Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001225

Physical Location & Seq

Genomic Coordinates Reverse (-)

26266827 .. 26273551

Gene Structure 6725 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028684

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1875 bp

ATGCTAGCCAATCCCTTCCGATTCACTGCCAAATCAATATTCCCGTCACCGATAAACATACCAACGGTGCACCAACAACACCATTCTCCTTCTCTGCCACCCCTCCTCAAACCGCCATGTGCCATCTCCGCTTCTACTCCCAATGACGCCGAGAGTTCTACTCCAATTACCATGTTAACCCTAGAAGTTGTCGATGACTCCGTGGCTGCGTTCAGGGACTACCAGTTTCTCTTTGCCTCACAACGCTCGGAAACAAACGAGCCAGTGACTCTACAAGTTGTTGAAGGTGCAGTCCCACCAGAGTTTCCTTCCGGAACATATTACTTGACGGGACCAGGGCTCTTCAGAGACGACCATGGCTCGACGGTGCACCCTTTGGATGGTCACGGCTACCTTAGGGCTTTCACTTTCGATGGGGTTAGTGGGAAAGAGGTCAATGTCAAGTTCATGGCCAAGTATGTGAAAACTGAGGCGCAGTTGGAAGAGCACGACCCCGTGACTGGTACGTGGCGGTTCACGCATGGGGGAGCATTCTCGGTGTTGAAGGGAGGACAGAAAGTCAAGAAAACTAAGTTGATCAAAAACGTGGCGAATACTTGTGTGTTGAGCTGGGGTGGGAGGCTGATGTGCTTGTGGGAAGGAGGTGGGGAACCTTACGAAATTGAAAAGGAGACCTTGGAAACTGTCGGGAAGGTCAAGCTCATGGAAGGTTGTGATCCGGTGGTGGAGAGTGGGAGTGATGGCCGTGGTGTTTGGGATGTTGCTGCAAGATTGTTGAAGCCGATTTTGTATGGAGTGTTTAAGAGGCCAGCAAAGCGACTGTTAGCTCATTACAAGCTCGACACTCACAAAGATAGACTTCTTATGATGTCATGTAATACAGAAGATATACTGTTGCCACACAATACTTTTACATTTTATGAATTTGATTCAAATTTTAAGGAGGTGGGAAAGAAAGAGTTCATCATCCCAGATCACGTGTTGATTCATGATTGGGCTTTCACAACCAGTTATTATATACTATTTTCTAACCGCGTTAAACTTAATGTTTCTGGTGCAATGACTTCAGTTTGTGGAATCACTCCAACGATGACAGCATTATCTGTGAATCCTACTAAGGACACATCTCCAATATATTTGCTTCCTAGGTTTCCTAATGATCTGAATTGTAGTCGAGATTGGAGAGTGCCTATTGAAGCTCCTTCACGATTTTGGCTGCAACATGTAGGCAATGCCTATGATTATTTGGATGAAAATGGGAATTCGGAGATCCAGATACATGCTTCTGTTTGCTCTTACGAGTGGTTCACTTTGCAAAAGTTGTTTGGATATGATTGGCGAAGTGGTAAACTCGACCCTTCGATTATGAACTTGGGTAGAAACCACAGCAAAACATTGCCTCACCTTGTTCAGGTTTCCATCAACTTGGATGTCCACGGGATTTGTCAAAGATGTGATGTGGAGCCTTTGAACGAGTGGAACAAGTCATCAGATTTTCCTGTTATCAATCCAGCATTTTTAGGCCGCAAAAATAATTACGTATATGCACCAAGTACTTCAGGTTCTTGTAGTGAATTGCCAAACTTTCCATTTGACATGGTGGTAAAGCTCAATCTTTCAACTAAATCTGTGAACACATGGTCTGCTAGTAGTAGAAGATTTGTCGGTGAACCCACATTCGTTGCTAAAGGTTTTGAAGAAGATGACGGTTACATTCTAGTAGTCGAGTATGCAGCTGTAGTTCAAAGGTGCTATCTAGTTATCTTGGATTCAAAAAAGATTGGAGCGGCTGACGCACTTGTGGCAAGACTTGAAGTCCCCAAGGACCTAAATTTTCCTTTTGGTTTTCATGGATGCTGGGCCAACAATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001763 GO:0003674 GO:0003824 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008300 GO:0008610 GO:0009056 GO:0009058 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010016 GO:0010033 GO:0010223 GO:0010346 GO:0010436 GO:0010817 GO:0016042 GO:0016106 GO:0016114 GO:0016119 GO:0016121 GO:0016491 GO:0016701 GO:0016702 GO:0018130 GO:0032501 GO:0032502 GO:0042214 GO:0042221 GO:0042445 GO:0042446 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0045549 GO:0046247 GO:0046483 GO:0048367 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051213 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901334 GO:1901336 GO:1901360 GO:1901362 GO:1901575 GO:1901576 GO:1901600 GO:1901601 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00906 map00906

