	CCNNNNNNNGG	3 cut(s)	497, 504, 1408
BseMI	GCAATG	3 cut(s)	1062, 1234, 1391
BseMII	CTCAG	1 cut(s)	456
BseNI	ACTGG	2 cut(s)	220, 260
BseSI	GKGCMC	1 cut(s)	369
BseXI	GCAGC	4 cut(s)	190, 748, 1200, 1742
BseYI	CCCAGC	2 cut(s)	606, 1854
BsgI	GTGCAG	1 cut(s)	306
Bsh1236I	CGCG	1 cut(s)	1032
BshFI	GGCC	5 cut(s)	331, 449, 741, 1521, 1859
BshTI	ACCGGT	1 cut(s)	497
BsiHKAI	GWGCWC	2 cut(s)	369, 486
BsiSI	CCGG	5 cut(s)	211, 309, 332, 498, 716
BslFI	GGGAC	3 cut(s)	227, 275, 1799
BslI	CCNNNNNNNGG	3 cut(s)	497, 504, 1408
BsmAI	GTCTC	3 cut(s)	238, 339, 662
BsmBI	CGTCTC	1 cut(s)	339
BsmFI	GGGAC	3 cut(s)	227, 275, 1799
BsnI	GGCC	5 cut(s)	331, 449, 741, 1521, 1859
Bso31I	GGTCTC	1 cut(s)	662
Bsp1286I	GDGCHC	3 cut(s)	339, 369, 486
Bsp13I	TCCGGA	1 cut(s)	308
Bsp1407I	TGTACA	1 cut(s)	978
Bsp143I	GATC	4 cut(s)	573, 712, 1156, 1266
Bsp19I	CCATGG	3 cut(s)	352, 409, 1432
BspACI	CCGC	7 cut(s)	110, 126, 293, 508, 1030, 1522, 1784
BspANI	GGCC	5 cut(s)	331, 449, 741, 1521, 1859
BspCNI	CTCAG	1 cut(s)	457
BspEI	TCCGGA	1 cut(s)	308
BspFNI	CGCG	1 cut(s)	1032
BspHI	TCATGA	1 cut(s)	985
BspLI	GGNNCC	3 cut(s)	330, 648, 1461
BspPI	GGATC	2 cut(s)	707, 1261
BspQI	GCTCTTC	2 cut(s)	344, 474
BspTNI	GGTCTC	1 cut(s)	662
BsrBI	CCGCTC	1 cut(s)	1784
BsrDI	GCAATG	3 cut(s)	1062, 1234, 1391
BsrFI	RCCGGY	1 cut(s)	497
BsrGI	TGTACA	1 cut(s)	978
BsrI	ACTGG	2 cut(s)	220, 260
BssAI	RCCGGY	1 cut(s)	497
BssECI	CCNNGG	9 cut(s)	198, 332, 352, 409, 672, 742, 1113, 1142, 1432
BssMI	GATC	4 cut(s)	573, 712, 1156, 1266
BssNI	GRCGYC	1 cut(s)	144
BssT1I	CCWWGG	6 cut(s)	352, 409, 672, 1113, 1142, 1432
Bst4CI	ACNGT	6 cut(s)	67, 83, 364, 682, 819, 891
Bst6I	CTCTTC	2 cut(s)	344, 474
BstACI	GRCGYC	1 cut(s)	144
BstAUI	TGTACA	1 cut(s)	978
BstBAI	YACGTR	2 cut(s)	504, 1537
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	4 cut(s)	392, 465, 567, 1818
BstDSI	CCRYGG	5 cut(s)	198, 352, 409, 742, 1432
BstENI	CCTNNNNNAGG	1 cut(s)	1406
BstF5I	GGATG	6 cut(s)	382, 760, 963, 1252, 1432, 1856
BstFNI	CGCG	1 cut(s)	1032
BstHHI	GCGC	2 cut(s)	72, 472
BstKTI	GATC	4 cut(s)	576, 715, 1159, 1269
BstMAI	GTCTC	3 cut(s)	238, 339, 662
BstMBI	GATC	4 cut(s)	573, 712, 1156, 1266
BstMWI	GCNNNNNNNGC	9 cut(s)	76, 85, 94, 125, 514, 1001, 1052, 1790, 1799
BstNSI	RCATGY	2 cut(s)	1223, 1280
BstSCI	CCNGG	2 cut(s)	210, 331
BstSFI	CTRYAG	1 cut(s)	1734
BstSLI	GKGCMC	1 cut(s)	369
BstSNI	TACGTA	1 cut(s)	1537
BstUI	CGCG	1 cut(s)	1032
