Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001563.1

Orthogroup ID

OG0001225

Physical Location & Seq

Genomic Coordinates Forward (+)

118048 .. 119286

Gene Structure 1239 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001563.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

atggccgccaccaacgagctcagggaaagctggtcgtcaacactccaaagcctcgtctctgacccgacaccggagaacttcgtatacaccttcgccggcaatcgggcttctgcaaagctagggtacctccgaccaccaccgtttcgaccccagacgtggttgatgattctgtttccgcattctgggactaccagttcctcttcgtctcgcaacgctcagaaacaaccgaaccgtgacgatcatggctctactatgcaccttttggacggtcacggctacctcagggctttttggttcgatgagaataatggggacgaagttaaggtcaagttcttggccaagtacgtgaagactgaggcgcaggtggaagaacatgatccggttaccggagcgtggcggttcacgaactgggggaggctgttgtgcttatgggaaggtggcgacccgtatgagattgaaccggagactttggctactgtctggaaggtcaagctgtggaggccattaaagagaaggaattggctaggcctgggcaccgtcccagcccggtatgtaatttgtaaggcccgggaccgagcccgaatatttcgggtcgggctcaactttagtttttcagttttaaggaccagaaaggcccggaccgaaaaaaaccgggccggaggactagggagagaagggaaaagaaaagaatctgatggggaaggaggactagggagagaaaggaaaagtaaagaaaagaacagacagtggagagtctggggaggagaagaagaagaagaagaagataaggagagaagaaaaatgggggacaaaagaggggatgaagaacatgactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001763 GO:0003674 GO:0003824 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008300 GO:0008610 GO:0009056 GO:0009058 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010016 GO:0010033 GO:0010223 GO:0010346 GO:0010436 GO:0010817 GO:0016042 GO:0016106 GO:0016114 GO:0016119 GO:0016121 GO:0016491 GO:0016701 GO:0016702 GO:0018130 GO:0032501 GO:0032502 GO:0042214 GO:0042221 GO:0042445 GO:0042446 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0045549 GO:0046247 GO:0046483 GO:0048367 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051213 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901334 GO:1901336 GO:1901360 GO:1901362 GO:1901575 GO:1901576 GO:1901600 GO:1901601 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00906 map00906

Pfam Domains

Protein Families

RPE65

Protein Analysis

278

Amino Acids

32.13

Weight (kDa)

9.51

Isoelectric Point (pI)