Pfam Domains

Protein Families

RPE65

Protein Analysis

625

Amino Acids

69.82

Weight (kDa)

6.19

Isoelectric Point (pI)

37.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPE65	PF03055	78 - 621	1.3e-86	Retinal pigment epithelial membrane protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44990 AT2G44990 AT2G44990
fragaria_vesca	FvH4_7g10450
malus_domestica	MD07G1110600.v1.1
prunus_persica	Prupe.2G133900_v2.0.a1
pyrus_communis	pycom07g09530
rosa_chinensis	RchiOBHm_Chr1g0342921 RchiOBHm_Chr1g0342931 RchiOBHm_Chr1g0348141 RchiOBHm_Chr1g0348171 RchiOBHm_Chr1g0348201 RchiOBHm_Chr2g0136091 RchiOBHm_Chr7g0229961
rosa_laevigata	RLG00000028678 RLG00000028682 RLG00000028684 RLG00000028685 RLG00000028686
rosa_multiflora	Rmu_co8414565.1_g000001 Rmu_co8499605.1_g000001 Rmu_sc0001563.1_g000031 Rmu_sc0001890.1_g000013 Rmu_sc0001890.1_g000015 Rmu_sc0002209.1_g000017 Rmu_sc0003991.1_g000009 Rmu_sc0004502.1_g000011 Rmu_sc0004502.1_g000018 Rmu_sc0005046.1_g000018
rosa_roxburghii	Rroxscaffold_4G00307110 Rroxscaffold_4G00307160 Rroxscaffold_4G00307170 Rroxscaffold_4G00307180
rosa_rugosa	Rorug01G0145700.1 Rorug01G0192700 Rorug01G0192900 Rorug01G0193500
rosa_samantha	Rh1AG095900 Rh1AG210700 Rh1AG210800 Rh1BG176200 Rh1BG176800 Rh1BG177100 Rh1BG177200 Rh1CG195000 Rh1CG195100 Rh1DG205900 Rh1DG206300 Rh1DG206600 Rh1DG206700 Rh3DG305500
rosa_wichuraiana	Rw0G011410 Rw1G017570 Rw1G017580 Rw1G017590 Rw1G017800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1787
AccII	CGCG	1 cut(s)	1035
AccIII	TCCGGA	1 cut(s)	311
AciI	CCGC	6 cut(s)	113, 129, 511, 1033, 1525, 1787
AclWI	GGATC	2 cut(s)	710, 1264
AcoI	YGGCCR	2 cut(s)	450, 742
AcsI	RAATTY	4 cut(s)	923, 934, 1261, 1831
AcuI	CTGAAG	3 cut(s)	328, 1050, 1542
AcvI	CACGTG	1 cut(s)	979
AcyI	GRCGYC	1 cut(s)	147
AfaI	GTAC	2 cut(s)	505, 1555
AfiI	CCNNNNNNNGG	3 cut(s)	380, 500, 1411
AflIII	ACRYGT	2 cut(s)	978, 1222
AhdI	GACNNNNNGTC	2 cut(s)	557, 1814
AjnI	CCWGG	1 cut(s)	334
AjuI	GAANNNNNNNTTGG	2 cut(s)	23, 55
AluBI	AGCT	7 cut(s)	609, 700, 827, 838, 1199, 1609, 1736
AluI	AGCT	7 cut(s)	609, 700, 827, 838, 1199, 1609, 1736
Alw21I	GWGCWC	3 cut(s)	72, 372, 489
Alw26I	GTCTC	2 cut(s)	342, 665
Alw44I	GTGCAC	2 cut(s)	68, 368
AlwI	GGATC	2 cut(s)	710, 1264
