Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0001225

Physical Location & Seq

Genomic Coordinates Forward (+)

12706059 .. 12712577

Gene Structure 6519 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1110600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1896 bp

ATGCTAGCTACTACCATTTCCTTTCATTGCCACCTCCTAAAACTACCAAAAATGCAAGCCAACCCCTTCCAAGTTATTCCCAAACTAATATTCCCCTCACTGATAAAGCTGCCTCCGGTTCACCGATCTCTGTCACCACCACCCACCAAGCCACCGCGTGCGATATCCATCTCCACGCCCGGTGAAACCGATCATGCTCCTATTATTTCATCAACCGTAGATGTTGTTGATGACTCAGTGGCTGCATTTTGGGACTACCAATTTCTCTTTGTGTCCCAACGCTCCGAACAAACTGAACCCATCACGCTCAGAGTCGTGGAGGGTTCGGTTCCACCGGACTTTCCCTCTGGCACATACTACTTGACAGGGCCGGGGCTCTTCAGCGACGACCATGGCTCGACGGTGCACCCATTAGACGGTCACGGATACCTTAGGGCTTTTCAGTTTGATGGCTTTGGCGGAGAAGTCAAGTTCATGGCTAAGTACGTGAAAACTGAGGCTCAAGTTGAAGAGCACGACCCTACGACTGACAGGTGGCGATTCACGCATAGGGGGCCGTTTTCGGTGTTGAAAGGTGGACAGAAAGTTGGGAATACTAAGGTTATGAAGAATGTGGCAAATACTAGTGTCTTGAGGTGGGGCCGGAAGCTGTTGTGCTTGTGGGAAGGTGGCAACCCATATGAGATTGAATCTGAGACGTTGGATACGGTAGGGAAGGTAAGTTTGATGGAAGGCTGTGATTCGGGGACAGAGAGTGGAGACGGTGGTGGTGGTGGAATGTGGGATGTGGCTGCGAGGTTGCTCAAACCGATTCTGTACGGAGTGTTTAAGATGCCTCCGAAGCGACTATTGTCTCATTATAAGCTCGATGCTCGCAACAACAGGCTTCTTATGGTGTCATGCAATGCAGAGGACATGCTATTACCTTGCAGTAATTTTACATTTTATGAATTTGATTCAGATTTCAAGGTGCTGGGAAAGCAAGAGTTCAACATCCCTGATCACTTGATGATCCACGATTGGGCTTTCACAGACACTCATTATATAATATTTGCTAATCGCATCAAGCTTGATGCTGTCGGTGCAATGACAGCAGTTTGCGGGGCTACTCCTATGATAACAGCATTGTCAGTGAACCCTAGCAAGTCCACATCTCCCATATATTTGCTTCCTCGGCCTAGTAATGAAAATGGCAGAGATTGGAGAGTGCCTATTGAAGCGTCTTCACAATTGTGGTTCCTACATGTATGCAATGCTTTTGAGAATTTGGATGAGAATGGGAATTTGGATATTCAAATCCATGCTTCTGCTTGCTCTTACGAGTGGTTCAATTTCCAGAAATTATTTGGATATGATTGGCAAAGTGGTAAACTAGACCCTTCGGTTATGAACATAAATGGAAGCCAAAGCAATCACTTGCCTCGTCTTATTCAGGTTTCCATCAACTTGGATAGCAACGGGAACTGTCAAAGATGTGATGTGGAGTCTTTAAACCAGTGGAACAAGTCATCAGATTTTCCAGTTATCAACCCAGCCTTTTCAGGTAGTAAGAACACATACATATATGCAGCAGCAACTTCAGGTTCTCGCAGTTCGTTGCCACACTTTCCATTTGACATGGTGGTGAAGCTAAATGCTGCATCTAAATCTGTGCTCACATGGTCTGTTGGTAGTCGAAAATTCATCGGAGAGCCTATTTTTATCCCCAAAGGCTCTGAAGAAGATGATGGCTACATTCTCGTAGTTGAGTATGCAGTTTCAGTTCAAAGGTGCTATCTAGTTATCTTAGATTCCAAGAAGATTGGAGGAGCTGATGCACTAGTAGCAAGACTTGAAGTCCCCAAGCACCTGAATTTCCCTCTTGGTTTTCATGGTTTCTGGGCCACTGCAGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001763 GO:0003674 GO:0003824 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008300 GO:0008610 GO:0009056 GO:0009058 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010016 GO:0010033 GO:0010223 GO:0010346 GO:0010436 GO:0010817 GO:0016042 GO:0016106 GO:0016114 GO:0016119 GO:0016121 GO:0016491 GO:0016701 GO:0016702 GO:0018130 GO:0032501 GO:0032502 GO:0042214 GO:0042221 GO:0042445 GO:0042446 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0045549 GO:0046247 GO:0046483 GO:0048367 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051213 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901334 GO:1901336 GO:1901360 GO:1901362 GO:1901575 GO:1901576 GO:1901600 GO:1901601 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00906 map00906

