Rh3DG305500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0001225
Physical Location & Seq
Forward (+)
32421550 .. 32421963
414 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG305500.1

Sequence Viewer

Length: 414 bp
ATGGGTCTTCTTTTTCTTAAAGAAAATAGGAATCATTGGTGCACCACTCCCTCTTGTCGTCCAAGCACGAAGCTCTCAGCTCACTTTCTGTTCCCAGTGAACTCACCACCCAATCCACCGGTCAAGCAACCAAAACTCACCACCTCTGCAACTCAACCCATCAGAAGATCGTTATCGATCATCATGGCCGCCACCAACGAGCTCAGGGAAAGCTGGTCGTCAACACTCCAAAGCCTCGTCTCTGACCCGACGCCGGAGAACTTCGTATACACCTTCGCCGGCGATCTGGGCTTCTGCAAAGCTAGGGTACCTCCGGCCACGATTGAGCGAAGCCATCACCTCTGCACTCAACAAGAAACGGAGATCATGACCTCCGGCCACCACCTCTTAAGATCCACCGTCACTTTTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

15.32

Weight (kDa)

9.13

Isoelectric Point (pI)

71.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 307
AccB1I GGYRCC 1 cut(s) 307
AccI GTMKAC 1 cut(s) 267
AciI CCGC 1 cut(s) 189
AclWI GGATC 1 cut(s) 387
AcoI YGGCCR 3 cut(s) 186, 315, 376
AcyI GRCGYC 1 cut(s) 251
AfaI GTAC 1 cut(s) 309
AfiI CCNNNNNNNGG 1 cut(s) 253
AflII CTTAAG 1 cut(s) 388
AgeI ACCGGT 1 cut(s) 118
AluBI AGCT 5 cut(s) 73, 80, 202, 213, 302
AluI AGCT 5 cut(s) 73, 80, 202, 213, 302
Alw21I GWGCWC 2 cut(s) 44, 204
Alw26I GTCTC 1 cut(s) 244
Alw44I GTGCAC 1 cut(s) 40
AlwI GGATC 1 cut(s) 387
AoxI GGCC 3 cut(s) 186, 315, 376
ApaLI GTGCAC 1 cut(s) 40
AsiGI ACCGGT 1 cut(s) 118
Asp718I GGTACC 1 cut(s) 307
AsuHPI GGTGA 3 cut(s) 96, 130, 329
BaeGI GKGCMC 1 cut(s) 44
BanI GGYRCC 1 cut(s) 307
BanII GRGCYC 1 cut(s) 204
Bbv12I GWGCWC 2 cut(s) 44, 204
BccI CCATC 2 cut(s) 167, 342
BcoDI GTCTC 1 cut(s) 244
BfaI CTAG 1 cut(s) 303
BfrI CTTAAG 1 cut(s) 388
BisI GCNGC 1 cut(s) 189
BlsI GCNGC 1 cut(s) 190
BmiI GGNNCC 1 cut(s) 309
BmrI ACTGGG 1 cut(s) 89
BmuI ACTGGG 1 cut(s) 89
Bpu10I CCTNAGC 1 cut(s) 203
Bsa29I ATCGAT 1 cut(s) 176
BsaBI GATNNNNATC 1 cut(s) 172
BsaHI GRCGYC 1 cut(s) 251
BsaWI WCCGGW 1 cut(s) 118
Bsc4I CCNNNNNNNGG 1 cut(s) 253
Bse118I RCCGGY 2 cut(s) 118, 278
Bse1I ACTGG 1 cut(s) 95
Bse8I GATNNNNATC 1 cut(s) 172
BseCI ATCGAT 1 cut(s) 176
BseJI GATNNNNATC 1 cut(s) 172
BseLI CCNNNNNNNGG 1 cut(s) 253
BseMII CTCAG 2 cut(s) 90, 217
BseNI ACTGG 1 cut(s) 95
BseSI GKGCMC 1 cut(s) 44
BsgI GTGCAG 1 cut(s) 328
BshFI GGCC 3 cut(s) 188, 317, 378
BshNI GGYRCC 1 cut(s) 307
BshTI ACCGGT 1 cut(s) 118
BshVI ATCGAT 1 cut(s) 176