Aor13HI	TCCGGA	1 cut(s)	311
AoxI	GGCC	5 cut(s)	450, 742, 806, 1522, 1860
ApaLI	GTGCAC	2 cut(s)	68, 368
ApeKI	GCWGC	4 cut(s)	206, 764, 1216, 1733
ApoI	RAATTY	4 cut(s)	923, 934, 1261, 1831
Asp700I	GAANNNNTTC	1 cut(s)	959
AspA2I	CCTAGG	1 cut(s)	1145
AspLEI	GCGC	1 cut(s)	475
AspS9I	GGNCC	3 cut(s)	332, 1825, 1860
AsuHPI	GGTGA	3 cut(s)	39, 1394, 1679
AsuNHI	GCTAGC	1 cut(s)	4
AvaII	GGWCC	2 cut(s)	332, 1825
AvrII	CCTAGG	1 cut(s)	1145
AxyI	CCTNAGG	1 cut(s)	395
BaeGI	GKGCMC	2 cut(s)	72, 372
BalI	TGGCCA	1 cut(s)	452
BanII	GRGCYC	1 cut(s)	342
BbrPI	CACGTG	1 cut(s)	979
Bbv12I	GWGCWC	3 cut(s)	72, 372, 489
BbvI	GCAGC	4 cut(s)	193, 751, 1203, 1745
BccI	CCATC	5 cut(s)	131, 374, 407, 734, 1427
BceAI	ACGGC	2 cut(s)	403, 729
BciT130I	CCWGG	1 cut(s)	336
BclI	TGATCA	1 cut(s)	576
BcoDI	GTCTC	2 cut(s)	342, 665
BfaI	CTAG	6 cut(s)	5, 182, 1146, 1647, 1718, 1757
BfmI	CTRYAG	1 cut(s)	1737
BisI	GCNGC	6 cut(s)	207, 765, 1217, 1525, 1734, 1788
BlnI	CCTAGG	1 cut(s)	1145
BlsI	GCNGC	6 cut(s)	208, 766, 1218, 1526, 1735, 1789
BmcAI	AGTACT	1 cut(s)	1555
Bme1390I	CCNGG	1 cut(s)	336
Bme18I	GGWCC	2 cut(s)	332, 1825
BmeRI	GACNNNNNGTC	2 cut(s)	557, 1814
BmgT120I	GGNCC	3 cut(s)	332, 1825, 1860
BmiI	GGNNCC	3 cut(s)	333, 651, 1464
BmrFI	CCNGG	1 cut(s)	336
BmsI	GCATC	1 cut(s)	1844
BmtI	GCTAGC	1 cut(s)	8
BplI	GAGNNNNNCTC	2 cut(s)	145, 177
BsaAI	YACGTR	3 cut(s)	507, 979, 1540
BsaHI	GRCGYC	1 cut(s)	147
BsaI	GGTCTC	1 cut(s)	665
BsaJI	CCNNGG	8 cut(s)	201, 335, 355, 675, 745, 1145, 1435, 1821
BsaWI	WCCGGW	2 cut(s)	311, 718
Bsc4I	CCNNNNNNNGG	3 cut(s)	380, 500, 1411
Bse1I	ACTGG	4 cut(s)	223, 263, 505, 1008
Bse21I	CCTNAGG	1 cut(s)	395
Bse3DI	GCAATG	3 cut(s)	1065, 1237, 1394
BseAI	TCCGGA	1 cut(s)	311
BseBI	CCWGG	1 cut(s)	336
BseDI	CCNNGG	8 cut(s)	201, 335, 355, 675, 745, 1145, 1435, 1821
BseGI	GGATG	6 cut(s)	385, 763, 966, 1255, 1435, 1859
BseLI	CCNNNNNNNGG	3 cut(s)	380, 500, 1411
BseMI	GCAATG	3 cut(s)	1065, 1237, 1394
BseMII	CTCAG	1 cut(s)	459
BseNI	ACTGG	4 cut(s)	223, 263, 505, 1008
BseRI	GAGGAG	1 cut(s)	95
BseSI	GKGCMC	2 cut(s)	72, 372
BseXI	GCAGC	4 cut(s)	193, 751, 1203, 1745
BseYI	CCCAGC	2 cut(s)	609, 1857
BsgI	GTGCAG	1 cut(s)	309
Bsh1236I	CGCG	1 cut(s)	1035
BshFI	GGCC	5 cut(s)	452, 744, 808, 1524, 1862
BsiHKAI	GWGCWC	3 cut(s)	72, 372, 489
