Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001225

Physical Location & Seq

Genomic Coordinates Forward (+)

38794118 .. 38803940

Gene Structure 9823 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G017570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1815 bp

ATGCAAGCCAATCCCTTCCAATTCACTGCCAAATCAATATTCCCGTCACGGATAAACATACCTACGGTGCGCCAACAGTACCGTTCGCCTTCTTTGCCTCCCCTCAAACCGCCATGTGCCATCTCCGCTTCTACTCCCAATGACGCCGAGAGTTCTACTCCAATTACCATGTCCACCCTAGAAGTGGTCGATGACTCCGTGGCTGCGTTCCGGGACTACCAGTTTCTCTTTGTCTCGCAACGCTCGGAAACAAACGAGCCGGTGACTCTAGAAGTTGTTGAAGGTGCGGTCCCGCCAGAGTTTCCTTCCGGAACATACTATTTGGCAGGACCGGGGCTCTTCAGGGACGACCACGGCTCCACTGTGCACCCTTTGGATGGTCACGGCTACCTTAGGGCTTTCACTTTCCATGGGTACGTGAAAACTGAGACGCAGTTGGAAGAGCAGGACCCCGTGACCGGCAAGTGGCGGTTCACGCATAGGGGAGCGTTCTCGGTGTTGAAGGGAGGACAGAAAATCGGGAACACTAAGGTGATCAAAAACGTGGCGAATACTAGTGTGTTGAGCTGGGGTGGGAGGCTGATGTGCTTGTGGGAAGGTGGTGGGGAACCTTACGAAATTGAAAAGGAGACCTTGGAAACTGTCGGGAAGGTCAAGCTCATGGAAGGTTGCGATCCGGTGGTGGAGAGTGCGAGTGATGGCCGTGGTGTTTGGGATGTTGCTGCAAGATTGTTGAAGCCAATTTTGTATGAAGTGTTTAAGATGTCAGGAAAGCGACTATTAGCTCATTACAAGCTCGACACTCACAAAGATAGACTTCTTATGATGTCATGTAATACAGAAGATATACTGTTGCCACACAATACTTTTACATTTTATGAATTTGATTCAAATTTTAAGGAGGTGGGAAAGAAAGAGTTCATCATCCCAGATCACTTGTTGATTCATGATTGGGCTTTCACAACCAGTTATTATATACTATGTGCAATGACTTCAGTTTGTGGAATCACTCCAACGATGACAGCATTATCTGTGAATCCTACCAAGGACACATCTCCAATATATTTGCTTCCTAGGTTTCCTAATGATGTGAATTATAGTCGAGATTGGAGAGTACCTATTGAAGCTCCTTCACGATTTTGGCTGCAACATGTAGGCAATGCCTATGATTATTTGGATGAAAATGGGAATTCAGAGATTCAAATACATGCGTCTGTCTGCTCTTACGAGTGGTTCACTTTGCAAAAGTTGTTTGGATATGATTGGCAAAGTGGTAAACTCGACCCTTCGATTATGAACTTGGGTAGAAACCAAAGCAAAAAATTGCCTCACCTTGTTCAGGTTTCGATCAGCTTGGATGCCAATGGAATCTGTCAAAGATGTGATGTGGAGCCTATGAACGAGTGGAGCAAGTCATCAGATTTTCTTGTTATCAATCCAGCATTTTCAGGCCGCAAAAATAATTTTGTATATGCACCAACTACTTCAGGTTCTCGCAGTGAATTGCCAAACTTTCCATTTGACATGGTGGTGAAGCTCAATCTTTCAACTAAATCTGTGCACACATGGTCTGCTGGTAGTAGAAGATTTGTCGGTGAACCCATTTTCGTTGCTAAAGGTTCTGAAGAAGATGAGGGTTACATTCTTGTAGTAGAGTATGCAGTTGCAGTTCAAATGTGCTATTTGGTTATCTTGGATTCAAAAAAGATTGGAGCGGCTGACGCACTTGTGGCAAGACTTGAATTTCCCTTTGGCTTTTGGCTATTTCGGGACATAAGATGCCATGTCTCACACCATGCCAATTTGGTGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001763 GO:0003674 GO:0003824 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008300 GO:0008610 GO:0009056 GO:0009058 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010016 GO:0010033 GO:0010223 GO:0010346 GO:0010436 GO:0010817 GO:0016042 GO:0016106 GO:0016114 GO:0016119 GO:0016121 GO:0016491 GO:0016701 GO:0016702 GO:0018130 GO:0032501 GO:0032502 GO:0042214 GO:0042221 GO:0042445 GO:0042446 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0045549 GO:0046247 GO:0046483 GO:0048367 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051213 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901334 GO:1901336 GO:1901360 GO:1901362 GO:1901575 GO:1901576 GO:1901600 GO:1901601 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00906 map00906