BstV1I	GCAGC	4 cut(s)	190, 748, 1200, 1742
BstX2I	RGATCY	1 cut(s)	1266
BstXI	CCANNNNNNTGG	1 cut(s)	1423
BstYI	RGATCY	1 cut(s)	1266
Bsu36I	CCTNAGG	2 cut(s)	392, 1818
BsuRI	GGCC	5 cut(s)	331, 449, 741, 1521, 1859
BtgI	CCRYGG	5 cut(s)	198, 352, 409, 742, 1432
BtsCI	GGATG	6 cut(s)	382, 760, 963, 1252, 1432, 1856
BtsI	GCAGTG	1 cut(s)	24
BtsIMutI	CAGTG	3 cut(s)	24, 267, 424
Cac8I	GCNNGC	1 cut(s)	6
CciI	TCATGA	1 cut(s)	985
CfoI	GCGC	2 cut(s)	72, 472
Cfr10I	RCCGGY	1 cut(s)	497
Cfr13I	GGNCC	3 cut(s)	329, 1822, 1857
CseI	GACGC	2 cut(s)	152, 1799
Csp6I	GTAC	4 cut(s)	501, 979, 1184, 1551
CspAI	ACCGGT	1 cut(s)	497
CspCI	CAANNNNNGTGG	2 cut(s)	1660, 1695
CviQI	GTAC	4 cut(s)	501, 979, 1184, 1551
DdeI	CTNAG	4 cut(s)	392, 465, 567, 1818
DpnI	GATC	4 cut(s)	575, 714, 1158, 1268
DpnII	GATC	4 cut(s)	573, 712, 1156, 1266
DriI	GACNNNNNGTC	3 cut(s)	554, 1636, 1811
EaeI	YGGCCR	2 cut(s)	447, 739
Eam1104I	CTCTTC	2 cut(s)	344, 474
Eam1105I	GACNNNNNGTC	3 cut(s)	554, 1636, 1811
EarI	CTCTTC	2 cut(s)	344, 474
Eco105I	TACGTA	1 cut(s)	1537
Eco130I	CCWWGG	6 cut(s)	352, 409, 672, 1113, 1142, 1432
Eco24I	GRGCYC	1 cut(s)	339
Eco31I	GGTCTC	1 cut(s)	662
Eco47I	GGWCC	1 cut(s)	1822
Eco57I	CTGAAG	4 cut(s)	325, 1047, 1539, 1713
Eco81I	CCTNAGG	2 cut(s)	392, 1818
EcoNI	CCTNNNNNAGG	1 cut(s)	1406
EcoO109I	RGGNCCY	1 cut(s)	1822
EcoRI	GAATTC	1 cut(s)	1258
EcoT14I	CCWWGG	6 cut(s)	352, 409, 672, 1113, 1142, 1432
EcoT38I	GRGCYC	1 cut(s)	339
ErhI	CCWWGG	6 cut(s)	352, 409, 672, 1113, 1142, 1432
Esp3I	CGTCTC	1 cut(s)	339
FalI	AAGNNNNNCTT	4 cut(s)	656, 688, 840, 872
FaqI	GGGAC	3 cut(s)	227, 275, 1799
FauI	CCCGC	1 cut(s)	300
FbaI	TGATCA	1 cut(s)	573
Fnu4HI	GCNGC	6 cut(s)	204, 762, 1214, 1522, 1731, 1785
FokI	GGATG	6 cut(s)	389, 767, 950, 1259, 1439, 1863
FriOI	GRGCYC	1 cut(s)	339
Fsp4HI	GCNGC	6 cut(s)	204, 762, 1214, 1522, 1731, 1785
FspBI	CTAG	2 cut(s)	179, 1143
GlaI	GCGC	2 cut(s)	71, 471
GluI	GCNGC	6 cut(s)	204, 762, 1214, 1522, 1731, 1785
GsaI	CCCAGC	2 cut(s)	610, 1858
HaeIII	GGCC	5 cut(s)	331, 449, 741, 1521, 1859
HapII	CCGG	5 cut(s)	211, 309, 332, 498, 716
HgaI	GACGC	2 cut(s)	152, 1799
HhaI	GCGC	2 cut(s)	72, 472
Hin1I	GRCGYC	1 cut(s)	144
Hin6I	GCGC	2 cut(s)	70, 470
HinP1I	GCGC	2 cut(s)	70, 470
HincII	GTYRAC	1 cut(s)	174
HindII	GTYRAC	1 cut(s)	174
HinfI	GANTC	6 cut(s)	194, 265, 926, 1074, 1105, 1766
HpaII	CCGG	5 cut(s)	211, 309, 332, 498, 716
