Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001225

Physical Location & Seq

Genomic Coordinates Reverse (-)

28229595 .. 28241377

Gene Structure 11783 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00307160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGAAGAGGAAGAGATTGGGAGAGAGCAGCCGAAAGGGCTGCCCTTTTTGTTATGCGGCGGTGCTTCGTCTAGGTTCCTCCCCCGAATGAGAGATGGGATTTCCTTATATATGGCTGCAGATTCCTATTCAATGTACGATTACTTTCCTTGTATGATTGAGATTCTATGCATTGATGTTGTCGCCATTAAATTGCCACCTCTTAACCTTCAAATACCCAATATGCAAGCTAGCCCCTTCCAAGTCATTCGCAAACCAATATTTCCCTCACCAATAAAAATACCTCCGGTACACCGACGTCCTCCCTCGCAACGAGTTCGTGCCATCACTAGTTCCACAACCAATGAAACCCATAGTTCTACTCCAATTTCCATATCAACTCTAGAAGTGGTCGATGCCTCCGTGGCCGCATTCTGGGACTACCAGTTCCTCTTCGTCTCGCAACGCTCGGAAACAAACGAGCCCGTGACTCTACAAGTCGTCGAAGGTGCGGTCCCGACGGTGTTTCCTTCCAGAACATACTACTTGGCGGGACCAGGGATCTTCAGGGATGACCACGGTTCGACCATGCACCCTTTCGACGGTCACGGCTGCCTCAGGGCTTTTACTTTCGATGGGGTTAATGGGGATAAGTTCAGTGTCAAGTTCATGGCGAGGTACGTGAATACTGAGGCAAAGGTGGAAGAGCACGACCCGGTGACCAACACGTGGCTGTTCCGACATAGGGGGTTGTTCTCGATGCTGATGAGAGGAGAGAGAGTTTGGAACACCAAGGTGATGAAAAACGTGGCGAATACTAGTGTGTTGAGCTGGGGTGGGAGGCTGTTGTGCTTGTGGGAAGGAGGGGAACCATACGAAATTGAACCGGAGAGGTTGGATATGATCGGGAAGATTGACCTGAACCGAGGCAAGCTTAGTGTGACGATGAAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001763 GO:0003674 GO:0003824 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008300 GO:0008610 GO:0009056 GO:0009058 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010016 GO:0010033 GO:0010223 GO:0010346 GO:0010436 GO:0010817 GO:0016042 GO:0016106 GO:0016114 GO:0016119 GO:0016121 GO:0016491 GO:0016701 GO:0016702 GO:0018130 GO:0032501 GO:0032502 GO:0042214 GO:0042221 GO:0042445 GO:0042446 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0045549 GO:0046247 GO:0046483 GO:0048367 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051213 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901334 GO:1901336 GO:1901360 GO:1901362 GO:1901575 GO:1901576 GO:1901600 GO:1901601 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00906 map00906

Pfam Domains

Protein Families

RPE65

Protein Analysis

311

Amino Acids

35.14

Weight (kDa)

6.67

Isoelectric Point (pI)