Pfam Domains

Protein Families

RPE65

Protein Analysis

604

Amino Acids

67.98

Weight (kDa)

6.04

Isoelectric Point (pI)

39.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPE65	PF03055	78 - 584	4.8e-75	Retinal pigment epithelial membrane protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44990 AT2G44990 AT2G44990
fragaria_vesca	FvH4_7g10450
malus_domestica	MD07G1110600.v1.1
prunus_persica	Prupe.2G133900_v2.0.a1
pyrus_communis	pycom07g09530
rosa_chinensis	RchiOBHm_Chr1g0342921 RchiOBHm_Chr1g0342931 RchiOBHm_Chr1g0348141 RchiOBHm_Chr1g0348171 RchiOBHm_Chr1g0348201 RchiOBHm_Chr2g0136091 RchiOBHm_Chr7g0229961
rosa_laevigata	RLG00000028678 RLG00000028682 RLG00000028684 RLG00000028685 RLG00000028686
rosa_multiflora	Rmu_co8414565.1_g000001 Rmu_co8499605.1_g000001 Rmu_sc0001563.1_g000031 Rmu_sc0001890.1_g000013 Rmu_sc0001890.1_g000015 Rmu_sc0002209.1_g000017 Rmu_sc0003991.1_g000009 Rmu_sc0004502.1_g000011 Rmu_sc0004502.1_g000018 Rmu_sc0005046.1_g000018
rosa_roxburghii	Rroxscaffold_4G00307110 Rroxscaffold_4G00307160 Rroxscaffold_4G00307170 Rroxscaffold_4G00307180
rosa_rugosa	Rorug01G0145700.1 Rorug01G0192700 Rorug01G0192900 Rorug01G0193500
rosa_samantha	Rh1AG095900 Rh1AG210700 Rh1AG210800 Rh1BG176200 Rh1BG176800 Rh1BG177100 Rh1BG177200 Rh1CG195000 Rh1CG195100 Rh1DG205900 Rh1DG206300 Rh1DG206600 Rh1DG206700 Rh3DG305500
rosa_wichuraiana	Rw0G011410 Rw1G017570 Rw1G017580 Rw1G017590 Rw1G017800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1715
AccIII	TCCGGA	1 cut(s)	308
AciI	CCGC	7 cut(s)	110, 126, 287, 293, 469, 1453, 1715
AclWI	GGATC	1 cut(s)	668
AcoI	YGGCCR	1 cut(s)	700
AcsI	RAATTY	4 cut(s)	881, 892, 1189, 1742
AcuI	CTGAAG	4 cut(s)	325, 978, 1470, 1644
AcyI	GRCGYC	1 cut(s)	144
AfaI	GTAC	3 cut(s)	80, 416, 1116
AfiI	CCNNNNNNNGG	5 cut(s)	184, 377, 458, 465, 1339
AflIII	ACRYGT	1 cut(s)	1150
AhlI	ACTAGT	1 cut(s)	554
AjuI	GAANNNNNNNTTGG	4 cut(s)	23, 55, 1734, 1766
AleI	CACNNNNGTG	1 cut(s)	530
