Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001225

Physical Location & Seq

Genomic Coordinates Reverse (-)

40241058 .. 40250050

Gene Structure 8993 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG205900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

ATGCAAGCCAATCCCTTCCGAGTCACTGCCAAATCAATATTCCCGTCACTGATAAACATACCTACGGTGCACCGACAGCACCGTTCTCCTTCTTTGCCACCCCTCCTCAAACCGCCATGTGCCATCTCCGCTTCTACTCCCAATGACGCCGAGAGTTCTACTCCAATTACCATGTCAACCCTAGAAGTTGTCGATGACTCCGTGGCTGCGTTCCGGGACTACCAGTTTCTCTTTGTCTCGCAACGCTCGGAAACAAACGAGCCAGTGACTCTACAAGTTGTTGAAGGTGCAGTCCCGCCAGAGTTTCCTTCCGGAACATATTACTTGACGGGACCGGGGCTCTTCAGAGACGACTACGGCTCAACGGTGCACCCTTTCGATGGTCACGGCTACCTTAGGGCTTTCACTTTCCATGGGGTCAATGGGAAAGAGGTCACTGTCATGTTCATGGCCAAGTATGTGAAAACTGAGGCGCAGTTGGAAGAGCACGACCCCGTGACCGGTACGTGGCGGTTCACGCATAGGGGAGCGTTCTCGGTGTTGAAGGGAGGACAGAAAGTCGGGAACACTATGGTGATCAAAAACGTGGCGAATACTTGTGTGTTGAGCTGGGGTGGGAGGCTGATGTGCTTGTGGGAAGGTGGTGGGGAACCTTACGAAATTGAAAAGGAGACCTTGGAAACTGTGGGGAAGGTCAAGCTCATGGAAGAAGATATGCTGTTGCCACACAATAATTTTACTTTTTATGAATTTGATTCAAATTTTAAGGAGGTGGGAAAGAAAGAGTTCATCATCCCAGATCACTTATTCATTCATGATTGGGCTTTCACAACCACTTATTATATACTATTTGCTAACCGCGTTAAACTTAATGTTTCTGGTGCAATGACTTCAGTTTGTGGAATCACTCCAGCGGTGACAGCATTATCTGTGAATCCTACCAAAGACACATCTCCAATATATTTGCTTCCTAGGTTTCCTAATGATGTGAATTGTAGTCGAGATTGGAGAGTACCAATTGAAGCTCCTTCACGATTTTGGCTGCAACATGTAGGCAATGCCTATGATTATTTGAATGAAAATGGGAATTCAGAGATCCAGATACATGCTTCTGTTTGCTCTTACGAGTGGTTCACTTTGCAAAAGTTGTTCGGATATGATTGGCAAAGTGGTAAACTCGACCCTTCGATTATGAACTTGGATAGAAACCAAAGCAAAAAATTGCCTCACCTTGTTCAGATCTCTCTCTCTCCTCTCTCTGGAATGCCCCCAGCCCCCCTCCGACGAACTCGATCGGGGTCTCTCCGACGCGGCCTTCTCCACTTCTCATTCCGGCGATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001763 GO:0003674 GO:0003824 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008300 GO:0008610 GO:0009056 GO:0009058 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010016 GO:0010033 GO:0010223 GO:0010346 GO:0010436 GO:0010817 GO:0016042 GO:0016106 GO:0016114 GO:0016119 GO:0016121 GO:0016491 GO:0016701 GO:0016702 GO:0018130 GO:0032501 GO:0032502 GO:0042214 GO:0042221 GO:0042445 GO:0042446 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0045549 GO:0046247 GO:0046483 GO:0048367 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051213 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901334 GO:1901336 GO:1901360 GO:1901362 GO:1901575 GO:1901576 GO:1901600 GO:1901601 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00906 map00906

Pfam Domains

Protein Families

RPE65

Protein Analysis

447

Amino Acids

50.39

Weight (kDa)

6.92

Isoelectric Point (pI)