50.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44990 AT2G44990 AT2G44990
fragaria_vesca	FvH4_7g10450
malus_domestica	MD07G1110600.v1.1
prunus_persica	Prupe.2G133900_v2.0.a1
pyrus_communis	pycom07g09530
rosa_chinensis	RchiOBHm_Chr1g0342921 RchiOBHm_Chr1g0342931 RchiOBHm_Chr1g0348141 RchiOBHm_Chr1g0348171 RchiOBHm_Chr1g0348201 RchiOBHm_Chr2g0136091 RchiOBHm_Chr7g0229961
rosa_laevigata	RLG00000028678 RLG00000028682 RLG00000028684 RLG00000028685 RLG00000028686
rosa_multiflora	Rmu_co8414565.1_g000001 Rmu_co8499605.1_g000001 Rmu_sc0001563.1_g000031 Rmu_sc0001890.1_g000013 Rmu_sc0001890.1_g000015 Rmu_sc0002209.1_g000017 Rmu_sc0003991.1_g000009 Rmu_sc0004502.1_g000011 Rmu_sc0004502.1_g000018 Rmu_sc0005046.1_g000018
rosa_roxburghii	Rroxscaffold_4G00307110 Rroxscaffold_4G00307160 Rroxscaffold_4G00307170 Rroxscaffold_4G00307180
rosa_rugosa	Rorug01G0145700.1 Rorug01G0192700 Rorug01G0192900 Rorug01G0193500
rosa_samantha	Rh1AG095900 Rh1AG210700 Rh1AG210800 Rh1BG176200 Rh1BG176800 Rh1BG177100 Rh1BG177200 Rh1CG195000 Rh1CG195100 Rh1DG205900 Rh1DG206300 Rh1DG206600 Rh1DG206700 Rh3DG305500
rosa_wichuraiana	Rw0G011410 Rw1G017570 Rw1G017580 Rw1G017590 Rw1G017800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	352
Acc36I	ACCTGC	1 cut(s)	352
Acc65I	GGTACC	1 cut(s)	123
AccB1I	GGYRCC	2 cut(s)	123, 533
AccI	GTMKAC	1 cut(s)	84
AciI	CCGC	3 cut(s)	6, 176, 397
AclWI	GGATC	1 cut(s)	371
AcoI	YGGCCR	2 cut(s)	3, 336
AfaI	GTAC	2 cut(s)	125, 344
AfiI	CCNNNNNNNGG	6 cut(s)	70, 102, 156, 182, 386, 393
AgsI	TTSAA	1 cut(s)	458
AjiI	CACGTC	1 cut(s)	156
AjnI	CCWGG	1 cut(s)	528
AloI	GAACNNNNNNTCC	2 cut(s)	178, 210
AluBI	AGCT	4 cut(s)	19, 30, 118, 493
AluI	AGCT	4 cut(s)	19, 30, 118, 493
Alw21I	GWGCWC	1 cut(s)	21
Alw26I	GTCTC	3 cut(s)	61, 210, 458
AlwI	GGATC	1 cut(s)	371
Ama87I	CYCGRG	1 cut(s)	567
AoxI	GGCC	7 cut(s)	3, 336, 500, 526, 564, 633, 654
ArsI	GACNNNNNNTTYG	2 cut(s)	309, 341
Asp718I	GGTACC	1 cut(s)	123
AspLEI	GCGC	1 cut(s)	361
AspS9I	GGNCC	6 cut(s)	565, 571, 624, 634, 639, 654
AsuC2I	CCSGG	5 cut(s)	547, 568, 569, 637, 653
AvaI	CYCGRG	1 cut(s)	567
AvaII	GGWCC	3 cut(s)	571, 624, 639
AxyI	CCTNAGG	1 cut(s)	281
BaeGI	GKGCMC	1 cut(s)	536
BalI	TGGCCA	1 cut(s)	338
BanI	GGYRCC	2 cut(s)	123, 533
BanII	GRGCYC	3 cut(s)	21, 580, 600
BbsI	GAAGAC	1 cut(s)	356
Bbv12I	GWGCWC	1 cut(s)	21
BccI	CCATC	1 cut(s)	689
BceAI	ACGGC	1 cut(s)	289
BciT130I	CCWGG	1 cut(s)	530
BcnI	CCSGG	5 cut(s)	547, 568, 569, 637, 653
BcoDI	GTCTC	3 cut(s)	61, 210, 458
BfaI	CTAG	5 cut(s)	119, 524, 665, 710, 835
BfuAI	ACCTGC	1 cut(s)	352