BsiSI	CCGG	2 cut(s)	312, 719
BslFI	GGGAC	4 cut(s)	230, 278, 345, 1802
BslI	CCNNNNNNNGG	3 cut(s)	380, 500, 1411
BsmAI	GTCTC	2 cut(s)	342, 665
BsmBI	CGTCTC	1 cut(s)	342
BsmFI	GGGAC	4 cut(s)	230, 278, 345, 1802
BsmI	GAATGC	1 cut(s)	530
BsnI	GGCC	5 cut(s)	452, 744, 808, 1524, 1862
Bso31I	GGTCTC	1 cut(s)	665
Bsp1286I	GDGCHC	4 cut(s)	72, 342, 372, 489
Bsp13I	TCCGGA	1 cut(s)	311
Bsp143I	GATC	5 cut(s)	576, 715, 973, 1159, 1269
Bsp19I	CCATGG	1 cut(s)	355
BspACI	CCGC	6 cut(s)	113, 129, 511, 1033, 1525, 1787
BspANI	GGCC	5 cut(s)	452, 744, 808, 1524, 1862
BspCNI	CTCAG	1 cut(s)	460
BspEI	TCCGGA	1 cut(s)	311
BspFNI	CGCG	1 cut(s)	1035
BspHI	TCATGA	1 cut(s)	988
BspLI	GGNNCC	3 cut(s)	333, 651, 1464
BspOI	GCTAGC	1 cut(s)	8
BspPI	GGATC	2 cut(s)	710, 1264
BspQI	GCTCTTC	2 cut(s)	347, 477
BspTNI	GGTCTC	1 cut(s)	665
BsrBI	CCGCTC	1 cut(s)	1787
BsrDI	GCAATG	3 cut(s)	1065, 1237, 1394
BsrI	ACTGG	4 cut(s)	223, 263, 505, 1008
BssECI	CCNNGG	8 cut(s)	201, 335, 355, 675, 745, 1145, 1435, 1821
BssMI	GATC	5 cut(s)	576, 715, 973, 1159, 1269
BssNI	GRCGYC	1 cut(s)	147
BssT1I	CCWWGG	4 cut(s)	355, 675, 1145, 1821
Bst2UI	CCWGG	1 cut(s)	336
Bst4CI	ACNGT	6 cut(s)	67, 367, 685, 822, 894, 1709
Bst6I	CTCTTC	2 cut(s)	347, 477
BstACI	GRCGYC	1 cut(s)	147
BstBAI	YACGTR	3 cut(s)	507, 979, 1540
BstC8I	GCNNGC	2 cut(s)	6, 810
BstDEI	CTNAG	4 cut(s)	395, 468, 570, 1116
BstDSI	CCRYGG	4 cut(s)	201, 355, 745, 1435
BstENI	CCTNNNNNAGG	1 cut(s)	1409
BstF5I	GGATG	6 cut(s)	385, 763, 966, 1255, 1435, 1859
BstFNI	CGCG	1 cut(s)	1035
BstHHI	GCGC	1 cut(s)	475
BstKTI	GATC	5 cut(s)	579, 718, 976, 1162, 1272
BstMAI	GTCTC	2 cut(s)	342, 665
BstMBI	GATC	5 cut(s)	576, 715, 973, 1159, 1269
BstMWI	GCNNNNNNNGC	5 cut(s)	128, 517, 814, 1793, 1802
BstNI	CCWGG	1 cut(s)	336
BstNSI	RCATGY	2 cut(s)	1226, 1283
BstSCI	CCNGG	1 cut(s)	334
BstSFI	CTRYAG	1 cut(s)	1737
BstSLI	GKGCMC	2 cut(s)	72, 372
BstSNI	TACGTA	1 cut(s)	1540
BstUI	CGCG	1 cut(s)	1035
BstV1I	GCAGC	4 cut(s)	193, 751, 1203, 1745
BstX2I	RGATCY	1 cut(s)	1269
BstXI	CCANNNNNNTGG	1 cut(s)	1426
BstYI	RGATCY	1 cut(s)	1269
Bsu36I	CCTNAGG	1 cut(s)	395
BsuRI	GGCC	5 cut(s)	452, 744, 808, 1524, 1862
BtgI	CCRYGG	4 cut(s)	201, 355, 745, 1435
BtsCI	GGATG	6 cut(s)	385, 763, 966, 1255, 1435, 1859
BtsI	GCAGTG	1 cut(s)	24