48.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPE65	PF03055	146 - 302	3.3e-29	Retinal pigment epithelial membrane protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44990 AT2G44990 AT2G44990
fragaria_vesca	FvH4_7g10450
malus_domestica	MD07G1110600.v1.1
prunus_persica	Prupe.2G133900_v2.0.a1
pyrus_communis	pycom07g09530
rosa_chinensis	RchiOBHm_Chr1g0342921 RchiOBHm_Chr1g0342931 RchiOBHm_Chr1g0348141 RchiOBHm_Chr1g0348171 RchiOBHm_Chr1g0348201 RchiOBHm_Chr2g0136091 RchiOBHm_Chr7g0229961
rosa_laevigata	RLG00000028678 RLG00000028682 RLG00000028684 RLG00000028685 RLG00000028686
rosa_multiflora	Rmu_co8414565.1_g000001 Rmu_co8499605.1_g000001 Rmu_sc0001563.1_g000031 Rmu_sc0001890.1_g000013 Rmu_sc0001890.1_g000015 Rmu_sc0002209.1_g000017 Rmu_sc0003991.1_g000009 Rmu_sc0004502.1_g000011 Rmu_sc0004502.1_g000018 Rmu_sc0005046.1_g000018
rosa_roxburghii	Rroxscaffold_4G00307110 Rroxscaffold_4G00307160 Rroxscaffold_4G00307170 Rroxscaffold_4G00307180
rosa_rugosa	Rorug01G0145700.1 Rorug01G0192700 Rorug01G0192900 Rorug01G0193500
rosa_samantha	Rh1AG095900 Rh1AG210700 Rh1AG210800 Rh1BG176200 Rh1BG176800 Rh1BG177100 Rh1BG177200 Rh1CG195000 Rh1CG195100 Rh1DG205900 Rh1DG206300 Rh1DG206600 Rh1DG206700 Rh3DG305500
rosa_wichuraiana	Rw0G011410 Rw1G017570 Rw1G017580 Rw1G017590 Rw1G017800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	301
AccB7I	CCANNNNNTGG	1 cut(s)	708
AciI	CCGC	5 cut(s)	57, 60, 408, 491, 530
AclWI	GGATC	1 cut(s)	548
AcoI	YGGCCR	1 cut(s)	405
AcuI	CTGAAG	1 cut(s)	529
AcvI	CACGTG	1 cut(s)	708
AcyI	GRCGYC	1 cut(s)	298
AfaI	GTAC	3 cut(s)	137, 291, 659
AfiI	CCNNNNNNNGG	4 cut(s)	414, 581, 708, 724
AflIII	ACRYGT	1 cut(s)	705
AgsI	TTSAA	3 cut(s)	132, 212, 863
AhlI	ACTAGT	2 cut(s)	329, 797
AjnI	CCWGG	1 cut(s)	535
AleI	CACNNNNGTG	1 cut(s)	773
AloI	GAACNNNNNNTCC	2 cut(s)	410, 442
AluBI	AGCT	3 cut(s)	230, 810, 913
AluI	AGCT	3 cut(s)	230, 810, 913
Alw21I	GWGCWC	1 cut(s)	690
Alw26I	GTCTC	1 cut(s)	442
AlwI	GGATC	1 cut(s)	548
AoxI	GGCC	1 cut(s)	405
ApeKI	GCWGC	4 cut(s)	28, 40, 116, 591
ArsI	GACNNNNNNTTYG	2 cut(s)	477, 509
AspS9I	GGNCC	2 cut(s)	493, 533
AsuC2I	CCSGG	1 cut(s)	695
AsuHPI	GGTGA	3 cut(s)	261, 709, 787
AsuNHI	GCTAGC	1 cut(s)	230
AvaII	GGWCC	2 cut(s)	493, 533
AxyI	CCTNAGG	1 cut(s)	596
BanII	GRGCYC	1 cut(s)	465
BbrPI	CACGTG	1 cut(s)	708
Bbv12I	GWGCWC	1 cut(s)	690
BbvI	GCAGC	4 cut(s)	27, 40, 103, 578
BccI	CCATC	3 cut(s)	89, 332, 608
BceAI	ACGGC	1 cut(s)	604
BcgI	CGANNNNNNTGC	4 cut(s)	22, 56, 299, 333
BciT130I	CCWGG	1 cut(s)	537