Pfam Domains

Protein Families

RPE65

Protein Analysis

632

Amino Acids

70.05

Weight (kDa)

6.18

Isoelectric Point (pI)

39.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPE65	PF03055	91 - 628	5.7e-92	Retinal pigment epithelial membrane protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44990 AT2G44990 AT2G44990
fragaria_vesca	FvH4_7g10450
malus_domestica	MD07G1110600.v1.1
prunus_persica	Prupe.2G133900_v2.0.a1
pyrus_communis	pycom07g09530
rosa_chinensis	RchiOBHm_Chr1g0342921 RchiOBHm_Chr1g0342931 RchiOBHm_Chr1g0348141 RchiOBHm_Chr1g0348171 RchiOBHm_Chr1g0348201 RchiOBHm_Chr2g0136091 RchiOBHm_Chr7g0229961
rosa_laevigata	RLG00000028678 RLG00000028682 RLG00000028684 RLG00000028685 RLG00000028686
rosa_multiflora	Rmu_co8414565.1_g000001 Rmu_co8499605.1_g000001 Rmu_sc0001563.1_g000031 Rmu_sc0001890.1_g000013 Rmu_sc0001890.1_g000015 Rmu_sc0002209.1_g000017 Rmu_sc0003991.1_g000009 Rmu_sc0004502.1_g000011 Rmu_sc0004502.1_g000018 Rmu_sc0005046.1_g000018
rosa_roxburghii	Rroxscaffold_4G00307110 Rroxscaffold_4G00307160 Rroxscaffold_4G00307170 Rroxscaffold_4G00307180
rosa_rugosa	Rorug01G0145700.1 Rorug01G0192700 Rorug01G0192900 Rorug01G0193500
rosa_samantha	Rh1AG095900 Rh1AG210700 Rh1AG210800 Rh1BG176200 Rh1BG176800 Rh1BG177100 Rh1BG177200 Rh1CG195000 Rh1CG195100 Rh1DG205900 Rh1DG206300 Rh1DG206600 Rh1DG206700 Rh3DG305500
rosa_wichuraiana	Rw0G011410 Rw1G017570 Rw1G017580 Rw1G017590 Rw1G017800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	861
AccII	CGCG	1 cut(s)	157
AciI	CCGC	3 cut(s)	155, 459, 1101
AclWI	GGATC	1 cut(s)	1006
AcsI	RAATTY	5 cut(s)	950, 1264, 1282, 1679, 1852
AcuI	CTGAAG	3 cut(s)	364, 1563, 1737
AdeI	CACNNNGTG	1 cut(s)	158
AfaI	GTAC	2 cut(s)	485, 818
AfiI	CCNNNNNNNGG	2 cut(s)	416, 1021
AflIII	ACRYGT	1 cut(s)	1243
AhdI	GACNNNNNGTC	1 cut(s)	1835
AhlI	ACTAGT	2 cut(s)	623, 1819
AjuI	GAANNNNNNNTTGG	4 cut(s)	74, 106, 1268, 1300
AleI	CACNNNNGTG	1 cut(s)	1231
AluBI	AGCT	7 cut(s)	8, 109, 649, 865, 1069, 1630, 1811