BtsIMutI	CAGTG	2 cut(s)	24, 270
Cac8I	GCNNGC	2 cut(s)	6, 810
CciI	TCATGA	1 cut(s)	988
CfoI	GCGC	1 cut(s)	475
Cfr13I	GGNCC	3 cut(s)	332, 1825, 1860
CseI	GACGC	2 cut(s)	155, 1802
Csp6I	GTAC	2 cut(s)	504, 1554
CspCI	CAANNNNNGTGG	4 cut(s)	1424, 1459, 1663, 1698
CviQI	GTAC	2 cut(s)	504, 1554
DdeI	CTNAG	4 cut(s)	395, 468, 570, 1116
DpnI	GATC	5 cut(s)	578, 717, 975, 1161, 1271
DpnII	GATC	5 cut(s)	576, 715, 973, 1159, 1269
DriI	GACNNNNNGTC	2 cut(s)	557, 1814
EaeI	YGGCCR	2 cut(s)	450, 742
Eam1104I	CTCTTC	2 cut(s)	347, 477
Eam1105I	GACNNNNNGTC	2 cut(s)	557, 1814
EarI	CTCTTC	2 cut(s)	347, 477
Eco105I	TACGTA	1 cut(s)	1540
Eco130I	CCWWGG	4 cut(s)	355, 675, 1145, 1821
Eco24I	GRGCYC	1 cut(s)	342
Eco31I	GGTCTC	1 cut(s)	665
Eco47I	GGWCC	2 cut(s)	332, 1825
Eco57I	CTGAAG	3 cut(s)	328, 1050, 1542
Eco72I	CACGTG	1 cut(s)	979
Eco81I	CCTNAGG	1 cut(s)	395
EcoNI	CCTNNNNNAGG	1 cut(s)	1409
EcoO109I	RGGNCCY	1 cut(s)	1825
EcoRI	GAATTC	1 cut(s)	1261
EcoRII	CCWGG	1 cut(s)	334
EcoT14I	CCWWGG	4 cut(s)	355, 675, 1145, 1821
EcoT38I	GRGCYC	1 cut(s)	342
ErhI	CCWWGG	4 cut(s)	355, 675, 1145, 1821
Esp3I	CGTCTC	1 cut(s)	342
FalI	AAGNNNNNCTT	4 cut(s)	659, 691, 843, 875
FaqI	GGGAC	4 cut(s)	230, 278, 345, 1802
FbaI	TGATCA	1 cut(s)	576
Fnu4HI	GCNGC	6 cut(s)	207, 765, 1217, 1525, 1734, 1788
FokI	GGATG	6 cut(s)	392, 770, 953, 1262, 1442, 1866
FriOI	GRGCYC	1 cut(s)	342
Fsp4HI	GCNGC	6 cut(s)	207, 765, 1217, 1525, 1734, 1788
FspBI	CTAG	6 cut(s)	5, 182, 1146, 1647, 1718, 1757
GlaI	GCGC	1 cut(s)	474
GluI	GCNGC	6 cut(s)	207, 765, 1217, 1525, 1734, 1788
GsaI	CCCAGC	2 cut(s)	613, 1861
HaeIII	GGCC	5 cut(s)	452, 744, 808, 1524, 1862
HapII	CCGG	2 cut(s)	312, 719
HgaI	GACGC	2 cut(s)	155, 1802
HhaI	GCGC	1 cut(s)	475
Hin1I	GRCGYC	1 cut(s)	147
Hin6I	GCGC	1 cut(s)	473
HinP1I	GCGC	1 cut(s)	473
HincII	GTYRAC	1 cut(s)	177
HindII	GTYRAC	1 cut(s)	177
HinfI	GANTC	8 cut(s)	21, 197, 268, 929, 985, 1077, 1108, 1769
HpaI	GTTAAC	1 cut(s)	177
HpaII	CCGG	2 cut(s)	312, 719
HphI	GGTGA	3 cut(s)	39, 1394, 1679
Hpy166II	GTNNAC	9 cut(s)	70, 177, 370, 516, 1308, 1349, 1435, 1633, 1670
Hpy188I	TCNGA	6 cut(s)	20, 250, 347, 1164, 1267, 1492
Hpy188III	TCNNGA	7 cut(s)	312, 562, 688, 989, 1175, 1206, 1273
Hpy8I	GTNNAC	9 cut(s)	70, 177, 370, 516, 1308, 1349, 1435, 1633, 1670