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	6 cut(s)	530, 547, 568, 569, 637, 653
Bme18I	GGWCC	3 cut(s)	571, 624, 639
BmeT110I	CYCGRG	1 cut(s)	567
BmgBI	CACGTC	1 cut(s)	156
BmgT120I	GGNCC	6 cut(s)	565, 571, 624, 634, 639, 654
BmiI	GGNNCC	3 cut(s)	125, 535, 572
BmrFI	CCNGG	6 cut(s)	530, 547, 568, 569, 637, 653
BmrI	ACTGGG	1 cut(s)	418
BmuI	ACTGGG	1 cut(s)	418
BpiI	GAAGAC	1 cut(s)	356
Bpu10I	CCTNAGC	1 cut(s)	20
BpuMI	CCSGG	5 cut(s)	547, 568, 569, 637, 653
BsaAI	YACGTR	1 cut(s)	346
BsaJI	CCNNGG	2 cut(s)	529, 567
BsaWI	WCCGGW	4 cut(s)	70, 379, 386, 460
Bsc4I	CCNNNNNNNGG	6 cut(s)	70, 102, 156, 182, 386, 393
Bse118I	RCCGGY	1 cut(s)	95
Bse1I	ACTGG	2 cut(s)	192, 413
Bse21I	CCTNAGG	1 cut(s)	281
BseBI	CCWGG	1 cut(s)	530
BseDI	CCNNGG	2 cut(s)	529, 567
BseGI	GGATG	1 cut(s)	826
BseLI	CCNNNNNNNGG	6 cut(s)	70, 102, 156, 182, 386, 393
BseMII	CTCAG	4 cut(s)	34, 230, 295, 345
BseNI	ACTGG	2 cut(s)	192, 413
BseRI	GAGGAG	1 cut(s)	777
BseSI	GKGCMC	1 cut(s)	536
BseYI	CCCAGC	1 cut(s)	541
BshFI	GGCC	7 cut(s)	5, 338, 502, 528, 566, 635, 656
BshNI	GGYRCC	2 cut(s)	123, 533
BsiHKAI	GWGCWC	1 cut(s)	21
BsiHKCI	CYCGRG	1 cut(s)	567
BslFI	GGGAC	5 cut(s)	199, 326, 524, 584, 821
BslI	CCNNNNNNNGG	6 cut(s)	70, 102, 156, 182, 386, 393
BsmAI	GTCTC	3 cut(s)	61, 210, 458
BsmBI	CGTCTC	2 cut(s)	61, 210
BsmFI	GGGAC	5 cut(s)	199, 326, 524, 584, 821
BsmI	GAATGC	1 cut(s)	178
BsnI	GGCC	7 cut(s)	5, 338, 502, 528, 566, 635, 656
BsoBI	CYCGRG	1 cut(s)	567
Bsp1286I	GDGCHC	4 cut(s)	21, 536, 580, 600
Bsp143I	GATC	2 cut(s)	238, 376
BspACI	CCGC	3 cut(s)	6, 176, 397
BspANI	GGCC	7 cut(s)	5, 338, 502, 528, 566, 635, 656
BspCNI	CTCAG	4 cut(s)	33, 229, 294, 346
BspLI	GGNNCC	3 cut(s)	125, 535, 572
BspMI	ACCTGC	1 cut(s)	352
BspPI	GGATC	1 cut(s)	371
BspT107I	GGYRCC	2 cut(s)	123, 533
BsrFI	RCCGGY	1 cut(s)	95
BsrI	ACTGG	2 cut(s)	192, 413
BssAI	RCCGGY	1 cut(s)	95
BssECI	CCNNGG	2 cut(s)	529, 567
BssMI	GATC	2 cut(s)	238, 376
BssNAI	GTATAC	1 cut(s)	85
Bst1107I	GTATAC	1 cut(s)	85
Bst2UI	CCWGG	1 cut(s)	530
Bst4CI	ACNGT	6 cut(s)	141, 233, 269, 478, 538, 747
Bst6I	CTCTTC	1 cut(s)	205
BstBAI	YACGTR	1 cut(s)	346
BstC8I	GCNNGC	1 cut(s)	97
BstDEI	CTNAG	4 cut(s)	20, 216, 281, 354
BstEII	GGTNACC	1 cut(s)	382
BstF5I	GGATG	1 cut(s)	826
BstHHI	GCGC	1 cut(s)	361
BstKTI	GATC	2 cut(s)	241, 379
BstMAI	GTCTC	3 cut(s)	61, 210, 458
BstMBI	GATC	2 cut(s)	238, 376
BstMWI	GCNNNNNNNGC	1 cut(s)	499
BstNI	CCWGG	1 cut(s)	530
BstPI	GGTNACC	1 cut(s)	382
BstSCI	CCNGG	6 cut(s)	528, 545, 566, 567, 635, 651
BstSLI	GKGCMC	1 cut(s)	536
BstV2I	GAAGAC	1 cut(s)	356
BstZ17I	GTATAC	1 cut(s)	85