AluI	AGCT	7 cut(s)	8, 109, 649, 865, 1069, 1630, 1811
Alw21I	GWGCWC	3 cut(s)	408, 516, 1656
Alw26I	GTCTC	3 cut(s)	689, 753, 858
Alw44I	GTGCAC	1 cut(s)	404
AlwI	GGATC	1 cut(s)	1006
AlwNI	CAGNNNCTG	1 cut(s)	242
AoxI	GGCC	5 cut(s)	368, 554, 640, 1175, 1881
ApaLI	GTGCAC	1 cut(s)	404
ApeKI	GCWGC	7 cut(s)	109, 242, 791, 1568, 1571, 1637, 1889
ApoI	RAATTY	5 cut(s)	950, 1264, 1282, 1679, 1852
AspS9I	GGNCC	4 cut(s)	368, 554, 640, 1881
AsuC2I	CCSGG	2 cut(s)	180, 372
AsuHPI	GGTGA	4 cut(s)	113, 126, 194, 1636
AsuNHI	GCTAGC	1 cut(s)	4
AxyI	CCTNAGG	1 cut(s)	431
BaeGI	GKGCMC	1 cut(s)	408
BanII	GRGCYC	1 cut(s)	378
BbsI	GAAGAC	1 cut(s)	1215
Bbv12I	GWGCWC	3 cut(s)	408, 516, 1656
BbvI	GCAGC	6 cut(s)	96, 229, 778, 1580, 1583, 1624
BccI	CCATC	6 cut(s)	176, 308, 443, 721, 1448, 1721
BceAI	ACGGC	1 cut(s)	541
BciVI	GTATCC	2 cut(s)	419, 697
BclI	TGATCA	1 cut(s)	1000
BcnI	CCSGG	2 cut(s)	180, 372
BcoDI	GTCTC	3 cut(s)	689, 753, 858
BcuI	ACTAGT	2 cut(s)	623, 1819
BfaI	CTAG	7 cut(s)	5, 624, 1140, 1179, 1373, 1778, 1820
BfmI	CTRYAG	1 cut(s)	1887
BfuI	GTATCC	2 cut(s)	419, 697
BisI	GCNGC	7 cut(s)	110, 243, 792, 1569, 1572, 1638, 1890
BlsI	GCNGC	7 cut(s)	111, 244, 793, 1570, 1573, 1639, 1891
Bme1390I	CCNGG	2 cut(s)	180, 372
BmeRI	GACNNNNNGTC	1 cut(s)	1835
BmgT120I	GGNCC	4 cut(s)	368, 554, 640, 1881
BmiI	GGNNCC	4 cut(s)	330, 555, 641, 1238
BmrFI	CCNGG	2 cut(s)	180, 372
BmsI	GCATC	6 cut(s)	822, 859, 1063, 1071, 1649, 1804
BmtI	GCTAGC	1 cut(s)	8
BoxI	GACNNNNGTC	1 cut(s)	850
BpiI	GAAGAC	1 cut(s)	1215
BpuEI	CTTGAG	2 cut(s)	486, 652
BpuMI	CCSGG	2 cut(s)	180, 372
BsaAI	YACGTR	1 cut(s)	487
BsaBI	GATNNNNATC	1 cut(s)	167
BsaJI	CCNNGG	3 cut(s)	371, 391, 1172
BsaWI	WCCGGW	2 cut(s)	115, 334
Bsc4I	CCNNNNNNNGG	2 cut(s)	416, 1021
Bse1I	ACTGG	2 cut(s)	1495, 1520
Bse21I	CCTNAGG	1 cut(s)	431
Bse3DI	GCAATG	4 cut(s)	25, 910, 1092, 1258
Bse8I	GATNNNNATC	1 cut(s)	167
BseDI	CCNNGG	3 cut(s)	371, 391, 1172
BseGI	GGATG	3 cut(s)	790, 993, 1276