42.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPE65	PF03055	79 - 418	1.3e-41	Retinal pigment epithelial membrane protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44990 AT2G44990 AT2G44990
fragaria_vesca	FvH4_7g10450
malus_domestica	MD07G1110600.v1.1
prunus_persica	Prupe.2G133900_v2.0.a1
pyrus_communis	pycom07g09530
rosa_chinensis	RchiOBHm_Chr1g0342921 RchiOBHm_Chr1g0342931 RchiOBHm_Chr1g0348141 RchiOBHm_Chr1g0348171 RchiOBHm_Chr1g0348201 RchiOBHm_Chr2g0136091 RchiOBHm_Chr7g0229961
rosa_laevigata	RLG00000028678 RLG00000028682 RLG00000028684 RLG00000028685 RLG00000028686
rosa_multiflora	Rmu_co8414565.1_g000001 Rmu_co8499605.1_g000001 Rmu_sc0001563.1_g000031 Rmu_sc0001890.1_g000013 Rmu_sc0001890.1_g000015 Rmu_sc0002209.1_g000017 Rmu_sc0003991.1_g000009 Rmu_sc0004502.1_g000011 Rmu_sc0004502.1_g000018 Rmu_sc0005046.1_g000018
rosa_roxburghii	Rroxscaffold_4G00307110 Rroxscaffold_4G00307160 Rroxscaffold_4G00307170 Rroxscaffold_4G00307180
rosa_rugosa	Rorug01G0145700.1 Rorug01G0192700 Rorug01G0192900 Rorug01G0193500
rosa_samantha	Rh1AG095900 Rh1AG210700 Rh1AG210800 Rh1BG176200 Rh1BG176800 Rh1BG177100 Rh1BG177200 Rh1CG195000 Rh1CG195100 Rh1DG205900 Rh1DG206300 Rh1DG206600 Rh1DG206700 Rh3DG305500
rosa_wichuraiana	Rw0G011410 Rw1G017570 Rw1G017580 Rw1G017590 Rw1G017800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	861, 1311
AccIII	TCCGGA	1 cut(s)	311
AciI	CCGC	7 cut(s)	113, 129, 296, 511, 859, 914, 1311
AclWI	GGATC	1 cut(s)	1090
AcoI	YGGCCR	1 cut(s)	450
AcsI	RAATTY	3 cut(s)	749, 760, 1087
AcuI	CTGAAG	2 cut(s)	328, 876
AcyI	GRCGYC	1 cut(s)	147
AfaI	GTAC	2 cut(s)	505, 1014
AfiI	CCNNNNNNNGG	4 cut(s)	380, 500, 507, 1259
AflIII	ACRYGT	1 cut(s)	1048
AgeI	ACCGGT	1 cut(s)	500
AgsI	TTSAA	6 cut(s)	284, 544, 665, 759, 1022, 1075
AhdI	GACNNNNNGTC	1 cut(s)	557
AjuI	GAANNNNNNNTTGG	2 cut(s)	23, 55
AleI	CACNNNNGTG	1 cut(s)	572
AluBI	AGCT	3 cut(s)	609, 700, 1025
AluI	AGCT	3 cut(s)	609, 700, 1025
Alw21I	GWGCWC	3 cut(s)	72, 372, 489
Alw26I	GTCTC	4 cut(s)	241, 342, 665, 1305
Alw44I	GTGCAC	2 cut(s)	68, 368
AlwI	GGATC	1 cut(s)	1090