Bsu36I	CCTNAGG	1 cut(s)	281
BsuRI	GGCC	7 cut(s)	5, 338, 502, 528, 566, 635, 656
BtrI	CACGTC	1 cut(s)	156
BtsCI	GGATG	1 cut(s)	826
BtsIMutI	CAGTG	1 cut(s)	752
BveI	ACCTGC	1 cut(s)	352
Cac8I	GCNNGC	1 cut(s)	97
CfoI	GCGC	1 cut(s)	361
Cfr10I	RCCGGY	1 cut(s)	95
Cfr13I	GGNCC	6 cut(s)	565, 571, 624, 634, 639, 654
Cfr9I	CCCGGG	1 cut(s)	567
CpoI	CGGWCCG	1 cut(s)	639
Csp6I	GTAC	2 cut(s)	124, 343
CspI	CGGWCCG	1 cut(s)	639
CviAII	CATG	3 cut(s)	242, 374, 830
CviQI	GTAC	2 cut(s)	124, 343
DdeI	CTNAG	4 cut(s)	20, 216, 281, 354
DpnI	GATC	2 cut(s)	240, 378
DpnII	GATC	2 cut(s)	238, 376
EaeI	YGGCCR	2 cut(s)	3, 336
Eam1104I	CTCTTC	1 cut(s)	205
EarI	CTCTTC	1 cut(s)	205
Ecl136II	GAGCTC	1 cut(s)	19
Eco147I	AGGCCT	1 cut(s)	528
Eco24I	GRGCYC	3 cut(s)	21, 580, 600
Eco47I	GGWCC	3 cut(s)	571, 624, 639
Eco53kI	GAGCTC	1 cut(s)	19
Eco81I	CCTNAGG	1 cut(s)	281
Eco88I	CYCGRG	1 cut(s)	567
Eco91I	GGTNACC	1 cut(s)	382
EcoICRI	GAGCTC	1 cut(s)	19
EcoO65I	GGTNACC	1 cut(s)	382
EcoRII	CCWGG	1 cut(s)	528
EcoT38I	GRGCYC	3 cut(s)	21, 580, 600
Esp3I	CGTCTC	2 cut(s)	61, 210
FaeI	CATG	3 cut(s)	245, 377, 833
FaiI	YATR	8 cut(s)	85, 243, 254, 375, 430, 450, 552, 831
FaqI	GGGAC	5 cut(s)	199, 326, 524, 584, 821
FatI	CATG	3 cut(s)	241, 373, 829
FblI	GTMKAC	1 cut(s)	84
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	1 cut(s)	833
FriOI	GRGCYC	3 cut(s)	21, 580, 600
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	5 cut(s)	119, 524, 665, 710, 835
GlaI	GCGC	1 cut(s)	360
GluI	GCNGC	1 cut(s)	6
GsaI	CCCAGC	1 cut(s)	545
HaeIII	GGCC	7 cut(s)	5, 338, 502, 528, 566, 635, 656
HhaI	GCGC	1 cut(s)	361
Hin1II	CATG	3 cut(s)	245, 377, 833
Hin6I	GCGC	1 cut(s)	359
HinP1I	GCGC	1 cut(s)	359
HincII	GTYRAC	1 cut(s)	39
HindII	GTYRAC	1 cut(s)	39
HinfI	GANTC	3 cut(s)	166, 689, 753
Hpy166II	GTNNAC	3 cut(s)	39, 85, 402
Hpy188I	TCNGA	4 cut(s)	61, 131, 219, 694
Hpy188III	TCNNGA	2 cut(s)	403, 481
Hpy8I	GTNNAC	3 cut(s)	39, 85, 402
HpyAV	CCTTC	6 cut(s)	100, 428, 478, 507, 668, 695
HpyCH4III	ACNGT	6 cut(s)	141, 233, 269, 478, 538, 747
HpyCH4IV	ACGT	2 cut(s)	155, 345
HpyCH4V	TGCA	2 cut(s)	113, 256
HpyF10VI	GCNNNNNNNGC	1 cut(s)	499
HpyF3I	CTNAG	4 cut(s)	20, 216, 281, 354
HpySE526I	ACGT	2 cut(s)	155, 345
Hsp92II	CATG	3 cut(s)	245, 377, 833
HspAI	GCGC	1 cut(s)	359
KpnI	GGTACC	1 cut(s)	127
KroI	GCCGGC	1 cut(s)	95
KroNI	GCCGGC	1 cut(s)	97
Kzo9I	GATC	2 cut(s)	238, 376
LmnI	GCTCC	1 cut(s)	389
MaeI	CTAG	5 cut(s)	119, 524, 665, 710, 835
MaeII	ACGT	2 cut(s)	155, 345
MaeIII	GTNAC	3 cut(s)	233, 269, 382
MalI	GATC	2 cut(s)	240, 378
MboI	GATC	2 cut(s)	238, 376