BseJI	GATNNNNATC	1 cut(s)	167
BseLI	CCNNNNNNNGG	2 cut(s)	416, 1021
BseMI	GCAATG	4 cut(s)	25, 910, 1092, 1258
BseMII	CTCAG	4 cut(s)	249, 322, 486, 684
BseNI	ACTGG	2 cut(s)	1495, 1520
BseRI	GAGGAG	1 cut(s)	1821
BseSI	GKGCMC	1 cut(s)	408
BseXI	GCAGC	6 cut(s)	96, 229, 778, 1580, 1583, 1624
BseYI	CCCAGC	2 cut(s)	973, 1531
Bsh1236I	CGCG	1 cut(s)	157
BshFI	GGCC	5 cut(s)	370, 556, 642, 1177, 1883
BsiHKAI	GWGCWC	3 cut(s)	408, 516, 1656
BsiSI	CCGG	5 cut(s)	116, 180, 335, 371, 643
BslFI	GGGAC	4 cut(s)	259, 266, 760, 1823
BslI	CCNNNNNNNGG	2 cut(s)	416, 1021
BsmAI	GTCTC	3 cut(s)	689, 753, 858
BsmBI	CGTCTC	2 cut(s)	689, 753
BsmFI	GGGAC	4 cut(s)	259, 266, 760, 1823
BsnI	GGCC	5 cut(s)	370, 556, 642, 1177, 1883
Bsp1286I	GDGCHC	4 cut(s)	378, 408, 516, 1656
Bsp143I	GATC	4 cut(s)	125, 190, 1000, 1011
Bsp19I	CCATGG	1 cut(s)	391
BspACI	CCGC	3 cut(s)	155, 459, 1101
BspANI	GGCC	5 cut(s)	370, 556, 642, 1177, 1883
BspCNI	CTCAG	4 cut(s)	248, 321, 487, 685
BspFNI	CGCG	1 cut(s)	157
BspLI	GGNNCC	4 cut(s)	330, 555, 641, 1238
BspMAI	CTGCAG	1 cut(s)	1891
BspOI	GCTAGC	1 cut(s)	8
BspPI	GGATC	1 cut(s)	1006
BspQI	GCTCTTC	2 cut(s)	383, 504
BsrDI	GCAATG	4 cut(s)	25, 910, 1092, 1258
BsrI	ACTGG	2 cut(s)	1495, 1520
BssECI	CCNNGG	3 cut(s)	371, 391, 1172
BssMI	GATC	4 cut(s)	125, 190, 1000, 1011
BssT1I	CCWWGG	1 cut(s)	391
Bst4CI	ACNGT	6 cut(s)	217, 403, 419, 709, 764, 1466
Bst6I	CTCTTC	2 cut(s)	383, 504
BstBAI	YACGTR	1 cut(s)	487
BstC8I	GCNNGC	5 cut(s)	6, 57, 159, 874, 1312
BstDEI	CTNAG	8 cut(s)	235, 308, 431, 480, 495, 597, 693, 1786
BstDSI	CCRYGG	1 cut(s)	391
BstF5I	GGATG	3 cut(s)	790, 993, 1276
BstFNI	CGCG	1 cut(s)	157
BstKTI	GATC	4 cut(s)	128, 193, 1003, 1014
BstMAI	GTCTC	3 cut(s)	689, 753, 858
BstMBI	GATC	4 cut(s)	125, 190, 1000, 1011
BstMWI	GCNNNNNNNGC	9 cut(s)	544, 553, 841, 979, 1082, 1091, 1174, 1823, 1889
BstNSI	RCATGY	2 cut(s)	919, 1247
BstPAI	GACNNNNGTC	1 cut(s)	850
BstSCI	CCNGG	2 cut(s)	178, 370
BstSFI	CTRYAG	1 cut(s)	1887
BstSLI	GKGCMC	1 cut(s)	408