AluBI	AGCT	7 cut(s)	567, 658, 785, 796, 1127, 1353, 1537
AluI	AGCT	7 cut(s)	567, 658, 785, 796, 1127, 1353, 1537
Alw21I	GWGCWC	2 cut(s)	369, 1563
Alw26I	GTCTC	4 cut(s)	238, 422, 623, 1792
Alw44I	GTGCAC	2 cut(s)	365, 1559
AlwI	GGATC	1 cut(s)	668
Aor13HI	TCCGGA	1 cut(s)	308
AoxI	GGCC	2 cut(s)	700, 1450
ApaLI	GTGCAC	2 cut(s)	365, 1559
ApeKI	GCWGC	3 cut(s)	203, 722, 1144
ApoI	RAATTY	4 cut(s)	881, 892, 1189, 1742
Asp700I	GAANNNNTTC	1 cut(s)	917
AspA2I	CCTAGG	1 cut(s)	1073
AspLEI	GCGC	1 cut(s)	72
AspS9I	GGNCC	3 cut(s)	289, 329, 448
AsuC2I	CCSGG	2 cut(s)	212, 333
AsuHPI	GGTGA	5 cut(s)	274, 544, 1322, 1543, 1607
AvaII	GGWCC	3 cut(s)	289, 329, 448
AvrII	CCTAGG	1 cut(s)	1073
AxyI	CCTNAGG	1 cut(s)	392
BaeGI	GKGCMC	2 cut(s)	369, 1563
BanII	GRGCYC	1 cut(s)	339
Bbv12I	GWGCWC	2 cut(s)	369, 1563
BbvI	GCAGC	3 cut(s)	190, 709, 1131
BccI	CCATC	3 cut(s)	128, 371, 692
BceAI	ACGGC	3 cut(s)	370, 400, 687
BclI	TGATCA	1 cut(s)	534
BcnI	CCSGG	2 cut(s)	212, 333
BcoDI	GTCTC	4 cut(s)	238, 422, 623, 1792
BcuI	ACTAGT	1 cut(s)	554
BfaI	CTAG	4 cut(s)	179, 269, 555, 1074
BisI	GCNGC	5 cut(s)	204, 723, 1145, 1453, 1716
BlnI	CCTAGG	1 cut(s)	1073
BlsI	GCNGC	5 cut(s)	205, 724, 1146, 1454, 1717
Bme1390I	CCNGG	2 cut(s)	212, 333
Bme18I	GGWCC	3 cut(s)	289, 329, 448
BmgT120I	GGNCC	3 cut(s)	289, 329, 448
BmiI	GGNNCC	5 cut(s)	291, 358, 450, 609, 1392
BmrFI	CCNGG	2 cut(s)	212, 333
BmsI	GCATC	2 cut(s)	1348, 1769
BplI	GAGNNNNNCTC	2 cut(s)	142, 174
BpuMI	CCSGG	2 cut(s)	212, 333
BsaAI	YACGTR	1 cut(s)	418
BsaHI	GRCGYC	1 cut(s)	144
BsaI	GGTCTC	1 cut(s)	623
BsaJI	CCNNGG	8 cut(s)	198, 332, 352, 409, 633, 703, 1044, 1073
BsaWI	WCCGGW	2 cut(s)	308, 676
BsaXI	ACNNNNNCTCC	2 cut(s)	341, 371
Bsc4I	CCNNNNNNNGG	5 cut(s)	184, 377, 458, 465, 1339
Bse118I	RCCGGY	2 cut(s)	259, 458
Bse1I	ACTGG	2 cut(s)	220, 966
Bse21I	CCTNAGG	1 cut(s)	392
Bse3DI	GCAATG	2 cut(s)	993, 1165
BseAI	TCCGGA	1 cut(s)	308
BseDI	CCNNGG	8 cut(s)	198, 332, 352, 409, 633, 703, 1044, 1073
BseGI	GGATG	5 cut(s)	382, 721, 924, 1183, 1363