BcnI	CCSGG	1 cut(s)	695
BcoDI	GTCTC	1 cut(s)	442
BcuI	ACTAGT	2 cut(s)	329, 797
BfaI	CTAG	5 cut(s)	72, 231, 330, 383, 798
BfmI	CTRYAG	1 cut(s)	117
BglI	GCCNNNNNGGC	2 cut(s)	37, 404
BisI	GCNGC	6 cut(s)	29, 41, 58, 117, 408, 592
BlsI	GCNGC	6 cut(s)	30, 42, 59, 118, 409, 593
Bme1390I	CCNGG	2 cut(s)	537, 695
Bme18I	GGWCC	2 cut(s)	493, 533
BmgT120I	GGNCC	2 cut(s)	493, 533
BmiI	GGNNCC	4 cut(s)	77, 495, 534, 849
BmrFI	CCNGG	2 cut(s)	537, 695
BmsI	GCATC	2 cut(s)	385, 729
BmtI	GCTAGC	1 cut(s)	234
BpuMI	CCSGG	1 cut(s)	695
BsaAI	YACGTR	2 cut(s)	661, 708
BsaHI	GRCGYC	1 cut(s)	298
BsaJI	CCNNGG	5 cut(s)	402, 536, 556, 771, 904
BsaWI	WCCGGW	2 cut(s)	286, 865
BsaXI	ACNNNNNCTCC	2 cut(s)	744, 774
Bsc4I	CCNNNNNNNGG	4 cut(s)	414, 581, 708, 724
Bse1I	ACTGG	1 cut(s)	424
Bse21I	CCTNAGG	1 cut(s)	596
BseBI	CCWGG	1 cut(s)	537
BseDI	CCNNGG	5 cut(s)	402, 536, 556, 771, 904
BseGI	GGATG	1 cut(s)	556
BseLI	CCNNNNNNNGG	4 cut(s)	414, 581, 708, 724
BseMII	CTCAG	2 cut(s)	610, 660
BseNI	ACTGG	1 cut(s)	424
BseRI	GAGGAG	1 cut(s)	765
BseXI	GCAGC	4 cut(s)	27, 40, 103, 578
BseYI	CCCAGC	1 cut(s)	810
BshFI	GGCC	1 cut(s)	407
BsiHKAI	GWGCWC	1 cut(s)	690
BsiSI	CCGG	3 cut(s)	287, 695, 866
BslFI	GGGAC	3 cut(s)	431, 479, 546
BslI	CCNNNNNNNGG	4 cut(s)	414, 581, 708, 724
BsmAI	GTCTC	1 cut(s)	442
BsmBI	CGTCTC	1 cut(s)	442
BsmFI	GGGAC	3 cut(s)	431, 479, 546
BsmI	GAATGC	1 cut(s)	410
BsnI	GGCC	1 cut(s)	407
Bsp1286I	GDGCHC	2 cut(s)	465, 690
Bsp143I	GATC	2 cut(s)	540, 882
BspACI	CCGC	5 cut(s)	57, 60, 408, 491, 530
BspANI	GGCC	1 cut(s)	407
BspCNI	CTCAG	2 cut(s)	609, 661
BspLI	GGNNCC	4 cut(s)	77, 495, 534, 849
BspMAI	CTGCAG	1 cut(s)	121
BspOI	GCTAGC	1 cut(s)	234
BspPI	GGATC	1 cut(s)	548
BspQI	GCTCTTC	1 cut(s)	678
BsrI	ACTGG	1 cut(s)	424
BssECI	CCNNGG	5 cut(s)	402, 536, 556, 771, 904
BssMI	GATC	2 cut(s)	540, 882
BssNI	GRCGYC	1 cut(s)	298
BssT1I	CCWWGG	1 cut(s)	771
Bst2UI	CCWGG	1 cut(s)	537
Bst4CI	ACNGT	3 cut(s)	502, 560, 584
Bst6I	CTCTTC	3 cut(s)	6, 437, 678
BstACI	GRCGYC	1 cut(s)	298
BstBAI	YACGTR	2 cut(s)	661, 708
BstC8I	GCNNGC	3 cut(s)	228, 232, 911
BstDEI	CTNAG	3 cut(s)	596, 669, 914
BstDSI	CCRYGG	2 cut(s)	402, 556
BstEII	GGTNACC	1 cut(s)	697
BstF5I	GGATG	1 cut(s)	556
BstKTI	GATC	2 cut(s)	543, 885
BstMAI	GTCTC	1 cut(s)	442
BstMBI	GATC	2 cut(s)	540, 882
BstMWI	GCNNNNNNNGC	2 cut(s)	37, 404
BstNI	CCWGG	1 cut(s)	537
BstPI	GGTNACC	1 cut(s)	697
BstSCI	CCNGG	2 cut(s)	535, 693
BstSFI	CTRYAG	1 cut(s)	117
BstV1I	GCAGC	4 cut(s)	27, 40, 103, 578
BstX2I	RGATCY	1 cut(s)	540
BstYI	RGATCY	1 cut(s)	540
Bsu36I	CCTNAGG	1 cut(s)	596