BsiHKAI GWGCWC 2 cut(s) 44, 204
BsiSI CCGG 5 cut(s) 119, 254, 279, 314, 375
BslI CCNNNNNNNGG 1 cut(s) 253
BsmAI GTCTC 1 cut(s) 244
BsmBI CGTCTC 1 cut(s) 244
BsnI GGCC 3 cut(s) 188, 317, 378
Bsp1286I GDGCHC 2 cut(s) 44, 204
Bsp143I GATC 5 cut(s) 167, 177, 283, 363, 392
BspACI CCGC 1 cut(s) 189
BspANI GGCC 3 cut(s) 188, 317, 378
BspCNI CTCAG 2 cut(s) 89, 216
BspDI ATCGAT 1 cut(s) 176
BspHI TCATGA 1 cut(s) 366
BspLI GGNNCC 1 cut(s) 309
BspPI GGATC 1 cut(s) 387
BspT107I GGYRCC 1 cut(s) 307
BspTI CTTAAG 1 cut(s) 388
BsrFI RCCGGY 2 cut(s) 118, 278
BsrI ACTGG 1 cut(s) 95
BssAI RCCGGY 2 cut(s) 118, 278
BssMI GATC 5 cut(s) 167, 177, 283, 363, 392
BssNAI GTATAC 1 cut(s) 268
BssNI GRCGYC 1 cut(s) 251
Bst1107I GTATAC 1 cut(s) 268
Bst4CI ACNGT 1 cut(s) 400
BstACI GRCGYC 1 cut(s) 251
BstAFI CTTAAG 1 cut(s) 388
BstC8I GCNNGC 1 cut(s) 280
BstDEI CTNAG 2 cut(s) 76, 203
BstKTI GATC 5 cut(s) 170, 180, 286, 366, 395
BstMAI GTCTC 1 cut(s) 244
BstMBI GATC 5 cut(s) 167, 177, 283, 363, 392
BstMWI GCNNNNNNNGC 1 cut(s) 288
BstSLI GKGCMC 1 cut(s) 44
BstX2I RGATCY 1 cut(s) 392
BstYI RGATCY 1 cut(s) 392
BstZ17I GTATAC 1 cut(s) 268
Bsu15I ATCGAT 1 cut(s) 176
BsuRI GGCC 3 cut(s) 188, 317, 378
BsuTUI ATCGAT 1 cut(s) 176
BtsIMutI CAGTG 1 cut(s) 102
Cac8I GCNNGC 1 cut(s) 280
CciI TCATGA 1 cut(s) 366
Cfr10I RCCGGY 2 cut(s) 118, 278
ClaI ATCGAT 1 cut(s) 176
CseI GACGC 1 cut(s) 259
Csp6I GTAC 1 cut(s) 308
CspAI ACCGGT 1 cut(s) 118
CviAII CATG 2 cut(s) 184, 367
CviQI GTAC 1 cut(s) 308
DdeI CTNAG 2 cut(s) 76, 203
DpnI GATC 5 cut(s) 169, 179, 285, 365, 394
DpnII GATC 5 cut(s) 167, 177, 283, 363, 392
EaeI YGGCCR 3 cut(s) 186, 315, 376
Ecl136II GAGCTC 1 cut(s) 202
Eco24I GRGCYC 1 cut(s) 204
Eco53kI GAGCTC 1 cut(s) 202
EcoICRI GAGCTC 1 cut(s) 202
EcoT38I GRGCYC 1 cut(s) 204
Esp3I CGTCTC 1 cut(s) 244
FaeI CATG 2 cut(s) 187, 370
FaiI YATR 3 cut(s) 185, 268, 368
FatI CATG 2 cut(s) 183, 366
FblI GTMKAC 1 cut(s) 267
Fnu4HI GCNGC 1 cut(s) 189
FriOI GRGCYC 1 cut(s) 204
Fsp4HI GCNGC 1 cut(s) 189
FspBI CTAG 1 cut(s) 303
GluI GCNGC 1 cut(s) 189
HaeIII GGCC 3 cut(s) 188, 317, 378
HapII CCGG 5 cut(s) 119, 254, 279, 314, 375
HgaI GACGC 1 cut(s) 259
Hin1I GRCGYC 1 cut(s) 251
Hin1II CATG 2 cut(s) 187, 370
HincII GTYRAC 1 cut(s) 222
HindII GTYRAC 1 cut(s) 222
HinfI GANTC 1 cut(s) 31