BseLI	CCNNNNNNNGG	5 cut(s)	184, 377, 458, 465, 1339
BseMI	GCAATG	2 cut(s)	993, 1165
BseMII	CTCAG	1 cut(s)	417
BseNI	ACTGG	2 cut(s)	220, 966
BseSI	GKGCMC	2 cut(s)	369, 1563
BseXI	GCAGC	3 cut(s)	190, 709, 1131
BseYI	CCCAGC	1 cut(s)	567
BshFI	GGCC	2 cut(s)	702, 1452
BsiHKAI	GWGCWC	2 cut(s)	369, 1563
BsiSI	CCGG	6 cut(s)	211, 260, 309, 332, 459, 677
BslFI	GGGAC	4 cut(s)	227, 275, 359, 1784
BslI	CCNNNNNNNGG	5 cut(s)	184, 377, 458, 465, 1339
BsmAI	GTCTC	4 cut(s)	238, 422, 623, 1792
BsmBI	CGTCTC	1 cut(s)	422
BsmFI	GGGAC	4 cut(s)	227, 275, 359, 1784
BsnI	GGCC	2 cut(s)	702, 1452
Bso31I	GGTCTC	1 cut(s)	623
Bsp1286I	GDGCHC	3 cut(s)	339, 369, 1563
Bsp13I	TCCGGA	1 cut(s)	308
Bsp143I	GATC	4 cut(s)	534, 673, 931, 1347
Bsp19I	CCATGG	1 cut(s)	409
BspACI	CCGC	7 cut(s)	110, 126, 287, 293, 469, 1453, 1715
BspANI	GGCC	2 cut(s)	702, 1452
BspCNI	CTCAG	1 cut(s)	418
BspEI	TCCGGA	1 cut(s)	308
BspHI	TCATGA	1 cut(s)	946
BspLI	GGNNCC	5 cut(s)	291, 358, 450, 609, 1392
BspPI	GGATC	1 cut(s)	668
BspQI	GCTCTTC	2 cut(s)	344, 435
BspTNI	GGTCTC	1 cut(s)	623
BsrBI	CCGCTC	1 cut(s)	1715
BsrDI	GCAATG	2 cut(s)	993, 1165
BsrFI	RCCGGY	2 cut(s)	259, 458
BsrI	ACTGG	2 cut(s)	220, 966
BssAI	RCCGGY	2 cut(s)	259, 458
BssECI	CCNNGG	8 cut(s)	198, 332, 352, 409, 633, 703, 1044, 1073
BssMI	GATC	4 cut(s)	534, 673, 931, 1347
BssNI	GRCGYC	1 cut(s)	144
BssT1I	CCWWGG	4 cut(s)	409, 633, 1044, 1073
Bst4CI	ACNGT	6 cut(s)	67, 78, 83, 364, 643, 852
Bst6I	CTCTTC	2 cut(s)	344, 435
BstACI	GRCGYC	1 cut(s)	144
BstBAI	YACGTR	1 cut(s)	418
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	3 cut(s)	392, 426, 528
BstDSI	CCRYGG	4 cut(s)	198, 352, 409, 703
BstENI	CCTNNNNNAGG	1 cut(s)	1337
BstF5I	GGATG	5 cut(s)	382, 721, 924, 1183, 1363
BstHHI	GCGC	1 cut(s)	72
BstKTI	GATC	4 cut(s)	537, 676, 934, 1350
BstMAI	GTCTC	4 cut(s)	238, 422, 623, 1792
BstMBI	GATC	4 cut(s)	534, 673, 931, 1347
BstMWI	GCNNNNNNNGC	5 cut(s)	94, 125, 475, 1721, 1730
BstNSI	RCATGY	2 cut(s)	1154, 1211
BstSCI	CCNGG	2 cut(s)	210, 331