Aor13HI	TCCGGA	1 cut(s)	311
AoxI	GGCC	2 cut(s)	450, 1312
ApaLI	GTGCAC	2 cut(s)	68, 368
ApeKI	GCWGC	2 cut(s)	206, 1042
ApoI	RAATTY	3 cut(s)	749, 760, 1087
AsiGI	ACCGGT	1 cut(s)	500
Asp700I	GAANNNNTTC	1 cut(s)	785
AspA2I	CCTAGG	1 cut(s)	971
AspLEI	GCGC	1 cut(s)	475
AspS9I	GGNCC	1 cut(s)	332
AsuC2I	CCSGG	2 cut(s)	215, 336
AsuHPI	GGTGA	3 cut(s)	586, 928, 1220
AvaII	GGWCC	1 cut(s)	332
AvrII	CCTAGG	1 cut(s)	971
AxyI	CCTNAGG	1 cut(s)	395
BaeGI	GKGCMC	2 cut(s)	72, 372
BalI	TGGCCA	1 cut(s)	452
BanII	GRGCYC	1 cut(s)	342
Bbv12I	GWGCWC	3 cut(s)	72, 372, 489
BbvI	GCAGC	2 cut(s)	193, 1029
BccI	CCATC	2 cut(s)	131, 374
BceAI	ACGGC	2 cut(s)	373, 403
BclI	TGATCA	1 cut(s)	576
BcnI	CCSGG	2 cut(s)	215, 336
BcoDI	GTCTC	4 cut(s)	241, 342, 665, 1305
BfaI	CTAG	2 cut(s)	182, 972
BglII	AGATCT	1 cut(s)	1239
BisI	GCNGC	3 cut(s)	207, 1043, 1312
BlnI	CCTAGG	1 cut(s)	971
BlsI	GCNGC	3 cut(s)	208, 1044, 1313
Bme1390I	CCNGG	2 cut(s)	215, 336
Bme18I	GGWCC	1 cut(s)	332
BmeRI	GACNNNNNGTC	1 cut(s)	557
BmgT120I	GGNCC	1 cut(s)	332
BmiI	GGNNCC	2 cut(s)	333, 651
BmrFI	CCNGG	2 cut(s)	215, 336
BplI	GAGNNNNNCTC	2 cut(s)	145, 177
BpmI	CTGGAG	1 cut(s)	894
BpuMI	CCSGG	2 cut(s)	215, 336
BsaAI	YACGTR	1 cut(s)	507
BsaHI	GRCGYC	1 cut(s)	147
BsaI	GGTCTC	2 cut(s)	665, 1305
BsaJI	CCNNGG	5 cut(s)	201, 335, 412, 675, 971
BsaWI	WCCGGW	2 cut(s)	311, 500
Bsc4I	CCNNNNNNNGG	4 cut(s)	380, 500, 507, 1259
Bse118I	RCCGGY	1 cut(s)	500
Bse1I	ACTGG	2 cut(s)	223, 263
Bse21I	CCTNAGG	1 cut(s)	395
Bse3DI	GCAATG	2 cut(s)	891, 1063
BseAI	TCCGGA	1 cut(s)	311
BseDI	CCNNGG	5 cut(s)	201, 335, 412, 675, 971
BseGI	GGATG	1 cut(s)	792
BseLI	CCNNNNNNNGG	4 cut(s)	380, 500, 507, 1259
BseMI	GCAATG	2 cut(s)	891, 1063
BseMII	CTCAG	1 cut(s)	459
BseNI	ACTGG	2 cut(s)	223, 263
BseRI	GAGGAG	2 cut(s)	95, 1242
BseSI	GKGCMC	2 cut(s)	72, 372
BseXI	GCAGC	2 cut(s)	193, 1029
BseYI	CCCAGC	2 cut(s)	609, 1270
BsgI	GTGCAG	1 cut(s)	309
Bsh1236I	CGCG	2 cut(s)	861, 1311
Bsh1285I	CGRYCG	1 cut(s)	1295
BshFI	GGCC	2 cut(s)	452, 1314
BshTI	ACCGGT	1 cut(s)	500
BsiEI	CGRYCG	1 cut(s)	1295
BsiHKAI	GWGCWC	3 cut(s)	72, 372, 489
