RchiOBHm_Chr1g0348171

Carotenoid cleavage dioxygenase 7

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
41031551 .. 41034464
2914 bp
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UTR
Exon/CDS
Intron
PRQ57423

Sequence Viewer

Length: 1374 bp
ATGCACCCTTTCGACGGTCACGGCTACCTCAGGGCTTTTACTTTCGATGGGCTTAATGGGGATAAGTTCACTGTCAAGTTCATGGCGAGGTACGTGAATACTGAGGCAAAGGTGGAAGAGCACGACCCGGTGACCAACACATGGCGGTTCCGACATAGGGGGTTGTTCTCGATGCTGAAGAGAGGAGAGAAAGTTTGGAACACCAAGGTGATGAAAAACGTGGCGAATACTAGTGTGTTGAGCTGGGGTGGGAGGCTGTTGTGCTTGTGGGAAGGCGGGGAACCATACGAAATTGAACCGGAGAGGTTGGATACGATCGGGAAGGTCAAGCTGATGGATGGTTGGGATTCAGTGGTGGAGAGGAGAAGCGATGGTGGTGATGTATGGGATGTTGCAGCAAGGTTGCTGAAGCCGATTTTGTACGGAGTGTTTAAGATGCCAGTGAAGCGATTATTAGCTCATTATAAGTTCGATGCTCGCAGAAATAGACTTCTTTTAATGTCATGTAATGCAGAAGATATTTTTTTACCACGCACCAATTTTACATTTTATGGTGCAATGACTTCATTTTGTGGAATTACTCCAACAATTGCAGCATTATCAGTGAACCCTAGCAAGGAAACTTCTCCCATATATGTGCTTCCTCGGTTTCCTAATGAAGTGAATTATAATCGAGATTGGAGAGTGCCTGTTGAAGCTCCTTCACAATTTTGGCTGCTACATGTAGGCAATGCCTATGAGAGTTTGGATGAAAATGGGAATTTGGAGATTCAAATACAAGCTTCTGTTTGCTCTTACGAGTGGTTCACATTACATAAATTACTTGGATATGATTGGCAAAGTGGTAAACTGGACCCTTCGATTATGTACTTAAATGGAAACAAAAGCAAGAAAATGCCTCACCTTGTCCAGGTTTCCATCAACTTGGATACCGATGGGATCTATCAAAGATGTGATATTGAGCCATTAAACCAGTGGATCAAGTCATCAGATTTTCCCGTCATAAATCCAGCATTTTCGGGCAGCAAGAATAAGTACATATATGCAGCAGCTTTTTCAGGTTCTCGCAGGGCATTGCCAAACTTTCCATATGACATGGTGGTGAAGGTCAATCTTTCAACTAAATCTGTGCGCACATGGTATGCTGATAGTCGAAGATTTATCGGCGAACCCACTTTCATAGCCAAAGGTTCCGAAGAAGATGAGGGTTACATTCTTGTAGTTGAGTATGCAGTTGCAGTTCAAAGGTGCTATCTGGTTATCTTGGATTCAAAGAGGATTGGAGAGGCTGATGCACTTATGGCAAGACTTGAAGTCCCCAAACACCTAAATTTTCCTCTTGGTTTTCATGGTTTCTGGGCCAGTAACGAATAG

Protein Analysis

457

Amino Acids

52.36

Weight (kDa)

8.34

Isoelectric Point (pI)