BsuRI	GGCC	1 cut(s)	407
BtgI	CCRYGG	2 cut(s)	402, 556
BtsCI	GGATG	1 cut(s)	556
BtsIMutI	CAGTG	1 cut(s)	643
Cac8I	GCNNGC	3 cut(s)	228, 232, 911
Cfr13I	GGNCC	2 cut(s)	493, 533
Csp6I	GTAC	3 cut(s)	136, 290, 658
CviAII	CATG	2 cut(s)	568, 649
CviQI	GTAC	3 cut(s)	136, 290, 658
DdeI	CTNAG	3 cut(s)	596, 669, 914
DpnI	GATC	2 cut(s)	542, 884
DpnII	GATC	2 cut(s)	540, 882
EaeI	YGGCCR	1 cut(s)	405
Eam1104I	CTCTTC	3 cut(s)	6, 437, 678
EarI	CTCTTC	3 cut(s)	6, 437, 678
Eco130I	CCWWGG	1 cut(s)	771
Eco24I	GRGCYC	1 cut(s)	465
Eco47I	GGWCC	2 cut(s)	493, 533
Eco57I	CTGAAG	1 cut(s)	529
Eco72I	CACGTG	1 cut(s)	708
Eco81I	CCTNAGG	1 cut(s)	596
Eco91I	GGTNACC	1 cut(s)	697
EcoO65I	GGTNACC	1 cut(s)	697
EcoRII	CCWGG	1 cut(s)	535
EcoT14I	CCWWGG	1 cut(s)	771
EcoT22I	ATGCAT	1 cut(s)	173
EcoT38I	GRGCYC	1 cut(s)	465
ErhI	CCWWGG	1 cut(s)	771
Esp3I	CGTCTC	1 cut(s)	442
FaeI	CATG	2 cut(s)	571, 652
FaqI	GGGAC	3 cut(s)	431, 479, 546
FatI	CATG	2 cut(s)	567, 648
FauI	CCCGC	1 cut(s)	523
Fnu4HI	GCNGC	6 cut(s)	29, 41, 58, 117, 408, 592
FokI	GGATG	1 cut(s)	563
FriOI	GRGCYC	1 cut(s)	465
Fsp4HI	GCNGC	6 cut(s)	29, 41, 58, 117, 408, 592
FspBI	CTAG	5 cut(s)	72, 231, 330, 383, 798
GluI	GCNGC	6 cut(s)	29, 41, 58, 117, 408, 592
GsaI	CCCAGC	1 cut(s)	814
HaeIII	GGCC	1 cut(s)	407
HapII	CCGG	3 cut(s)	287, 695, 866
Hin1I	GRCGYC	1 cut(s)	298
Hin1II	CATG	2 cut(s)	571, 652
HindIII	AAGCTT	1 cut(s)	911
HinfI	GANTC	3 cut(s)	122, 163, 469
HpaII	CCGG	3 cut(s)	287, 695, 866
HphI	GGTGA	3 cut(s)	261, 709, 787
Hpy166II	GTNNAC	1 cut(s)	292
Hpy188I	TCNGA	2 cut(s)	451, 719
Hpy188III	TCNNGA	5 cut(s)	383, 496, 513, 736, 886
Hpy8I	GTNNAC	1 cut(s)	292
Hpy99I	CGWCG	4 cut(s)	300, 485, 502, 584
HpyAV	CCTTC	5 cut(s)	218, 247, 479, 519, 833
HpyCH4III	ACNGT	3 cut(s)	502, 560, 584
HpyCH4IV	ACGT	4 cut(s)	298, 660, 707, 786
HpyCH4V	TGCA	4 cut(s)	119, 171, 226, 571
HpyF10VI	GCNNNNNNNGC	2 cut(s)	37, 404
HpyF3I	CTNAG	3 cut(s)	596, 669, 914
HpySE526I	ACGT	4 cut(s)	298, 660, 707, 786
Hsp92I	GRCGYC	1 cut(s)	298
Hsp92II	CATG	2 cut(s)	571, 652
Kzo9I	GATC	2 cut(s)	540, 882
LguI	GCTCTTC	1 cut(s)	678
Lsp1109I	GCAGC	4 cut(s)	27, 40, 103, 578
LweI	GCATC	2 cut(s)	385, 729
MaeI	CTAG	5 cut(s)	72, 231, 330, 383, 798
MaeII	ACGT	4 cut(s)	298, 660, 707, 786
MaeIII	GTNAC	4 cut(s)	466, 584, 697, 919
MalI	GATC	2 cut(s)	542, 884
MboI	GATC	2 cut(s)	540, 882
MboII	GAAGA	6 cut(s)	17, 23, 424, 535, 695, 901
MflI	RGATCY	1 cut(s)	540
MhlI	GDGCHC	2 cut(s)	465, 690
MluCI	AATT	3 cut(s)	191, 366, 858
MlyI	GAGTC	1 cut(s)	463
MmeI	TCCRAC	2 cut(s)	742, 855