BstSLI	GKGCMC	2 cut(s)	369, 1563
BstV1I	GCAGC	3 cut(s)	190, 709, 1131
Bsu36I	CCTNAGG	1 cut(s)	392
BsuRI	GGCC	2 cut(s)	702, 1452
BtgI	CCRYGG	4 cut(s)	198, 352, 409, 703
BtsCI	GGATG	5 cut(s)	382, 721, 924, 1183, 1363
BtsI	GCAGTG	2 cut(s)	24, 1504
BtsIMutI	CAGTG	3 cut(s)	24, 360, 1504
Cac8I	GCNNGC	1 cut(s)	6
CciI	TCATGA	1 cut(s)	946
CfoI	GCGC	1 cut(s)	72
Cfr10I	RCCGGY	2 cut(s)	259, 458
Cfr13I	GGNCC	3 cut(s)	289, 329, 448
CseI	GACGC	4 cut(s)	152, 439, 1200, 1730
Csp6I	GTAC	3 cut(s)	79, 415, 1115
CviQI	GTAC	3 cut(s)	79, 415, 1115
DdeI	CTNAG	3 cut(s)	392, 426, 528
DpnI	GATC	4 cut(s)	536, 675, 933, 1349
DpnII	GATC	4 cut(s)	534, 673, 931, 1347
EaeI	YGGCCR	1 cut(s)	700
Eam1104I	CTCTTC	2 cut(s)	344, 435
EarI	CTCTTC	2 cut(s)	344, 435
Eco130I	CCWWGG	4 cut(s)	409, 633, 1044, 1073
Eco24I	GRGCYC	1 cut(s)	339
Eco31I	GGTCTC	1 cut(s)	623
Eco47I	GGWCC	3 cut(s)	289, 329, 448
Eco57I	CTGAAG	4 cut(s)	325, 978, 1470, 1644
Eco81I	CCTNAGG	1 cut(s)	392
EcoNI	CCTNNNNNAGG	1 cut(s)	1337
EcoO109I	RGGNCCY	1 cut(s)	448
EcoRI	GAATTC	1 cut(s)	1189
EcoT14I	CCWWGG	4 cut(s)	409, 633, 1044, 1073
EcoT38I	GRGCYC	1 cut(s)	339
ErhI	CCWWGG	4 cut(s)	409, 633, 1044, 1073
Esp3I	CGTCTC	1 cut(s)	422
FalI	AAGNNNNNCTT	4 cut(s)	617, 649, 801, 833
FaqI	GGGAC	4 cut(s)	227, 275, 359, 1784
FauI	CCCGC	1 cut(s)	300
FbaI	TGATCA	1 cut(s)	534
Fnu4HI	GCNGC	5 cut(s)	204, 723, 1145, 1453, 1716
FokI	GGATG	5 cut(s)	389, 728, 911, 1190, 1370
FriOI	GRGCYC	1 cut(s)	339
Fsp4HI	GCNGC	5 cut(s)	204, 723, 1145, 1453, 1716
FspBI	CTAG	4 cut(s)	179, 269, 555, 1074
GlaI	GCGC	1 cut(s)	71
GluI	GCNGC	5 cut(s)	204, 723, 1145, 1453, 1716
GsaI	CCCAGC	1 cut(s)	571
HaeIII	GGCC	2 cut(s)	702, 1452
HapII	CCGG	6 cut(s)	211, 260, 309, 332, 459, 677
HgaI	GACGC	4 cut(s)	152, 439, 1200, 1730
HhaI	GCGC	1 cut(s)	72
Hin1I	GRCGYC	1 cut(s)	144
Hin6I	GCGC	1 cut(s)	70
HinP1I	GCGC	1 cut(s)	70
HinfI	GANTC	9 cut(s)	194, 265, 887, 943, 1005, 1036, 1198, 1368, 1697
HpaII	CCGG	6 cut(s)	211, 260, 309, 332, 459, 677
HphI	GGTGA	5 cut(s)	274, 544, 1322, 1543, 1607