HpaII CCGG 5 cut(s) 119, 254, 279, 314, 375
HphI GGTGA 3 cut(s) 96, 130, 329
Hpy166II GTNNAC 4 cut(s) 42, 100, 222, 268
Hpy188I TCNGA 2 cut(s) 164, 244
Hpy188III TCNNGA 1 cut(s) 367
Hpy8I GTNNAC 4 cut(s) 42, 100, 222, 268
Hpy99I CGWCG 1 cut(s) 253
HpyAV CCTTC 1 cut(s) 283
HpyCH4III ACNGT 1 cut(s) 400
HpyCH4V TGCA 4 cut(s) 42, 149, 297, 345
HpyF10VI GCNNNNNNNGC 1 cut(s) 288
HpyF3I CTNAG 2 cut(s) 76, 203
Hsp92I GRCGYC 1 cut(s) 251
Hsp92II CATG 2 cut(s) 187, 370
KpnI GGTACC 1 cut(s) 311
KroI GCCGGC 1 cut(s) 278
KroNI GCCGGC 1 cut(s) 280
Kzo9I GATC 5 cut(s) 167, 177, 283, 363, 392
LpnPI CCDG 9 cut(s) 108, 132, 190, 199, 267, 272, 292, 327, 388
MaeI CTAG 1 cut(s) 303
MaeIII GTNAC 1 cut(s) 400
MalI GATC 5 cut(s) 169, 179, 285, 365, 394
MboI GATC 5 cut(s) 167, 177, 283, 363, 392
MboII GAAGA 1 cut(s) 177
MflI RGATCY 1 cut(s) 392
MhlI GDGCHC 2 cut(s) 44, 204
MnlI CCTC 7 cut(s) 61, 154, 245, 321, 350, 382, 395
MreI CGCCGGCG 1 cut(s) 278
MroNI GCCGGC 1 cut(s) 278
MseI TTAA 3 cut(s) 18, 389, 412
MspCI CTTAAG 1 cut(s) 388
MspI CCGG 5 cut(s) 119, 254, 279, 314, 375
MwoI GCNNNNNNNGC 1 cut(s) 288
NaeI GCCGGC 1 cut(s) 280
NdeII GATC 5 cut(s) 167, 177, 283, 363, 392
NgoMIV GCCGGC 1 cut(s) 278
NlaIII CATG 2 cut(s) 187, 370
NlaIV GGNNCC 1 cut(s) 309
NmuCI GTSAC 1 cut(s) 400
PagI TCATGA 1 cut(s) 366
PdiI GCCGGC 1 cut(s) 280
PfeI GAWTC 1 cut(s) 31
PinAI ACCGGT 1 cut(s) 118
PkrI GCNGC 1 cut(s) 190
Psp124BI GAGCTC 1 cut(s) 204
PspN4I GGNNCC 1 cut(s) 309
PsrI GAACNNNNNNTAC 2 cut(s) 251, 283
PsuI RGATCY 1 cut(s) 392
RsaI GTAC 1 cut(s) 309
RsaNI GTAC 1 cut(s) 308
SacI GAGCTC 1 cut(s) 204
SaqAI TTAA 3 cut(s) 18, 389, 412
SatI GCNGC 1 cut(s) 189
Sau3AI GATC 5 cut(s) 167, 177, 283, 363, 392
SduI GDGCHC 2 cut(s) 44, 204
SgrAI CRCCGGYG 1 cut(s) 278
SmlI CTYRAG 1 cut(s) 388
SmoI CTYRAG 1 cut(s) 388
SsiI CCGC 1 cut(s) 189
SspMI CTAG 1 cut(s) 303
SstI GAGCTC 1 cut(s) 204
TaaI ACNGT 1 cut(s) 400
TaqI TCGA 1 cut(s) 176
TauI GCSGC 1 cut(s) 191
TfiI GAWTC 1 cut(s) 31
Tru1I TTAA 3 cut(s) 18, 389, 412
Tru9I TTAA 3 cut(s) 18, 389, 412
TscAI CASTG 1 cut(s) 102
TseFI GTSAC 1 cut(s) 400
Tsp45I GTSAC 1 cut(s) 400
TspGWI ACGGA 1 cut(s) 374
TspRI CASTG 1 cut(s) 102
Vha464I CTTAAG 1 cut(s) 388
VneI GTGCAC 1 cut(s) 40
XmiI GTMKAC 1 cut(s) 267
XspI CTAG 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.