Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001225

Physical Location & Seq

Genomic Coordinates Forward (+)

26994121 .. 26997058

Gene Structure 2938 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0193500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGCAACTCTAAGGGATCTGAAAATCAAGACTGGCACTTGTAAACGCCTCGTTAAGGAGTTTCATTCTTATGAGAAAGAGGTTGAGAGAGAGGCTGCGAAAACAGCAGACATGAAGGGGAAAGGAGCTGATCCTTATGACCTCAAGCAACAGGAAAATGTGCTGGCTGAATCAAGGATGATGATTCCCGATTGTCGAAAGCGCCTGGAGGCCTCACTAGCTGAGTTAAAAGGAAGTTTGGCTGAGTTGGAAGAAGAGTTGAACCAGAAGGAAGGCCCTGAAATTGAAGAAGCTCGGACCATTATTGCAGAAGTCGATAAGTTGTTCCAGACAACAGAAGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001763 GO:0003674 GO:0003824 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008300 GO:0008610 GO:0009056 GO:0009058 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010016 GO:0010033 GO:0010223 GO:0010346 GO:0010436 GO:0010817 GO:0016042 GO:0016106 GO:0016114 GO:0016119 GO:0016121 GO:0016491 GO:0016701 GO:0016702 GO:0018130 GO:0032501 GO:0032502 GO:0042214 GO:0042221 GO:0042445 GO:0042446 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0045549 GO:0046247 GO:0046483 GO:0048367 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051213 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901334 GO:1901336 GO:1901360 GO:1901362 GO:1901575 GO:1901576 GO:1901600 GO:1901601 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00906 map00906

Pfam Domains

Protein Families

RPE65

Protein Analysis

114

Amino Acids

12.96

Weight (kDa)

5.08

Isoelectric Point (pI)