Hpy166II	GTNNAC	7 cut(s)	174, 367, 474, 1236, 1277, 1561, 1598
Hpy188I	TCNGA	4 cut(s)	247, 1195, 1420, 1624
Hpy188III	TCNNGA	9 cut(s)	269, 309, 520, 646, 768, 947, 1103, 1134, 1769
Hpy8I	GTNNAC	7 cut(s)	174, 367, 474, 1236, 1277, 1561, 1598
HpyCH4III	ACNGT	6 cut(s)	67, 78, 83, 364, 643, 852
HpyCH4IV	ACGT	2 cut(s)	417, 543
HpyF10VI	GCNNNNNNNGC	5 cut(s)	94, 125, 475, 1721, 1730
HpyF3I	CTNAG	3 cut(s)	392, 426, 528
HpySE526I	ACGT	2 cut(s)	417, 543
Hsp92I	GRCGYC	1 cut(s)	144
HspAI	GCGC	1 cut(s)	70
Kpn2I	TCCGGA	1 cut(s)	308
Ksp22I	TGATCA	1 cut(s)	534
Kzo9I	GATC	4 cut(s)	534, 673, 931, 1347
LguI	GCTCTTC	2 cut(s)	344, 435
LmnI	GCTCC	6 cut(s)	362, 485, 1132, 1390, 1407, 1712
Lsp1109I	GCAGC	3 cut(s)	190, 709, 1131
LweI	GCATC	2 cut(s)	1348, 1769
MaeI	CTAG	4 cut(s)	179, 269, 555, 1074
MaeII	ACGT	2 cut(s)	417, 543
MaeIII	GTNAC	5 cut(s)	45, 262, 380, 454, 1637
MalI	GATC	4 cut(s)	536, 675, 933, 1349
MbiI	CCGCTC	1 cut(s)	1715
MboI	GATC	4 cut(s)	534, 673, 931, 1347
MboII	GAAGA	6 cut(s)	331, 452, 854, 1596, 1637, 1640
MhlI	GDGCHC	3 cut(s)	339, 369, 1563
MlyI	GAGTC	2 cut(s)	188, 259
MmeI	TCCRAC	2 cut(s)	417, 1037
MnlI	CCTC	7 cut(s)	108, 113, 500, 570, 895, 1338, 1627
MroI	TCCGGA	1 cut(s)	308
MroXI	GAANNNNTTC	1 cut(s)	917
MseI	TTAA	2 cut(s)	759, 897
MslI	CAYNNNNRTG	2 cut(s)	530, 1529
MspI	CCGG	6 cut(s)	211, 260, 309, 332, 459, 677
MspR9I	CCNGG	2 cut(s)	212, 333
MwoI	GCNNNNNNNGC	5 cut(s)	94, 125, 475, 1721, 1730
NciI	CCSGG	2 cut(s)	212, 333
NcoI	CCATGG	1 cut(s)	409
NdeII	GATC	4 cut(s)	534, 673, 931, 1347
NlaIV	GGNNCC	5 cut(s)	291, 358, 450, 609, 1392
NmeAIII	GCCGAG	1 cut(s)	172
NmuCI	GTSAC	4 cut(s)	45, 262, 380, 454
NspI	RCATGY	2 cut(s)	1154, 1211
OliI	CACNNNNGTG	1 cut(s)	530
PagI	TCATGA	1 cut(s)	946
PciI	ACATGT	1 cut(s)	1150
PciSI	GCTCTTC	2 cut(s)	344, 435
PcsI	WCGNNNNNNNCGW	1 cut(s)	195
PdmI	GAANNNNTTC	1 cut(s)	917
PfeI	GAWTC	7 cut(s)	887, 943, 1005, 1036, 1198, 1368, 1697
PfoI	TCCNGGA	1 cut(s)	210