Mph1103I	ATGCAT	1 cut(s)	173
MseI	TTAA	3 cut(s)	189, 204, 621
MslI	CAYNNNNRTG	1 cut(s)	773
MspI	CCGG	3 cut(s)	287, 695, 866
MspR9I	CCNGG	2 cut(s)	537, 695
Mva1269I	GAATGC	1 cut(s)	410
MvaI	CCWGG	1 cut(s)	537
MwoI	GCNNNNNNNGC	2 cut(s)	37, 404
NciI	CCSGG	1 cut(s)	695
NdeII	GATC	2 cut(s)	540, 882
NheI	GCTAGC	1 cut(s)	230
NlaIII	CATG	2 cut(s)	571, 652
NlaIV	GGNNCC	4 cut(s)	77, 495, 534, 849
NmuCI	GTSAC	4 cut(s)	466, 584, 697, 919
NsiI	ATGCAT	1 cut(s)	173
OliI	CACNNNNGTG	1 cut(s)	773
PciSI	GCTCTTC	1 cut(s)	678
PcsI	WCGNNNNNNNCGW	1 cut(s)	399
PctI	GAATGC	1 cut(s)	410
PfeI	GAWTC	2 cut(s)	122, 163
PflMI	CCANNNNNTGG	1 cut(s)	708
PkrI	GCNGC	6 cut(s)	30, 42, 59, 118, 409, 593
PleI	GAGTC	1 cut(s)	463
PmaCI	CACGTG	1 cut(s)	708
PmlI	CACGTG	1 cut(s)	708
PpsI	GAGTC	1 cut(s)	463
Ppu21I	YACGTR	2 cut(s)	661, 708
Psp6I	CCWGG	1 cut(s)	535
PspCI	CACGTG	1 cut(s)	708
PspEI	GGTNACC	1 cut(s)	697
PspFI	CCCAGC	1 cut(s)	810
PspGI	CCWGG	1 cut(s)	535
PspN4I	GGNNCC	4 cut(s)	77, 495, 534, 849
PspPI	GGNCC	2 cut(s)	493, 533
PstI	CTGCAG	1 cut(s)	121
PsuI	RGATCY	1 cut(s)	540
RsaI	GTAC	3 cut(s)	137, 291, 659
RsaNI	GTAC	3 cut(s)	136, 290, 658
RseI	CAYNNNNRTG	1 cut(s)	773
SapI	GCTCTTC	1 cut(s)	678
SaqAI	TTAA	3 cut(s)	189, 204, 621
SatI	GCNGC	6 cut(s)	29, 41, 58, 117, 408, 592
Sau3AI	GATC	2 cut(s)	540, 882
Sau96I	GGNCC	2 cut(s)	493, 533
SchI	GAGTC	1 cut(s)	463
ScrFI	CCNGG	2 cut(s)	537, 695
SduI	GDGCHC	2 cut(s)	465, 690
SfaNI	GCATC	2 cut(s)	385, 729
SfcI	CTRYAG	1 cut(s)	117
SinI	GGWCC	2 cut(s)	493, 533
SmiMI	CAYNNNNRTG	1 cut(s)	773
SpeI	ACTAGT	2 cut(s)	329, 797
Sse9I	AATT	3 cut(s)	191, 366, 858
SsiI	CCGC	5 cut(s)	57, 60, 408, 491, 530
SspI	AATATT	1 cut(s)	261
SspMI	CTAG	5 cut(s)	72, 231, 330, 383, 798
StyD4I	CCNGG	2 cut(s)	535, 693
StyI	CCWWGG	1 cut(s)	771
TaaI	ACNGT	3 cut(s)	502, 560, 584
TaiI	ACGT	4 cut(s)	301, 663, 710, 789
TaqI	TCGA	6 cut(s)	393, 483, 563, 579, 612, 737
TasI	AATT	3 cut(s)	191, 366, 858
TauI	GCSGC	2 cut(s)	60, 410
TfiI	GAWTC	2 cut(s)	122, 163
Tru1I	TTAA	3 cut(s)	189, 204, 621
Tru9I	TTAA	3 cut(s)	189, 204, 621
TscAI	CASTG	1 cut(s)	643
TseFI	GTSAC	4 cut(s)	466, 584, 697, 919
TseI	GCWGC	4 cut(s)	28, 40, 116, 591
Tsp45I	GTSAC	4 cut(s)	466, 584, 697, 919
TspDTI	ATGAA	3 cut(s)	360, 637, 794
TspGWI	ACGGA	1 cut(s)	391
TspRI	CASTG	1 cut(s)	643
Van91I	CCANNNNNTGG	1 cut(s)	708
VpaK11BI	GGWCC	2 cut(s)	493, 533
XbaI	TCTAGA	1 cut(s)	382
XspI	CTAG	5 cut(s)	72, 231, 330, 383, 798
ZraI	GACGTC	1 cut(s)	299
Zsp2I	ATGCAT	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.