30.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TBCA	PF02970	3 - 102	1.6e-30	Tubulin binding cofactor A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44990 AT2G44990 AT2G44990
fragaria_vesca	FvH4_7g10450
malus_domestica	MD07G1110600.v1.1
prunus_persica	Prupe.2G133900_v2.0.a1
pyrus_communis	pycom07g09530
rosa_chinensis	RchiOBHm_Chr1g0342921 RchiOBHm_Chr1g0342931 RchiOBHm_Chr1g0348141 RchiOBHm_Chr1g0348171 RchiOBHm_Chr1g0348201 RchiOBHm_Chr2g0136091 RchiOBHm_Chr7g0229961
rosa_laevigata	RLG00000028678 RLG00000028682 RLG00000028684 RLG00000028685 RLG00000028686
rosa_multiflora	Rmu_co8414565.1_g000001 Rmu_co8499605.1_g000001 Rmu_sc0001563.1_g000031 Rmu_sc0001890.1_g000013 Rmu_sc0001890.1_g000015 Rmu_sc0002209.1_g000017 Rmu_sc0003991.1_g000009 Rmu_sc0004502.1_g000011 Rmu_sc0004502.1_g000018 Rmu_sc0005046.1_g000018
rosa_roxburghii	Rroxscaffold_4G00307110 Rroxscaffold_4G00307160 Rroxscaffold_4G00307170 Rroxscaffold_4G00307180
rosa_rugosa	Rorug01G0145700.1 Rorug01G0192700 Rorug01G0192900 Rorug01G0193500
rosa_samantha	Rh1AG095900 Rh1AG210700 Rh1AG210800 Rh1BG176200 Rh1BG176800 Rh1BG177100 Rh1BG177200 Rh1CG195000 Rh1CG195100 Rh1DG205900 Rh1DG206300 Rh1DG206600 Rh1DG206700 Rh3DG305500
rosa_wichuraiana	Rw0G011410 Rw1G017570 Rw1G017580 Rw1G017590 Rw1G017800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	24, 125
AfiI	CCNNNNNNNGG	1 cut(s)	55
AgsI	TTSAA	2 cut(s)	262, 287
AjnI	CCWGG	1 cut(s)	204
AluBI	AGCT	3 cut(s)	128, 221, 293
AluI	AGCT	3 cut(s)	128, 221, 293
AlwI	GGATC	2 cut(s)	24, 125
AoxI	GGCC	2 cut(s)	210, 274
ApeKI	GCWGC	1 cut(s)	95
AspLEI	GCGC	1 cut(s)	204
AspS9I	GGNCC	2 cut(s)	275, 297
AvaII	GGWCC	1 cut(s)	297
BbvI	GCAGC	1 cut(s)	82
BciT130I	CCWGG	1 cut(s)	206
BfaI	CTAG	2 cut(s)	218, 343
BfoI	RGCGCY	1 cut(s)	205
BisI	GCNGC	1 cut(s)	96
BlsI	GCNGC	1 cut(s)	97
Bme1390I	CCNGG	1 cut(s)	206
Bme18I	GGWCC	1 cut(s)	297
BmgT120I	GGNCC	2 cut(s)	275, 297
BmrFI	CCNGG	1 cut(s)	206
BpmI	CTGGAG	1 cut(s)	227
BpuEI	CTTGAG	1 cut(s)	128
Bsc4I	CCNNNNNNNGG	1 cut(s)	55
Bse1I	ACTGG	1 cut(s)	37
BseBI	CCWGG	1 cut(s)	206
BseGI	GGATG	1 cut(s)	183
BseLI	CCNNNNNNNGG	1 cut(s)	55
BseMII	CTCAG	2 cut(s)	213, 234
BseNI	ACTGG	1 cut(s)	37
BseXI	GCAGC	1 cut(s)	82
BshFI	GGCC	2 cut(s)	212, 276
BslI	CCNNNNNNNGG	1 cut(s)	55
BsnI	GGCC	2 cut(s)	212, 276
Bsp143I	GATC	2 cut(s)	16, 130
BspANI	GGCC	2 cut(s)	212, 276
BspCNI	CTCAG	2 cut(s)	214, 235
BspPI	GGATC	2 cut(s)	24, 125
BsrI	ACTGG	1 cut(s)	37
BssMI	GATC	2 cut(s)	16, 130
Bst2UI	CCWGG	1 cut(s)	206
Bst6I	CTCTTC	1 cut(s)	249
BstC8I	GCNNGC	1 cut(s)	165
BstDEI	CTNAG	3 cut(s)	11, 222, 243
BstENI	CCTNNNNNAGG	1 cut(s)	53
BstF5I	GGATG	1 cut(s)	183
BstH2I	RGCGCY	1 cut(s)	205
BstHHI	GCGC	1 cut(s)	204
BstKTI	GATC	2 cut(s)	19, 133
BstMBI	GATC	2 cut(s)	16, 130
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 218
BstNI	CCWGG	1 cut(s)	206
BstSCI	CCNGG	1 cut(s)	204
BstV1I	GCAGC	1 cut(s)	82
BstX2I	RGATCY	1 cut(s)	16