Hpy99I	CGWCG	1 cut(s)	367
HpyCH4III	ACNGT	6 cut(s)	67, 367, 685, 822, 894, 1709
HpyCH4IV	ACGT	4 cut(s)	506, 585, 978, 1539
HpyCH4V	TGCA	9 cut(s)	70, 290, 370, 767, 1058, 1219, 1315, 1547, 1733
HpyF10VI	GCNNNNNNNGC	5 cut(s)	128, 517, 814, 1793, 1802
HpyF3I	CTNAG	4 cut(s)	395, 468, 570, 1116
HpySE526I	ACGT	4 cut(s)	506, 585, 978, 1539
Hsp92I	GRCGYC	1 cut(s)	147
HspAI	GCGC	1 cut(s)	473
Kpn2I	TCCGGA	1 cut(s)	311
Ksp22I	TGATCA	1 cut(s)	576
KspAI	GTTAAC	1 cut(s)	177
Kzo9I	GATC	5 cut(s)	576, 715, 973, 1159, 1269
LguI	GCTCTTC	2 cut(s)	347, 477
LmnI	GCTCC	4 cut(s)	527, 1204, 1462, 1784
Lsp1109I	GCAGC	4 cut(s)	193, 751, 1203, 1745
LweI	GCATC	1 cut(s)	1844
MaeI	CTAG	6 cut(s)	5, 182, 1146, 1647, 1718, 1757
MaeII	ACGT	4 cut(s)	506, 585, 978, 1539
MaeIII	GTNAC	5 cut(s)	45, 265, 383, 496, 1709
MalI	GATC	5 cut(s)	578, 717, 975, 1161, 1271
MbiI	CCGCTC	1 cut(s)	1787
MboI	GATC	5 cut(s)	576, 715, 973, 1159, 1269
MboII	GAAGA	6 cut(s)	334, 494, 896, 1668, 1709, 1712
MflI	RGATCY	1 cut(s)	1269
MhlI	GDGCHC	4 cut(s)	72, 342, 372, 489
MlsI	TGGCCA	1 cut(s)	452
MluCI	AATT	9 cut(s)	165, 660, 923, 934, 1165, 1261, 1534, 1574, 1831
MluNI	TGGCCA	1 cut(s)	452
MlyI	GAGTC	2 cut(s)	191, 262
MmeI	TCCRAC	2 cut(s)	459, 1109
Mox20I	TGGCCA	1 cut(s)	452
MroI	TCCGGA	1 cut(s)	311
MroXI	GAANNNNTTC	1 cut(s)	959
MscI	TGGCCA	1 cut(s)	452
MseI	TTAA	5 cut(s)	176, 801, 939, 1038, 1044
Msp20I	TGGCCA	1 cut(s)	452
MspA1I	CMGCKG	1 cut(s)	1736
MspI	CCGG	2 cut(s)	312, 719
MspR9I	CCNGG	1 cut(s)	336
Mva1269I	GAATGC	1 cut(s)	530
MvaI	CCWGG	1 cut(s)	336
MvnI	CGCG	1 cut(s)	1035
MwoI	GCNNNNNNNGC	5 cut(s)	128, 517, 814, 1793, 1802
NcoI	CCATGG	1 cut(s)	355
NdeII	GATC	5 cut(s)	576, 715, 973, 1159, 1269
NheI	GCTAGC	1 cut(s)	4
NlaIV	GGNNCC	3 cut(s)	333, 651, 1464
NmeAIII	GCCGAG	1 cut(s)	175
NmuCI	GTSAC	4 cut(s)	45, 265, 383, 496
NspI	RCATGY	2 cut(s)	1226, 1283
PagI	TCATGA	1 cut(s)	988
PciI	ACATGT	1 cut(s)	1222
PciSI	GCTCTTC	2 cut(s)	347, 477
PcsI	WCGNNNNNNNCGW	1 cut(s)	198
PctI	GAATGC	1 cut(s)	530
PdmI	GAANNNNTTC	1 cut(s)	959
PfeI	GAWTC	6 cut(s)	21, 929, 985, 1077, 1108, 1769
PkrI	GCNGC	6 cut(s)	208, 766, 1218, 1526, 1735, 1789
PleI	GAGTC	2 cut(s)	191, 262
PmaCI	CACGTG	1 cut(s)	979
PmlI	CACGTG	1 cut(s)	979
PpsI	GAGTC	2 cut(s)	191, 262