BsiSI	CCGG	5 cut(s)	214, 312, 335, 501, 1333
BslFI	GGGAC	3 cut(s)	230, 278, 345
BslI	CCNNNNNNNGG	4 cut(s)	380, 500, 507, 1259
BsmAI	GTCTC	4 cut(s)	241, 342, 665, 1305
BsmBI	CGTCTC	1 cut(s)	342
BsmFI	GGGAC	3 cut(s)	230, 278, 345
BsmI	GAATGC	1 cut(s)	1269
BsnI	GGCC	2 cut(s)	452, 1314
Bso31I	GGTCTC	2 cut(s)	665, 1305
Bsp1286I	GDGCHC	4 cut(s)	72, 342, 372, 489
Bsp13I	TCCGGA	1 cut(s)	311
Bsp143I	GATC	5 cut(s)	576, 799, 1095, 1239, 1292
Bsp19I	CCATGG	1 cut(s)	412
BspACI	CCGC	7 cut(s)	113, 129, 296, 511, 859, 914, 1311
BspANI	GGCC	2 cut(s)	452, 1314
BspCNI	CTCAG	1 cut(s)	460
BspEI	TCCGGA	1 cut(s)	311
BspFNI	CGCG	2 cut(s)	861, 1311
BspHI	TCATGA	1 cut(s)	814
BspLI	GGNNCC	2 cut(s)	333, 651
BspPI	GGATC	1 cut(s)	1090
BspQI	GCTCTTC	2 cut(s)	347, 477
BspTNI	GGTCTC	2 cut(s)	665, 1305
BsrDI	GCAATG	2 cut(s)	891, 1063
BsrFI	RCCGGY	1 cut(s)	500
BsrI	ACTGG	2 cut(s)	223, 263
BssAI	RCCGGY	1 cut(s)	500
BssECI	CCNNGG	5 cut(s)	201, 335, 412, 675, 971
BssMI	GATC	5 cut(s)	576, 799, 1095, 1239, 1292
BssNI	GRCGYC	1 cut(s)	147
BssT1I	CCWWGG	3 cut(s)	412, 675, 971
Bst4CI	ACNGT	5 cut(s)	67, 83, 367, 439, 685
Bst6I	CTCTTC	2 cut(s)	347, 477
BstACI	GRCGYC	1 cut(s)	147
BstBAI	YACGTR	1 cut(s)	507
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	2 cut(s)	395, 468
BstDSI	CCRYGG	2 cut(s)	201, 412
BstF5I	GGATG	1 cut(s)	792
BstFNI	CGCG	2 cut(s)	861, 1311
BstHHI	GCGC	1 cut(s)	475
BstKTI	GATC	5 cut(s)	579, 802, 1098, 1242, 1295
BstMAI	GTCTC	4 cut(s)	241, 342, 665, 1305
BstMBI	GATC	5 cut(s)	576, 799, 1095, 1239, 1292
BstMCI	CGRYCG	1 cut(s)	1295
BstMWI	GCNNNNNNNGC	4 cut(s)	76, 128, 517, 920
BstNSI	RCATGY	2 cut(s)	1052, 1109
BstSCI	CCNGG	2 cut(s)	213, 334
BstSLI	GKGCMC	2 cut(s)	72, 372
BstUI	CGCG	2 cut(s)	861, 1311
BstV1I	GCAGC	2 cut(s)	193, 1029
BstX2I	RGATCY	2 cut(s)	1095, 1239
BstYI	RGATCY	2 cut(s)	1095, 1239
Bsu36I	CCTNAGG	1 cut(s)	395
BsuRI	GGCC	2 cut(s)	452, 1314
BtgI	CCRYGG	2 cut(s)	201, 412
BtsCI	GGATG	1 cut(s)	792
BtsI	GCAGTG	1 cut(s)	24
BtsIMutI	CAGTG	4 cut(s)	24, 47, 270, 435
Cac8I	GCNNGC	1 cut(s)	6
CciI	TCATGA	1 cut(s)	814
CfoI	GCGC	1 cut(s)	475