HphI	GGTGA	3 cut(s)	583, 650, 1391
Hpy166II	GTNNAC	6 cut(s)	174, 367, 513, 1305, 1346, 1630
Hpy188I	TCNGA	6 cut(s)	247, 344, 1161, 1264, 1489, 1693
Hpy188III	TCNNGA	8 cut(s)	309, 559, 685, 807, 986, 1172, 1203, 1270
Hpy8I	GTNNAC	6 cut(s)	174, 367, 513, 1305, 1346, 1630
Hpy99I	CGWCG	1 cut(s)	364
HpyCH4III	ACNGT	6 cut(s)	67, 83, 364, 682, 819, 891
HpyCH4IV	ACGT	3 cut(s)	503, 582, 1536
HpyCH4V	TGCA	9 cut(s)	4, 287, 367, 764, 1055, 1216, 1312, 1544, 1730
HpyF10VI	GCNNNNNNNGC	9 cut(s)	76, 85, 94, 125, 514, 1001, 1052, 1790, 1799
HpyF3I	CTNAG	4 cut(s)	392, 465, 567, 1818
HpySE526I	ACGT	3 cut(s)	503, 582, 1536
Hsp92I	GRCGYC	1 cut(s)	144
HspAI	GCGC	2 cut(s)	70, 470
Kpn2I	TCCGGA	1 cut(s)	308
Ksp22I	TGATCA	1 cut(s)	573
Kzo9I	GATC	4 cut(s)	573, 712, 1156, 1266
LguI	GCTCTTC	2 cut(s)	344, 474
LmnI	GCTCC	4 cut(s)	524, 1201, 1459, 1781
Lsp1109I	GCAGC	4 cut(s)	190, 748, 1200, 1742
LweI	GCATC	2 cut(s)	367, 1841
MaeI	CTAG	2 cut(s)	179, 1143
MaeII	ACGT	3 cut(s)	503, 582, 1536
MaeIII	GTNAC	5 cut(s)	45, 262, 493, 804, 1706
MalI	GATC	4 cut(s)	575, 714, 1158, 1268
MbiI	CCGCTC	1 cut(s)	1784
MboI	GATC	4 cut(s)	573, 712, 1156, 1266
MboII	GAAGA	6 cut(s)	331, 491, 893, 1665, 1706, 1709
MflI	RGATCY	1 cut(s)	1266
MhlI	GDGCHC	3 cut(s)	339, 369, 486
MlsI	TGGCCA	1 cut(s)	449
MluCI	AATT	9 cut(s)	20, 657, 780, 920, 931, 1258, 1531, 1571, 1828
MluNI	TGGCCA	1 cut(s)	449
MlyI	GAGTC	2 cut(s)	188, 259
MmeI	TCCRAC	3 cut(s)	185, 456, 1106
MnlI	CCTC	8 cut(s)	108, 113, 421, 460, 539, 609, 934, 1407
Mox20I	TGGCCA	1 cut(s)	449
MroI	TCCGGA	1 cut(s)	308
MroXI	GAANNNNTTC	1 cut(s)	956
MscI	TGGCCA	1 cut(s)	449
MseI	TTAA	4 cut(s)	798, 936, 1035, 1041
MslI	CAYNNNNRTG	2 cut(s)	443, 569
Msp20I	TGGCCA	1 cut(s)	449
MspA1I	CMGCKG	1 cut(s)	1733
MspI	CCGG	5 cut(s)	211, 309, 332, 498, 716
MspR9I	CCNGG	2 cut(s)	212, 333
MvnI	CGCG	1 cut(s)	1032
MwoI	GCNNNNNNNGC	9 cut(s)	76, 85, 94, 125, 514, 1001, 1052, 1790, 1799
NciI	CCSGG	2 cut(s)	212, 333
NcoI	CCATGG	3 cut(s)	352, 409, 1432
NdeII	GATC	4 cut(s)	573, 712, 1156, 1266
NlaIV	GGNNCC	3 cut(s)	330, 648, 1461
NmeAIII	GCCGAG	1 cut(s)	172
NmuCI	GTSAC	4 cut(s)	45, 262, 493, 804
NspI	RCATGY	2 cut(s)	1223, 1280
OliI	CACNNNNGTG	1 cut(s)	569
PagI	TCATGA	1 cut(s)	985
PciI	ACATGT	1 cut(s)	1219
PciSI	GCTCTTC	2 cut(s)	344, 474
PcsI	WCGNNNNNNNCGW	1 cut(s)	195
PdmI	GAANNNNTTC	1 cut(s)	956
PfeI	GAWTC	4 cut(s)	926, 1074, 1105, 1766
PfoI	TCCNGGA	1 cut(s)	210