BstUI	CGCG	1 cut(s)	157
BstV1I	GCAGC	6 cut(s)	96, 229, 778, 1580, 1583, 1624
BstV2I	GAAGAC	1 cut(s)	1215
BstXI	CCANNNNNNTGG	1 cut(s)	1447
Bsu36I	CCTNAGG	1 cut(s)	431
BsuI	GTATCC	2 cut(s)	419, 697
BsuRI	GGCC	5 cut(s)	370, 556, 642, 1177, 1883
BtgI	CCRYGG	1 cut(s)	391
BtsCI	GGATG	3 cut(s)	790, 993, 1276
BtsI	GCAGTG	1 cut(s)	1884
BtsIMutI	CAGTG	5 cut(s)	98, 243, 1137, 1502, 1884
Cac8I	GCNNGC	5 cut(s)	6, 57, 159, 874, 1312
CaiI	CAGNNNCTG	1 cut(s)	242
Cfr13I	GGNCC	4 cut(s)	368, 554, 640, 1881
CseI	GACGC	1 cut(s)	1209
Csp6I	GTAC	2 cut(s)	484, 817
CviQI	GTAC	2 cut(s)	484, 817
DdeI	CTNAG	8 cut(s)	235, 308, 431, 480, 495, 597, 693, 1786
DpnI	GATC	4 cut(s)	127, 192, 1002, 1013
DpnII	GATC	4 cut(s)	125, 190, 1000, 1011
DraI	TTTAAA	1 cut(s)	1491
DraIII	CACNNNGTG	1 cut(s)	158
DriI	GACNNNNNGTC	1 cut(s)	1835
Eam1104I	CTCTTC	2 cut(s)	383, 504
Eam1105I	GACNNNNNGTC	1 cut(s)	1835
EarI	CTCTTC	2 cut(s)	383, 504
EciI	GGCGGA	1 cut(s)	474
Eco130I	CCWWGG	1 cut(s)	391
Eco24I	GRGCYC	1 cut(s)	378
Eco32I	GATATC	1 cut(s)	165
Eco57I	CTGAAG	3 cut(s)	364, 1563, 1737
Eco81I	CCTNAGG	1 cut(s)	431
EcoRV	GATATC	1 cut(s)	165
EcoT14I	CCWWGG	1 cut(s)	391
EcoT38I	GRGCYC	1 cut(s)	378
ErhI	CCWWGG	1 cut(s)	391
Esp3I	CGTCTC	2 cut(s)	689, 753
FaqI	GGGAC	4 cut(s)	259, 266, 760, 1823
FauI	CCCGC	1 cut(s)	1094
FauNDI	CATATG	1 cut(s)	679
FbaI	TGATCA	1 cut(s)	1000
Fnu4HI	GCNGC	7 cut(s)	110, 243, 792, 1569, 1572, 1638, 1890
FokI	GGATG	3 cut(s)	797, 980, 1283
FriOI	GRGCYC	1 cut(s)	378
Fsp4HI	GCNGC	7 cut(s)	110, 243, 792, 1569, 1572, 1638, 1890
FspBI	CTAG	7 cut(s)	5, 624, 1140, 1179, 1373, 1778, 1820
GluI	GCNGC	7 cut(s)	110, 243, 792, 1569, 1572, 1638, 1890
GsaI	CCCAGC	2 cut(s)	977, 1535
HaeIII	GGCC	5 cut(s)	370, 556, 642, 1177, 1883
HapII	CCGG	5 cut(s)	116, 180, 335, 371, 643
HgaI	GACGC	1 cut(s)	1209
HindIII	AAGCTT	1 cut(s)	1067
HinfI	GANTC	9 cut(s)	233, 312, 540, 689, 740, 811, 956, 1484, 1790
HpaII	CCGG	5 cut(s)	116, 180, 335, 371, 643
