RchiOBHm_Chr2g0136091

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001225
Physical Location & Seq
Forward (+)
53346409 .. 53347869
1461 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50691

Sequence Viewer

Length: 378 bp
ATGTTGTTGTTTGGTGATGCCGGTCAAAAAGCAAAGGCCAACAAGGGTCTTCTTTTTCTTAAAGAAAATAGGAATCATTGGTGTACCACTCCCTCTTGTCGTCCAAGCACGAAGCTCTCAGCTGACTTTCTGTTCCCAGTGAACTCACCACCTCTGCAACTCAACCCATCAGAAGATCGTTATCGATCATCATGGCCGCCACCAACGAGCTCAGGGAAAGCTGGTCGTCAACACTCCAAAGCCTCGTCTCTGACCCGACGCCGGAGAACTTCGTATACACCTTCGCCGGCGATCTGGGCTTCTGCAAAGCTAGGGTACCTCGGGCCACGATTGAGCGAAGCCATCACCTCTGCACTCAACAAGAAACGGAGATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

13.86

Weight (kDa)

11.02

Isoelectric Point (pI)

74.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 315
AccB1I GGYRCC 1 cut(s) 315
AccI GTMKAC 1 cut(s) 275
AciI CCGC 1 cut(s) 197
AcoI YGGCCR 1 cut(s) 194
AcyI GRCGYC 1 cut(s) 259
AfaI GTAC 2 cut(s) 85, 317
AfiI CCNNNNNNNGG 1 cut(s) 261
AluBI AGCT 5 cut(s) 115, 122, 210, 221, 310
AluI AGCT 5 cut(s) 115, 122, 210, 221, 310
Alw21I GWGCWC 1 cut(s) 212
Alw26I GTCTC 1 cut(s) 252
Ama87I CYCGRG 1 cut(s) 320
AoxI GGCC 3 cut(s) 36, 194, 323
Asp718I GGTACC 1 cut(s) 315
AspS9I GGNCC 1 cut(s) 323
AsuHPI GGTGA 3 cut(s) 26, 138, 337
AvaI CYCGRG 1 cut(s) 320
BanI GGYRCC 1 cut(s) 315
BanII GRGCYC 1 cut(s) 212
BbsI GAAGAC 1 cut(s) 41
Bbv12I GWGCWC 1 cut(s) 212
BccI CCATC 2 cut(s) 175, 350
BcoDI GTCTC 1 cut(s) 252
BfaI CTAG 1 cut(s) 311
BisI GCNGC 1 cut(s) 197
BlsI GCNGC 1 cut(s) 198
BmeT110I CYCGRG 1 cut(s) 320
BmgT120I GGNCC 1 cut(s) 323
BmiI GGNNCC 1 cut(s) 317
BmrI ACTGGG 1 cut(s) 131
BmsI GCATC 1 cut(s) 7
BmuI ACTGGG 1 cut(s) 131
BpiI GAAGAC 1 cut(s) 41
Bpu10I CCTNAGC 1 cut(s) 211
Bsa29I ATCGAT 1 cut(s) 184
BsaBI GATNNNNATC 1 cut(s) 180
BsaHI GRCGYC 1 cut(s) 259
BsaJI CCNNGG 1 cut(s) 319
Bsc4I CCNNNNNNNGG 1 cut(s) 261
Bse118I RCCGGY 2 cut(s) 20, 286
Bse1I ACTGG 1 cut(s) 137
Bse8I GATNNNNATC 1 cut(s) 180
BseCI ATCGAT 1 cut(s) 184
BseDI CCNNGG 1 cut(s) 319
BseJI GATNNNNATC 1 cut(s) 180
BseLI CCNNNNNNNGG 1 cut(s) 261
BseMII CTCAG 2 cut(s) 132, 225
BseNI ACTGG 1 cut(s) 137
BsgI GTGCAG 1 cut(s) 336