Ppu21I	YACGTR	3 cut(s)	507, 979, 1540
PpuMI	RGGWCCY	1 cut(s)	1825
PscI	ACATGT	1 cut(s)	1222
Psp5II	RGGWCCY	1 cut(s)	1825
Psp6I	CCWGG	1 cut(s)	334
PspCI	CACGTG	1 cut(s)	979
PspFI	CCCAGC	2 cut(s)	609, 1857
PspGI	CCWGG	1 cut(s)	334
PspN4I	GGNNCC	3 cut(s)	333, 651, 1464
PspPI	GGNCC	3 cut(s)	332, 1825, 1860
PspPPI	RGGWCCY	1 cut(s)	1825
PsrI	GAACNNNNNNTAC	2 cut(s)	1546, 1578
PsuI	RGATCY	1 cut(s)	1269
PvuII	CAGCTG	1 cut(s)	1736
RsaI	GTAC	2 cut(s)	505, 1555
RsaNI	GTAC	2 cut(s)	504, 1554
SapI	GCTCTTC	2 cut(s)	347, 477
SaqAI	TTAA	5 cut(s)	176, 801, 939, 1038, 1044
SatI	GCNGC	6 cut(s)	207, 765, 1217, 1525, 1734, 1788
Sau3AI	GATC	5 cut(s)	576, 715, 973, 1159, 1269
Sau96I	GGNCC	3 cut(s)	332, 1825, 1860
ScaI	AGTACT	1 cut(s)	1555
SchI	GAGTC	2 cut(s)	191, 262
ScrFI	CCNGG	1 cut(s)	336
SduI	GDGCHC	4 cut(s)	72, 342, 372, 489
SfaNI	GCATC	1 cut(s)	1844
SfcI	CTRYAG	1 cut(s)	1737
SinI	GGWCC	2 cut(s)	332, 1825
SnaBI	TACGTA	1 cut(s)	1540
Sse9I	AATT	9 cut(s)	165, 660, 923, 934, 1165, 1261, 1534, 1574, 1831
SsiI	CCGC	6 cut(s)	113, 129, 511, 1033, 1525, 1787
SspI	AATATT	1 cut(s)	39
SspMI	CTAG	6 cut(s)	5, 182, 1146, 1647, 1718, 1757
StyD4I	CCNGG	1 cut(s)	334
StyI	CCWWGG	4 cut(s)	355, 675, 1145, 1821
TaaI	ACNGT	6 cut(s)	67, 367, 685, 822, 894, 1709
TaiI	ACGT	4 cut(s)	509, 588, 981, 1542
TaqI	TCGA	8 cut(s)	192, 362, 411, 840, 1174, 1353, 1361, 1725
TasI	AATT	9 cut(s)	165, 660, 923, 934, 1165, 1261, 1534, 1574, 1831
TatI	WGTACW	1 cut(s)	1553
TauI	GCSGC	2 cut(s)	1527, 1790
TfiI	GAWTC	6 cut(s)	21, 929, 985, 1077, 1108, 1769
Tru1I	TTAA	5 cut(s)	176, 801, 939, 1038, 1044
Tru9I	TTAA	5 cut(s)	176, 801, 939, 1038, 1044
TscAI	CASTG	2 cut(s)	31, 270
TseFI	GTSAC	4 cut(s)	45, 265, 383, 496
TseI	GCWGC	4 cut(s)	206, 764, 1216, 1733
Tsp45I	GTSAC	4 cut(s)	45, 265, 383, 496
TspDTI	ATGAA	7 cut(s)	436, 936, 952, 977, 1266, 1382, 1838
TspGWI	ACGGA	1 cut(s)	190
TspRI	CASTG	2 cut(s)	31, 270
VneI	GTGCAC	2 cut(s)	68, 368
VpaK11BI	GGWCC	2 cut(s)	332, 1825
XagI	CCTNNNNNAGG	1 cut(s)	1409
XapI	RAATTY	4 cut(s)	923, 934, 1261, 1831
XceI	RCATGY	2 cut(s)	1226, 1283
XmaJI	CCTAGG	1 cut(s)	1145
XmnI	GAANNNNTTC	1 cut(s)	959
XspI	CTAG	6 cut(s)	5, 182, 1146, 1647, 1718, 1757
ZrmI	AGTACT	1 cut(s)	1555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.