Cfr10I	RCCGGY	1 cut(s)	500
Cfr13I	GGNCC	1 cut(s)	332
CseI	GACGC	2 cut(s)	155, 1317
Csp6I	GTAC	2 cut(s)	504, 1013
CspAI	ACCGGT	1 cut(s)	500
CviAII	CATG	9 cut(s)	117, 172, 413, 442, 448, 703, 815, 1049, 1106
CviQI	GTAC	2 cut(s)	504, 1013
DdeI	CTNAG	2 cut(s)	395, 468
DpnI	GATC	5 cut(s)	578, 801, 1097, 1241, 1294
DpnII	GATC	5 cut(s)	576, 799, 1095, 1239, 1292
DriI	GACNNNNNGTC	1 cut(s)	557
EaeI	YGGCCR	1 cut(s)	450
Eam1104I	CTCTTC	2 cut(s)	347, 477
Eam1105I	GACNNNNNGTC	1 cut(s)	557
EarI	CTCTTC	2 cut(s)	347, 477
Eco130I	CCWWGG	3 cut(s)	412, 675, 971
Eco24I	GRGCYC	1 cut(s)	342
Eco31I	GGTCTC	2 cut(s)	665, 1305
Eco47I	GGWCC	1 cut(s)	332
Eco57I	CTGAAG	2 cut(s)	328, 876
Eco81I	CCTNAGG	1 cut(s)	395
EcoRI	GAATTC	1 cut(s)	1087
EcoT14I	CCWWGG	3 cut(s)	412, 675, 971
EcoT38I	GRGCYC	1 cut(s)	342
ErhI	CCWWGG	3 cut(s)	412, 675, 971
Esp3I	CGTCTC	1 cut(s)	342
FaeI	CATG	9 cut(s)	120, 175, 416, 445, 451, 706, 818, 1052, 1109
FalI	AAGNNNNNCTT	2 cut(s)	659, 691
FaqI	GGGAC	3 cut(s)	230, 278, 345
FatI	CATG	9 cut(s)	116, 171, 412, 441, 447, 702, 814, 1048, 1105
FauI	CCCGC	1 cut(s)	303
FbaI	TGATCA	1 cut(s)	576
Fnu4HI	GCNGC	3 cut(s)	207, 1043, 1312
FokI	GGATG	1 cut(s)	779
FriOI	GRGCYC	1 cut(s)	342
Fsp4HI	GCNGC	3 cut(s)	207, 1043, 1312
FspBI	CTAG	2 cut(s)	182, 972
GlaI	GCGC	1 cut(s)	474
GluI	GCNGC	3 cut(s)	207, 1043, 1312
GsaI	CCCAGC	2 cut(s)	613, 1274
GsuI	CTGGAG	1 cut(s)	894
HaeIII	GGCC	2 cut(s)	452, 1314
HapII	CCGG	5 cut(s)	214, 312, 335, 501, 1333
HgaI	GACGC	2 cut(s)	155, 1317
HhaI	GCGC	1 cut(s)	475
Hin1I	GRCGYC	1 cut(s)	147
Hin1II	CATG	9 cut(s)	120, 175, 416, 445, 451, 706, 818, 1052, 1109
Hin6I	GCGC	1 cut(s)	473
HinP1I	GCGC	1 cut(s)	473
HincII	GTYRAC	1 cut(s)	177
HindII	GTYRAC	1 cut(s)	177
HinfI	GANTC	7 cut(s)	21, 197, 268, 755, 903, 934, 1338
HpaII	CCGG	5 cut(s)	214, 312, 335, 501, 1333
HphI	GGTGA	3 cut(s)	586, 928, 1220
Hpy166II	GTNNAC	6 cut(s)	70, 177, 370, 516, 1134, 1175
Hpy188I	TCNGA	9 cut(s)	20, 250, 347, 1093, 1154, 1239, 1283, 1307, 1343
Hpy188III	TCNNGA	7 cut(s)	312, 562, 815, 1001, 1032, 1099, 1260
Hpy8I	GTNNAC	6 cut(s)	70, 177, 370, 516, 1134, 1175