BshFI GGCC 3 cut(s) 38, 196, 325
BshNI GGYRCC 1 cut(s) 315
BshVI ATCGAT 1 cut(s) 184
BsiHKAI GWGCWC 1 cut(s) 212
BsiHKCI CYCGRG 1 cut(s) 320
BsiSI CCGG 3 cut(s) 21, 262, 287
BslI CCNNNNNNNGG 1 cut(s) 261
BsmAI GTCTC 1 cut(s) 252
BsmBI CGTCTC 1 cut(s) 252
BsnI GGCC 3 cut(s) 38, 196, 325
BsoBI CYCGRG 1 cut(s) 320
Bsp1286I GDGCHC 1 cut(s) 212
Bsp143I GATC 4 cut(s) 175, 185, 291, 371
BspACI CCGC 1 cut(s) 197
BspANI GGCC 3 cut(s) 38, 196, 325
BspCNI CTCAG 2 cut(s) 131, 224
BspDI ATCGAT 1 cut(s) 184
BspHI TCATGA 1 cut(s) 374
BspLI GGNNCC 1 cut(s) 317
BspT107I GGYRCC 1 cut(s) 315
BsrFI RCCGGY 2 cut(s) 20, 286
BsrI ACTGG 1 cut(s) 137
BssAI RCCGGY 2 cut(s) 20, 286
BssECI CCNNGG 1 cut(s) 319
BssMI GATC 4 cut(s) 175, 185, 291, 371
BssNAI GTATAC 1 cut(s) 276
BssNI GRCGYC 1 cut(s) 259
Bst1107I GTATAC 1 cut(s) 276
BstACI GRCGYC 1 cut(s) 259
BstC8I GCNNGC 1 cut(s) 288
BstDEI CTNAG 2 cut(s) 118, 211
BstKTI GATC 4 cut(s) 178, 188, 294, 374
BstMAI GTCTC 1 cut(s) 252
BstMBI GATC 4 cut(s) 175, 185, 291, 371
BstMWI GCNNNNNNNGC 1 cut(s) 296
BstV2I GAAGAC 1 cut(s) 41
BstZ17I GTATAC 1 cut(s) 276
Bsu15I ATCGAT 1 cut(s) 184
BsuRI GGCC 3 cut(s) 38, 196, 325
BsuTUI ATCGAT 1 cut(s) 184
BtsIMutI CAGTG 1 cut(s) 144
Cac8I GCNNGC 1 cut(s) 288
CciI TCATGA 1 cut(s) 374
Cfr10I RCCGGY 2 cut(s) 20, 286
Cfr13I GGNCC 1 cut(s) 323
ClaI ATCGAT 1 cut(s) 184
CseI GACGC 1 cut(s) 267
Csp6I GTAC 2 cut(s) 84, 316
CviAII CATG 2 cut(s) 192, 375
CviQI GTAC 2 cut(s) 84, 316
DdeI CTNAG 2 cut(s) 118, 211
DpnI GATC 4 cut(s) 177, 187, 293, 373
DpnII GATC 4 cut(s) 175, 185, 291, 371
EaeI YGGCCR 1 cut(s) 194
Ecl136II GAGCTC 1 cut(s) 210
Eco24I GRGCYC 1 cut(s) 212
Eco53kI GAGCTC 1 cut(s) 210
Eco88I CYCGRG 1 cut(s) 320
EcoICRI GAGCTC 1 cut(s) 210
EcoT38I GRGCYC 1 cut(s) 212
Esp3I CGTCTC 1 cut(s) 252
FaeI CATG 2 cut(s) 195, 378
FaiI YATR 3 cut(s) 193, 276, 376
FatI CATG 2 cut(s) 191, 374
FblI GTMKAC 1 cut(s) 275
Fnu4HI GCNGC 1 cut(s) 197
FriOI GRGCYC 1 cut(s) 212
Fsp4HI GCNGC 1 cut(s) 197
FspBI CTAG 1 cut(s) 311
GluI GCNGC 1 cut(s) 197
HaeIII GGCC 3 cut(s) 38, 196, 325
HapII CCGG 3 cut(s) 21, 262, 287
HgaI GACGC 1 cut(s) 267
Hin1I GRCGYC 1 cut(s) 259