HphI	GGTGA	4 cut(s)	113, 126, 194, 1636
Hpy166II	GTNNAC	6 cut(s)	121, 406, 578, 1135, 1149, 1370
Hpy188I	TCNGA	8 cut(s)	286, 311, 694, 840, 961, 1513, 1688, 1717
Hpy188III	TCNNGA	2 cut(s)	631, 1336
Hpy8I	GTNNAC	6 cut(s)	121, 406, 578, 1135, 1149, 1370
Hpy99I	CGWCG	2 cut(s)	389, 403
HpyAV	CCTTC	5 cut(s)	76, 659, 709, 725, 1389
HpyCH4III	ACNGT	6 cut(s)	217, 403, 419, 709, 764, 1466
HpyCH4IV	ACGT	2 cut(s)	486, 698
HpyF10VI	GCNNNNNNNGC	9 cut(s)	544, 553, 841, 979, 1082, 1091, 1174, 1823, 1889
HpyF3I	CTNAG	8 cut(s)	235, 308, 431, 480, 495, 597, 693, 1786
HpySE526I	ACGT	2 cut(s)	486, 698
Ksp22I	TGATCA	1 cut(s)	1000
Kzo9I	GATC	4 cut(s)	125, 190, 1000, 1011
LguI	GCTCTTC	2 cut(s)	383, 504
LmnI	GCTCC	3 cut(s)	202, 287, 1808
Lsp1109I	GCAGC	6 cut(s)	96, 229, 778, 1580, 1583, 1624
LweI	GCATC	6 cut(s)	822, 859, 1063, 1071, 1649, 1804
MaeI	CTAG	7 cut(s)	5, 624, 1140, 1179, 1373, 1778, 1820
MaeII	ACGT	2 cut(s)	486, 698
MaeIII	GTNAC	2 cut(s)	132, 419
MalI	GATC	4 cut(s)	127, 192, 1002, 1013
MboI	GATC	4 cut(s)	125, 190, 1000, 1011
MboII	GAAGA	7 cut(s)	370, 521, 619, 1215, 1730, 1733, 1810
MfeI	CAATTG	1 cut(s)	1229
MhlI	GDGCHC	4 cut(s)	378, 408, 516, 1656
MlyI	GAGTC	3 cut(s)	227, 321, 1493
MmeI	TCCRAC	1 cut(s)	681
MseI	TTAA	2 cut(s)	828, 1490
MslI	CAYNNNNRTG	2 cut(s)	1231, 1622
MspI	CCGG	5 cut(s)	116, 180, 335, 371, 643
MspR9I	CCNGG	2 cut(s)	180, 372
MunI	CAATTG	1 cut(s)	1229
MvnI	CGCG	1 cut(s)	157
MwoI	GCNNNNNNNGC	9 cut(s)	544, 553, 841, 979, 1082, 1091, 1174, 1823, 1889
NciI	CCSGG	2 cut(s)	180, 372
NcoI	CCATGG	1 cut(s)	391
NdeI	CATATG	1 cut(s)	679
NdeII	GATC	4 cut(s)	125, 190, 1000, 1011
NheI	GCTAGC	1 cut(s)	4
NlaIV	GGNNCC	4 cut(s)	330, 555, 641, 1238
NmeAIII	GCCGAG	1 cut(s)	1153
NmuCI	GTSAC	2 cut(s)	132, 419
NspI	RCATGY	2 cut(s)	919, 1247
OliI	CACNNNNGTG	1 cut(s)	1231
PciI	ACATGT	1 cut(s)	1243
PciSI	GCTCTTC	2 cut(s)	383, 504
PfeI	GAWTC	6 cut(s)	540, 689, 740, 811, 956, 1790
PkrI	GCNGC	7 cut(s)	111, 244, 793, 1570, 1573, 1639, 1891