Hpy99I	CGWCG	2 cut(s)	1287, 1311
HpyCH4III	ACNGT	5 cut(s)	67, 83, 367, 439, 685
HpyCH4IV	ACGT	2 cut(s)	506, 585
HpyCH4V	TGCA	7 cut(s)	4, 70, 290, 370, 884, 1045, 1141
HpyF10VI	GCNNNNNNNGC	4 cut(s)	76, 128, 517, 920
HpyF3I	CTNAG	2 cut(s)	395, 468
HpySE526I	ACGT	2 cut(s)	506, 585
Hsp92I	GRCGYC	1 cut(s)	147
Hsp92II	CATG	9 cut(s)	120, 175, 416, 445, 451, 706, 818, 1052, 1109
HspAI	GCGC	1 cut(s)	473
Kpn2I	TCCGGA	1 cut(s)	311
Ksp22I	TGATCA	1 cut(s)	576
Kzo9I	GATC	5 cut(s)	576, 799, 1095, 1239, 1292
LguI	GCTCTTC	2 cut(s)	347, 477
LmnI	GCTCC	2 cut(s)	527, 1030
Lsp1109I	GCAGC	2 cut(s)	193, 1029
MaeI	CTAG	2 cut(s)	182, 972
MaeII	ACGT	2 cut(s)	506, 585
MaeIII	GTNAC	7 cut(s)	22, 45, 265, 383, 433, 496, 916
MalI	GATC	5 cut(s)	578, 801, 1097, 1241, 1294
MboI	GATC	5 cut(s)	576, 799, 1095, 1239, 1292
MboII	GAAGA	4 cut(s)	334, 494, 719, 722
MfeI	CAATTG	1 cut(s)	1017
MflI	RGATCY	2 cut(s)	1095, 1239
MhlI	GDGCHC	4 cut(s)	72, 342, 372, 489
MlsI	TGGCCA	1 cut(s)	452
MluCI	AATT	9 cut(s)	165, 660, 733, 749, 760, 991, 1017, 1087, 1220
MluNI	TGGCCA	1 cut(s)	452
MlyI	GAGTC	3 cut(s)	30, 191, 262
MmeI	TCCRAC	3 cut(s)	459, 1306, 1330
Mox20I	TGGCCA	1 cut(s)	452
MroI	TCCGGA	1 cut(s)	311
MroXI	GAANNNNTTC	1 cut(s)	785
MscI	TGGCCA	1 cut(s)	452
MseI	TTAA	3 cut(s)	765, 864, 870
MslI	CAYNNNNRTG	3 cut(s)	440, 446, 572
Msp20I	TGGCCA	1 cut(s)	452
MspA1I	CMGCKG	1 cut(s)	914
MspI	CCGG	5 cut(s)	214, 312, 335, 501, 1333
MspR9I	CCNGG	2 cut(s)	215, 336
MunI	CAATTG	1 cut(s)	1017
Mva1269I	GAATGC	1 cut(s)	1269
MvnI	CGCG	2 cut(s)	861, 1311
MwoI	GCNNNNNNNGC	4 cut(s)	76, 128, 517, 920
NciI	CCSGG	2 cut(s)	215, 336
NcoI	CCATGG	1 cut(s)	412
NdeII	GATC	5 cut(s)	576, 799, 1095, 1239, 1292
NlaIII	CATG	9 cut(s)	120, 175, 416, 445, 451, 706, 818, 1052, 1109
NlaIV	GGNNCC	2 cut(s)	333, 651
NmeAIII	GCCGAG	1 cut(s)	175
NmuCI	GTSAC	7 cut(s)	22, 45, 265, 383, 433, 496, 916
NspI	RCATGY	2 cut(s)	1052, 1109
OliI	CACNNNNGTG	1 cut(s)	572
PagI	TCATGA	1 cut(s)	814
PciI	ACATGT	1 cut(s)	1048
PciSI	GCTCTTC	2 cut(s)	347, 477
PcsI	WCGNNNNNNNCGW	1 cut(s)	198
PctI	GAATGC	1 cut(s)	1269