Hin1II CATG 2 cut(s) 195, 378
HincII GTYRAC 1 cut(s) 230
HindII GTYRAC 1 cut(s) 230
HinfI GANTC 1 cut(s) 73
HpaII CCGG 3 cut(s) 21, 262, 287
HphI GGTGA 3 cut(s) 26, 138, 337
Hpy166II GTNNAC 4 cut(s) 84, 142, 230, 276
Hpy188I TCNGA 2 cut(s) 172, 252
Hpy188III TCNNGA 1 cut(s) 375
Hpy8I GTNNAC 4 cut(s) 84, 142, 230, 276
Hpy99I CGWCG 1 cut(s) 261
HpyAV CCTTC 1 cut(s) 291
HpyCH4V TGCA 3 cut(s) 157, 305, 353
HpyF10VI GCNNNNNNNGC 1 cut(s) 296
HpyF3I CTNAG 2 cut(s) 118, 211
Hsp92I GRCGYC 1 cut(s) 259
Hsp92II CATG 2 cut(s) 195, 378
KpnI GGTACC 1 cut(s) 319
KroI GCCGGC 1 cut(s) 286
KroNI GCCGGC 1 cut(s) 288
Kzo9I GATC 4 cut(s) 175, 185, 291, 371
LpnPI CCDG 7 cut(s) 34, 150, 198, 207, 275, 280, 300
LweI GCATC 1 cut(s) 7
MaeI CTAG 1 cut(s) 311
MalI GATC 4 cut(s) 177, 187, 293, 373
MboI GATC 4 cut(s) 175, 185, 291, 371
MboII GAAGA 2 cut(s) 41, 185
MhlI GDGCHC 1 cut(s) 212
MnlI CCTC 5 cut(s) 103, 162, 253, 329, 358
MreI CGCCGGCG 1 cut(s) 286
MroNI GCCGGC 1 cut(s) 286
MseI TTAA 1 cut(s) 60
MspA1I CMGCKG 1 cut(s) 122
MspI CCGG 3 cut(s) 21, 262, 287
MwoI GCNNNNNNNGC 1 cut(s) 296
NaeI GCCGGC 1 cut(s) 288
NdeII GATC 4 cut(s) 175, 185, 291, 371
NgoMIV GCCGGC 1 cut(s) 286
NlaIII CATG 2 cut(s) 195, 378
NlaIV GGNNCC 1 cut(s) 317
PagI TCATGA 1 cut(s) 374
PdiI GCCGGC 1 cut(s) 288
PfeI GAWTC 1 cut(s) 73
PkrI GCNGC 1 cut(s) 198
Psp124BI GAGCTC 1 cut(s) 212
PspN4I GGNNCC 1 cut(s) 317
PspPI GGNCC 1 cut(s) 323
PsrI GAACNNNNNNTAC 2 cut(s) 259, 291
PvuII CAGCTG 1 cut(s) 122
RsaI GTAC 2 cut(s) 85, 317
RsaNI GTAC 2 cut(s) 84, 316
SacI GAGCTC 1 cut(s) 212
SaqAI TTAA 1 cut(s) 60
SatI GCNGC 1 cut(s) 197
Sau3AI GATC 4 cut(s) 175, 185, 291, 371
Sau96I GGNCC 1 cut(s) 323
SduI GDGCHC 1 cut(s) 212
SetI ASST 9 cut(s) 117, 124, 154, 212, 223, 283, 312, 321, 350
SfaNI GCATC 1 cut(s) 7
SgrAI CRCCGGYG 1 cut(s) 286
SsiI CCGC 1 cut(s) 197
SspMI CTAG 1 cut(s) 311
SstI GAGCTC 1 cut(s) 212
TaqI TCGA 1 cut(s) 184
TauI GCSGC 1 cut(s) 199
TfiI GAWTC 1 cut(s) 73
Tru1I TTAA 1 cut(s) 60
Tru9I TTAA 1 cut(s) 60
TscAI CASTG 1 cut(s) 144
TspRI CASTG 1 cut(s) 144
XmiI GTMKAC 1 cut(s) 275
XspI CTAG 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.