PinAI	ACCGGT	1 cut(s)	497
PkrI	GCNGC	6 cut(s)	205, 763, 1215, 1523, 1732, 1786
PleI	GAGTC	2 cut(s)	188, 259
PpsI	GAGTC	2 cut(s)	188, 259
Ppu21I	YACGTR	2 cut(s)	504, 1537
PpuMI	RGGWCCY	1 cut(s)	1822
PscI	ACATGT	1 cut(s)	1219
Psp5II	RGGWCCY	1 cut(s)	1822
PspFI	CCCAGC	2 cut(s)	606, 1854
PspN4I	GGNNCC	3 cut(s)	330, 648, 1461
PspPI	GGNCC	3 cut(s)	329, 1822, 1857
PspPPI	RGGWCCY	1 cut(s)	1822
PsrI	GAACNNNNNNTAC	2 cut(s)	1543, 1575
PsuI	RGATCY	1 cut(s)	1266
PvuII	CAGCTG	1 cut(s)	1733
RsaI	GTAC	4 cut(s)	502, 980, 1185, 1552
RsaNI	GTAC	4 cut(s)	501, 979, 1184, 1551
RseI	CAYNNNNRTG	2 cut(s)	443, 569
SapI	GCTCTTC	2 cut(s)	344, 474
SaqAI	TTAA	4 cut(s)	798, 936, 1035, 1041
SatI	GCNGC	6 cut(s)	204, 762, 1214, 1522, 1731, 1785
Sau3AI	GATC	4 cut(s)	573, 712, 1156, 1266
Sau96I	GGNCC	3 cut(s)	329, 1822, 1857
ScaI	AGTACT	1 cut(s)	1552
SchI	GAGTC	2 cut(s)	188, 259
ScrFI	CCNGG	2 cut(s)	212, 333
SduI	GDGCHC	3 cut(s)	339, 369, 486
SfaNI	GCATC	2 cut(s)	367, 1841
SfcI	CTRYAG	1 cut(s)	1734
SinI	GGWCC	1 cut(s)	1822
SmiMI	CAYNNNNRTG	2 cut(s)	443, 569
SnaBI	TACGTA	1 cut(s)	1537
Sse9I	AATT	9 cut(s)	20, 657, 780, 920, 931, 1258, 1531, 1571, 1828
SsiI	CCGC	7 cut(s)	110, 126, 293, 508, 1030, 1522, 1784
SspI	AATATT	1 cut(s)	39
SspMI	CTAG	2 cut(s)	179, 1143
StyD4I	CCNGG	2 cut(s)	210, 331
StyI	CCWWGG	6 cut(s)	352, 409, 672, 1113, 1142, 1432
TaaI	ACNGT	6 cut(s)	67, 83, 364, 682, 819, 891
TaiI	ACGT	3 cut(s)	506, 585, 1539
TaqI	TCGA	7 cut(s)	189, 359, 837, 1171, 1350, 1358, 1722
TasI	AATT	9 cut(s)	20, 657, 780, 920, 931, 1258, 1531, 1571, 1828
TatI	WGTACW	2 cut(s)	978, 1550
TauI	GCSGC	2 cut(s)	1524, 1787
TfiI	GAWTC	4 cut(s)	926, 1074, 1105, 1766
Tru1I	TTAA	4 cut(s)	798, 936, 1035, 1041
Tru9I	TTAA	4 cut(s)	798, 936, 1035, 1041
TscAI	CASTG	3 cut(s)	31, 267, 424
TseFI	GTSAC	4 cut(s)	45, 262, 493, 804
TseI	GCWGC	4 cut(s)	203, 761, 1213, 1730
Tsp45I	GTSAC	4 cut(s)	45, 262, 493, 804
TspDTI	ATGAA	7 cut(s)	433, 933, 949, 974, 1263, 1379, 1835
TspGWI	ACGGA	2 cut(s)	64, 187
TspRI	CASTG	3 cut(s)	31, 267, 424
VneI	GTGCAC	1 cut(s)	365
VpaK11BI	GGWCC	1 cut(s)	1822
XagI	CCTNNNNNAGG	1 cut(s)	1406
XapI	RAATTY	4 cut(s)	920, 931, 1258, 1828
XceI	RCATGY	2 cut(s)	1223, 1280
XcmI	CCANNNNNNNNNTGG	2 cut(s)	416, 1624
XmaJI	CCTAGG	1 cut(s)	1142
XmnI	GAANNNNTTC	1 cut(s)	956
XspI	CTAG	2 cut(s)	179, 1143
ZrmI	AGTACT	1 cut(s)	1552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.