PkrI	GCNGC	5 cut(s)	205, 724, 1146, 1454, 1717
PleI	GAGTC	2 cut(s)	188, 259
PpsI	GAGTC	2 cut(s)	188, 259
Ppu21I	YACGTR	1 cut(s)	418
PpuMI	RGGWCCY	1 cut(s)	448
PscI	ACATGT	1 cut(s)	1150
Psp5II	RGGWCCY	1 cut(s)	448
PspFI	CCCAGC	1 cut(s)	567
PspN4I	GGNNCC	5 cut(s)	291, 358, 450, 609, 1392
PspPI	GGNCC	3 cut(s)	289, 329, 448
PspPPI	RGGWCCY	1 cut(s)	448
RsaI	GTAC	3 cut(s)	80, 416, 1116
RsaNI	GTAC	3 cut(s)	79, 415, 1115
RseI	CAYNNNNRTG	2 cut(s)	530, 1529
SapI	GCTCTTC	2 cut(s)	344, 435
SaqAI	TTAA	2 cut(s)	759, 897
SatI	GCNGC	5 cut(s)	204, 723, 1145, 1453, 1716
Sau3AI	GATC	4 cut(s)	534, 673, 931, 1347
Sau96I	GGNCC	3 cut(s)	289, 329, 448
SchI	GAGTC	2 cut(s)	188, 259
ScrFI	CCNGG	2 cut(s)	212, 333
SduI	GDGCHC	3 cut(s)	339, 369, 1563
SfaNI	GCATC	2 cut(s)	1348, 1769
SinI	GGWCC	3 cut(s)	289, 329, 448
SmiMI	CAYNNNNRTG	2 cut(s)	530, 1529
SpeI	ACTAGT	1 cut(s)	554
SsiI	CCGC	7 cut(s)	110, 126, 287, 293, 469, 1453, 1715
SspI	AATATT	1 cut(s)	39
SspMI	CTAG	4 cut(s)	179, 269, 555, 1074
StyD4I	CCNGG	2 cut(s)	210, 331
StyI	CCWWGG	4 cut(s)	409, 633, 1044, 1073
TaaI	ACNGT	6 cut(s)	67, 78, 83, 364, 643, 852
TaiI	ACGT	2 cut(s)	420, 546
TaqI	TCGA	6 cut(s)	189, 798, 1102, 1281, 1289, 1346
TauI	GCSGC	2 cut(s)	1455, 1718
TfiI	GAWTC	7 cut(s)	887, 943, 1005, 1036, 1198, 1368, 1697
Tru1I	TTAA	2 cut(s)	759, 897
Tru9I	TTAA	2 cut(s)	759, 897
TscAI	CASTG	3 cut(s)	31, 367, 1504
TseFI	GTSAC	4 cut(s)	45, 262, 380, 454
TseI	GCWGC	3 cut(s)	203, 722, 1144
Tsp45I	GTSAC	4 cut(s)	45, 262, 380, 454
TspDTI	ATGAA	7 cut(s)	765, 894, 910, 935, 1194, 1310, 1412
TspGWI	ACGGA	2 cut(s)	64, 187
TspRI	CASTG	3 cut(s)	31, 367, 1504
VneI	GTGCAC	2 cut(s)	365, 1559
VpaK11BI	GGWCC	3 cut(s)	289, 329, 448
XagI	CCTNNNNNAGG	1 cut(s)	1337
XapI	RAATTY	4 cut(s)	881, 892, 1189, 1742
XbaI	TCTAGA	1 cut(s)	268
XceI	RCATGY	2 cut(s)	1154, 1211
XcmI	CCANNNNNNNNNTGG	1 cut(s)	181
XmaJI	CCTAGG	1 cut(s)	1073
XmnI	GAANNNNTTC	1 cut(s)	917
XspI	CTAG	4 cut(s)	179, 269, 555, 1074

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.