PleI	GAGTC	3 cut(s)	227, 320, 1492
PpsI	GAGTC	3 cut(s)	227, 320, 1492
Ppu21I	YACGTR	1 cut(s)	487
PscI	ACATGT	1 cut(s)	1243
PshAI	GACNNNNGTC	1 cut(s)	850
PsiI	TTATAA	1 cut(s)	861
PspFI	CCCAGC	2 cut(s)	973, 1531
PspN4I	GGNNCC	4 cut(s)	330, 555, 641, 1238
PspPI	GGNCC	4 cut(s)	368, 554, 640, 1881
PstI	CTGCAG	1 cut(s)	1891
PstNI	CAGNNNCTG	1 cut(s)	242
RsaI	GTAC	2 cut(s)	485, 818
RsaNI	GTAC	2 cut(s)	484, 817
RseI	CAYNNNNRTG	2 cut(s)	1231, 1622
SapI	GCTCTTC	2 cut(s)	383, 504
SaqAI	TTAA	2 cut(s)	828, 1490
SatI	GCNGC	7 cut(s)	110, 243, 792, 1569, 1572, 1638, 1890
Sau3AI	GATC	4 cut(s)	125, 190, 1000, 1011
Sau96I	GGNCC	4 cut(s)	368, 554, 640, 1881
SchI	GAGTC	3 cut(s)	227, 321, 1493
ScrFI	CCNGG	2 cut(s)	180, 372
SduI	GDGCHC	4 cut(s)	378, 408, 516, 1656
SfaNI	GCATC	6 cut(s)	822, 859, 1063, 1071, 1649, 1804
SfcI	CTRYAG	1 cut(s)	1887
SmiMI	CAYNNNNRTG	2 cut(s)	1231, 1622
SmlI	CTYRAG	2 cut(s)	501, 631
SmoI	CTYRAG	2 cut(s)	501, 631
SpeI	ACTAGT	2 cut(s)	623, 1819
SsiI	CCGC	3 cut(s)	155, 459, 1101
SspI	AATATT	2 cut(s)	90, 1050
SspMI	CTAG	7 cut(s)	5, 624, 1140, 1179, 1373, 1778, 1820
StyD4I	CCNGG	2 cut(s)	178, 370
StyI	CCWWGG	1 cut(s)	391
TaaI	ACNGT	6 cut(s)	217, 403, 419, 709, 764, 1466
TaiI	ACGT	2 cut(s)	489, 701
TaqI	TCGA	3 cut(s)	398, 867, 1675
TfiI	GAWTC	6 cut(s)	540, 689, 740, 811, 956, 1790
Tru1I	TTAA	2 cut(s)	828, 1490
Tru9I	TTAA	2 cut(s)	828, 1490
TscAI	CASTG	5 cut(s)	105, 243, 1137, 1502, 1891
TseFI	GTSAC	2 cut(s)	132, 419
TseI	GCWGC	7 cut(s)	109, 242, 791, 1568, 1571, 1637, 1889
Tsp45I	GTSAC	2 cut(s)	132, 419
TspDTI	ATGAA	9 cut(s)	14, 198, 463, 620, 963, 1200, 1403, 1672, 1859
TspGWI	ACGGA	2 cut(s)	438, 834
TspRI	CASTG	5 cut(s)	105, 243, 1137, 1502, 1891
VneI	GTGCAC	1 cut(s)	404
XapI	RAATTY	5 cut(s)	950, 1264, 1282, 1679, 1852
XceI	RCATGY	2 cut(s)	919, 1247
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1343
XspI	CTAG	7 cut(s)	5, 624, 1140, 1179, 1373, 1778, 1820

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.