PdmI	GAANNNNTTC	1 cut(s)	785
PfeI	GAWTC	4 cut(s)	755, 903, 934, 1338
PfoI	TCCNGGA	1 cut(s)	213
PinAI	ACCGGT	1 cut(s)	500
PkrI	GCNGC	3 cut(s)	208, 1044, 1313
Ple19I	CGATCG	1 cut(s)	1295
PleI	GAGTC	3 cut(s)	29, 191, 262
PpsI	GAGTC	3 cut(s)	29, 191, 262
Ppu21I	YACGTR	1 cut(s)	507
PscI	ACATGT	1 cut(s)	1048
PspFI	CCCAGC	2 cut(s)	609, 1270
PspN4I	GGNNCC	2 cut(s)	333, 651
PspPI	GGNCC	1 cut(s)	332
PsuI	RGATCY	2 cut(s)	1095, 1239
PvuI	CGATCG	1 cut(s)	1295
RsaI	GTAC	2 cut(s)	505, 1014
RsaNI	GTAC	2 cut(s)	504, 1013
RseI	CAYNNNNRTG	3 cut(s)	440, 446, 572
SapI	GCTCTTC	2 cut(s)	347, 477
SaqAI	TTAA	3 cut(s)	765, 864, 870
SatI	GCNGC	3 cut(s)	207, 1043, 1312
Sau3AI	GATC	5 cut(s)	576, 799, 1095, 1239, 1292
Sau96I	GGNCC	1 cut(s)	332
SchI	GAGTC	3 cut(s)	30, 191, 262
ScrFI	CCNGG	2 cut(s)	215, 336
SduI	GDGCHC	4 cut(s)	72, 342, 372, 489
SinI	GGWCC	1 cut(s)	332
SmiMI	CAYNNNNRTG	3 cut(s)	440, 446, 572
Sse9I	AATT	9 cut(s)	165, 660, 733, 749, 760, 991, 1017, 1087, 1220
SsiI	CCGC	7 cut(s)	113, 129, 296, 511, 859, 914, 1311
SspI	AATATT	1 cut(s)	39
SspMI	CTAG	2 cut(s)	182, 972
StyD4I	CCNGG	2 cut(s)	213, 334
StyI	CCWWGG	3 cut(s)	412, 675, 971
TaaI	ACNGT	5 cut(s)	67, 83, 367, 439, 685
TaiI	ACGT	2 cut(s)	509, 588
TaqI	TCGA	6 cut(s)	192, 378, 1000, 1179, 1187, 1291
TasI	AATT	9 cut(s)	165, 660, 733, 749, 760, 991, 1017, 1087, 1220
TauI	GCSGC	1 cut(s)	1314
TfiI	GAWTC	4 cut(s)	755, 903, 934, 1338
Tru1I	TTAA	3 cut(s)	765, 864, 870
Tru9I	TTAA	3 cut(s)	765, 864, 870
TscAI	CASTG	4 cut(s)	31, 54, 270, 442
TseFI	GTSAC	7 cut(s)	22, 45, 265, 383, 433, 496, 916
TseI	GCWGC	2 cut(s)	206, 1042
Tsp45I	GTSAC	7 cut(s)	22, 45, 265, 383, 433, 496, 916
TspDTI	ATGAA	7 cut(s)	436, 762, 778, 799, 803, 1092, 1208
TspGWI	ACGGA	1 cut(s)	190
TspRI	CASTG	4 cut(s)	31, 54, 270, 442
VneI	GTGCAC	2 cut(s)	68, 368
VpaK11BI	GGWCC	1 cut(s)	332
XapI	RAATTY	3 cut(s)	749, 760, 1087
XceI	RCATGY	2 cut(s)	1052, 1109
XcmI	CCANNNNNNNNNTGG	1 cut(s)	419
XmaJI	CCTAGG	1 cut(s)	971
XmnI	GAANNNNTTC	1 cut(s)	785
XspI	CTAG	2 cut(s)	182, 972

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.