MhlI	GDGCHC	4 cut(s)	21, 536, 580, 600
MlsI	TGGCCA	1 cut(s)	338
MluCI	AATT	2 cut(s)	517, 555
MluNI	TGGCCA	1 cut(s)	338
MlyI	GAGTC	1 cut(s)	762
MmeI	TCCRAC	1 cut(s)	154
Mox20I	TGGCCA	1 cut(s)	338
MroNI	GCCGGC	1 cut(s)	95
MscI	TGGCCA	1 cut(s)	338
MseI	TTAA	3 cut(s)	321, 506, 620
Msp20I	TGGCCA	1 cut(s)	338
MspR9I	CCNGG	6 cut(s)	530, 547, 568, 569, 637, 653
Mva1269I	GAATGC	1 cut(s)	178
MvaI	CCWGG	1 cut(s)	530
MwoI	GCNNNNNNNGC	1 cut(s)	499
NaeI	GCCGGC	1 cut(s)	97
NciI	CCSGG	5 cut(s)	547, 568, 569, 637, 653
NdeII	GATC	2 cut(s)	238, 376
NgoMIV	GCCGGC	1 cut(s)	95
NlaIII	CATG	3 cut(s)	245, 377, 833
NlaIV	GGNNCC	3 cut(s)	125, 535, 572
NmuCI	GTSAC	2 cut(s)	233, 269
PaqCI	CACCTGC	1 cut(s)	352
PceI	AGGCCT	1 cut(s)	528
PctI	GAATGC	1 cut(s)	178
PdiI	GCCGGC	1 cut(s)	97
PfeI	GAWTC	2 cut(s)	166, 689
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	1 cut(s)	761
PpsI	GAGTC	1 cut(s)	761
Ppu21I	YACGTR	1 cut(s)	346
Psp124BI	GAGCTC	1 cut(s)	21
Psp6I	CCWGG	1 cut(s)	528
PspEI	GGTNACC	1 cut(s)	382
PspFI	CCCAGC	1 cut(s)	541
PspGI	CCWGG	1 cut(s)	528
PspN4I	GGNNCC	3 cut(s)	125, 535, 572
PspPI	GGNCC	6 cut(s)	565, 571, 624, 634, 639, 654
PsrI	GAACNNNNNNTAC	2 cut(s)	68, 100
RsaI	GTAC	2 cut(s)	125, 344
RsaNI	GTAC	2 cut(s)	124, 343
Rsr2I	CGGWCCG	1 cut(s)	639
RsrII	CGGWCCG	1 cut(s)	639
SacI	GAGCTC	1 cut(s)	21
SaqAI	TTAA	3 cut(s)	321, 506, 620
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	2 cut(s)	238, 376
Sau96I	GGNCC	6 cut(s)	565, 571, 624, 634, 639, 654
SchI	GAGTC	1 cut(s)	762
ScrFI	CCNGG	6 cut(s)	530, 547, 568, 569, 637, 653
SduI	GDGCHC	4 cut(s)	21, 536, 580, 600
SinI	GGWCC	3 cut(s)	571, 624, 639
SmaI	CCCGGG	1 cut(s)	569
Sse9I	AATT	2 cut(s)	517, 555
SseBI	AGGCCT	1 cut(s)	528
SsiI	CCGC	3 cut(s)	6, 176, 397
SspI	AATATT	1 cut(s)	585
SspMI	CTAG	5 cut(s)	119, 524, 665, 710, 835
SstI	GAGCTC	1 cut(s)	21
StuI	AGGCCT	1 cut(s)	528
StyD4I	CCNGG	6 cut(s)	528, 545, 566, 567, 635, 651
TaaI	ACNGT	6 cut(s)	141, 233, 269, 478, 538, 747
TaiI	ACGT	2 cut(s)	158, 348
TaqI	TCGA	2 cut(s)	145, 297
TaqII	GACCGA	2 cut(s)	588, 656
TasI	AATT	2 cut(s)	517, 555
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	2 cut(s)	166, 689
Tru1I	TTAA	3 cut(s)	321, 506, 620
Tru9I	TTAA	3 cut(s)	321, 506, 620
TscAI	CASTG	1 cut(s)	752
TseFI	GTSAC	2 cut(s)	233, 269
Tsp45I	GTSAC	2 cut(s)	233, 269
TspDTI	ATGAA	1 cut(s)	837
TspMI	CCCGGG	1 cut(s)	567
TspRI	CASTG	1 cut(s)	752
VpaK11BI	GGWCC	3 cut(s)	571, 624, 639
XmaI	CCCGGG	1 cut(s)	567
XmiI	GTMKAC	1 cut(s)	84
XspI	CTAG	5 cut(s)	119, 524, 665, 710, 835

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.