BstYI	RGATCY	1 cut(s)	16
BsuRI	GGCC	2 cut(s)	212, 276
BtsCI	GGATG	1 cut(s)	183
Cac8I	GCNNGC	1 cut(s)	165
CfoI	GCGC	1 cut(s)	204
Cfr13I	GGNCC	2 cut(s)	275, 297
CviAII	CATG	1 cut(s)	112
CviJI	RGCY	9 cut(s)	95, 128, 167, 212, 221, 242, 276, 293, 341
CviKI_1	RGCY	9 cut(s)	95, 128, 167, 212, 221, 242, 276, 293, 341
DdeI	CTNAG	3 cut(s)	11, 222, 243
DpnI	GATC	2 cut(s)	18, 132
DpnII	GATC	2 cut(s)	16, 130
Eam1104I	CTCTTC	1 cut(s)	249
EarI	CTCTTC	1 cut(s)	249
Eco147I	AGGCCT	1 cut(s)	212
Eco47I	GGWCC	1 cut(s)	297
EcoNI	CCTNNNNNAGG	1 cut(s)	53
EcoO109I	RGGNCCY	1 cut(s)	275
EcoRII	CCWGG	1 cut(s)	204
FaeI	CATG	1 cut(s)	115
FaiI	YATR	3 cut(s)	72, 113, 138
FatI	CATG	1 cut(s)	111
Fnu4HI	GCNGC	1 cut(s)	96
FokI	GGATG	1 cut(s)	190
Fsp4HI	GCNGC	1 cut(s)	96
FspBI	CTAG	2 cut(s)	218, 343
GlaI	GCGC	1 cut(s)	203
GluI	GCNGC	1 cut(s)	96
GsuI	CTGGAG	1 cut(s)	227
HaeII	RGCGCY	1 cut(s)	205
HaeIII	GGCC	2 cut(s)	212, 276
HhaI	GCGC	1 cut(s)	204
Hin1II	CATG	1 cut(s)	115
Hin6I	GCGC	1 cut(s)	202
HinP1I	GCGC	1 cut(s)	202
HinfI	GANTC	2 cut(s)	170, 184
Hpy166II	GTNNAC	1 cut(s)	44
Hpy188I	TCNGA	2 cut(s)	21, 297
Hpy188III	TCNNGA	3 cut(s)	28, 188, 328
Hpy8I	GTNNAC	1 cut(s)	44
HpyAV	CCTTC	3 cut(s)	109, 262, 266
HpyCH4V	TGCA	1 cut(s)	308
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 218
HpyF3I	CTNAG	3 cut(s)	11, 222, 243
Hsp92II	CATG	1 cut(s)	115
HspAI	GCGC	1 cut(s)	202
Kzo9I	GATC	2 cut(s)	16, 130
LmnI	GCTCC	1 cut(s)	125
LpnPI	CCDG	8 cut(s)	18, 137, 149, 191, 218, 278, 291, 341
Lsp1109I	GCAGC	1 cut(s)	82
MaeI	CTAG	2 cut(s)	218, 343
MalI	GATC	2 cut(s)	18, 132
MboI	GATC	2 cut(s)	16, 130
MboII	GAAGA	3 cut(s)	263, 266, 299
MflI	RGATCY	1 cut(s)	16
MluCI	AATT	1 cut(s)	282
MmeI	TCCRAC	1 cut(s)	228
MnlI	CCTC	6 cut(s)	59, 73, 85, 152, 202, 223
MseI	TTAA	2 cut(s)	54, 227
MslI	CAYNNNNRTG	1 cut(s)	69
MspR9I	CCNGG	1 cut(s)	206
MvaI	CCWGG	1 cut(s)	206
MwoI	GCNNNNNNNGC	2 cut(s)	104, 218
NdeII	GATC	2 cut(s)	16, 130
NlaIII	CATG	1 cut(s)	115
PceI	AGGCCT	1 cut(s)	212
PfeI	GAWTC	2 cut(s)	170, 184
PkrI	GCNGC	1 cut(s)	97
Psp6I	CCWGG	1 cut(s)	204
PspGI	CCWGG	1 cut(s)	204
PspPI	GGNCC	2 cut(s)	275, 297
PsuI	RGATCY	1 cut(s)	16
RseI	CAYNNNNRTG	1 cut(s)	69
SaqAI	TTAA	2 cut(s)	54, 227
SatI	GCNGC	1 cut(s)	96
Sau3AI	GATC	2 cut(s)	16, 130
Sau96I	GGNCC	2 cut(s)	275, 297
ScrFI	CCNGG	1 cut(s)	206
SetI	ASST	5 cut(s)	84, 130, 144, 223, 295
SinI	GGWCC	1 cut(s)	297
SmiMI	CAYNNNNRTG	1 cut(s)	69
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
Sse9I	AATT	1 cut(s)	282
SseBI	AGGCCT	1 cut(s)	212
SspMI	CTAG	2 cut(s)	218, 343
StuI	AGGCCT	1 cut(s)	212
StyD4I	CCNGG	1 cut(s)	204
TaqI	TCGA	2 cut(s)	196, 315
TasI	AATT	1 cut(s)	282
TfiI	GAWTC	2 cut(s)	170, 184
Tru1I	TTAA	2 cut(s)	54, 227
Tru9I	TTAA	2 cut(s)	54, 227
TseI	GCWGC	1 cut(s)	95
TspDTI	ATGAA	2 cut(s)	53, 128
VpaK11BI	GGWCC	1 cut(s)	297
XagI	CCTNNNNNAGG	1 cut(s)	53
XspI	CTAG	2 cut(s)	218, 343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.