43.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RPE65 PF03055 2 - 177 1.7e-24 Retinal pigment epithelial membrane protein
RPE65 PF03055 197 - 454 3.8e-39 Retinal pigment epithelial membrane protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 465, 669
Acc16I TGCGCA 1 cut(s) 1133
AccB7I CCANNNNNTGG 1 cut(s) 141
AciI CCGC 2 cut(s) 145, 276
AclWI GGATC 2 cut(s) 947, 986
AcsI RAATTY 2 cut(s) 760, 1330
AcuI CTGAAG 2 cut(s) 197, 428
AfaI GTAC 4 cut(s) 92, 422, 869, 1037
AfiI CCNNNNNNNGG 5 cut(s) 14, 141, 157, 616, 910
AflIII ACRYGT 1 cut(s) 721
AgsI TTSAA 7 cut(s) 296, 695, 773, 1119, 1244, 1272, 1313
AhdI GACNNNNNGTC 1 cut(s) 1313
AhlI ACTAGT 1 cut(s) 230
AjnI CCWGG 1 cut(s) 909
AleI CACNNNNGTG 1 cut(s) 206
AluBI AGCT 6 cut(s) 243, 331, 458, 698, 782, 1052
AluI AGCT 6 cut(s) 243, 331, 458, 698, 782, 1052
Alw21I GWGCWC 1 cut(s) 123
AlwI GGATC 2 cut(s) 947, 986
AoxI GGCC 1 cut(s) 1359
ApeKI GCWGC 6 cut(s) 395, 593, 715, 1023, 1046, 1049
ApoI RAATTY 2 cut(s) 760, 1330
AspLEI GCGC 1 cut(s) 1134
AspS9I GGNCC 2 cut(s) 853, 1359
AsuC2I CCSGG 1 cut(s) 128
AsuHPI GGTGA 5 cut(s) 142, 220, 389, 893, 1114
AvaII GGWCC 1 cut(s) 853
AxyI CCTNAGG 1 cut(s) 29
Bbv12I GWGCWC 1 cut(s) 123
BbvI GCAGC 6 cut(s) 407, 605, 702, 1035, 1058, 1061
BccI CCATC 6 cut(s) 41, 328, 332, 365, 926, 929
BceAI ACGGC 1 cut(s) 37
BciT130I CCWGG 1 cut(s) 911
BciVI GTATCC 2 cut(s) 304, 922
BcnI CCSGG 1 cut(s) 128
BcuI ACTAGT 1 cut(s) 230
BfaI CTAG 2 cut(s) 231, 612
BfuI GTATCC 2 cut(s) 304, 922
BisI GCNGC 6 cut(s) 396, 594, 716, 1024, 1047, 1050
BlsI GCNGC 6 cut(s) 397, 595, 717, 1025, 1048, 1051
Bme1390I CCNGG 2 cut(s) 128, 911
Bme18I GGWCC 1 cut(s) 853
BmeRI GACNNNNNGTC 1 cut(s) 1313
BmgT120I GGNCC 2 cut(s) 853, 1359
BmiI GGNNCC 4 cut(s) 149, 282, 855, 1192
BmrFI CCNGG 2 cut(s) 128, 911
BmsI GCATC 4 cut(s) 162, 426, 463, 1282
BpuMI CCSGG 1 cut(s) 128
BsaAI YACGTR 1 cut(s) 94
BsaJI CCNNGG 2 cut(s) 204, 644
BsaWI WCCGGW 1 cut(s) 298
BsaXI ACNNNNNCTCC 2 cut(s) 177, 207
Bsc4I CCNNNNNNNGG 5 cut(s) 14, 141, 157, 616, 910
Bse1I ACTGG 4 cut(s) 440, 855, 973, 1362
Bse21I CCTNAGG 1 cut(s) 29
Bse3DI GCAATG 3 cut(s) 564, 736, 1073
BseBI CCWGG 1 cut(s) 911
BseDI CCNNGG 2 cut(s) 204, 644
BseGI GGATG 3 cut(s) 343, 394, 754
BseLI CCNNNNNNNGG 5 cut(s) 14, 141, 157, 616, 910
BseMI GCAATG 3 cut(s) 564, 736, 1073
BseMII CTCAG 2 cut(s) 43, 93
BseNI ACTGG 4 cut(s) 440, 855, 973, 1362
BseRI GAGGAG 2 cut(s) 198, 376
BseXI GCAGC 6 cut(s) 407, 605, 702, 1035, 1058, 1061
BseYI CCCAGC 1 cut(s) 243
Bsh1285I CGRYCG 1 cut(s) 318
BshFI GGCC 1 cut(s) 1361
BsiEI CGRYCG 1 cut(s) 318
BsiHKAI GWGCWC 1 cut(s) 123
BsiSI CCGG 2 cut(s) 128, 299
BslFI GGGAC 1 cut(s) 1301
BslI CCNNNNNNNGG 5 cut(s) 14, 141, 157, 616, 910
BsmFI GGGAC 1 cut(s) 1301
BsnI GGCC 1 cut(s) 1361
Bsp1286I GDGCHC 1 cut(s) 123
Bsp143I GATC 3 cut(s) 315, 939, 978
BspACI CCGC 2 cut(s) 145, 276
BspANI GGCC 1 cut(s) 1361
BspCNI CTCAG 2 cut(s) 42, 94
BspLI GGNNCC 4 cut(s) 149, 282, 855, 1192
BspPI GGATC 2 cut(s) 947, 986
BspQI GCTCTTC 1 cut(s) 111
BsrDI GCAATG 3 cut(s) 564, 736, 1073
BsrI ACTGG 4 cut(s) 440, 855, 973, 1362
BssECI CCNNGG 2 cut(s) 204, 644
BssMI GATC 3 cut(s) 315, 939, 978
BssT1I CCWWGG 1 cut(s) 204
Bst2UI CCWGG 1 cut(s) 911
Bst4CI ACNGT 2 cut(s) 17, 73
Bst6I CTCTTC 2 cut(s) 111, 173
BstBAI YACGTR 1 cut(s) 94
BstC8I GCNNGC 1 cut(s) 478
BstDEI CTNAG 2 cut(s) 29, 102
BstEII GGTNACC 1 cut(s) 130
BstENI CCTNNNNNAGG 1 cut(s) 908
BstF5I GGATG 3 cut(s) 343, 394, 754
BstHHI GCGC 1 cut(s) 1134
BstKTI GATC 3 cut(s) 318, 942, 981
BstMBI GATC 3 cut(s) 315, 939, 978
BstMCI CGRYCG 1 cut(s) 318
BstMWI GCNNNNNNNGC 2 cut(s) 445, 1301
BstNI CCWGG 1 cut(s) 911
BstNSI RCATGY 1 cut(s) 725
BstPI GGTNACC 1 cut(s) 130
BstSCI CCNGG 2 cut(s) 126, 909
BstV1I GCAGC 6 cut(s) 407, 605, 702, 1035, 1058, 1061
BstX2I RGATCY 1 cut(s) 939
BstXI CCANNNNNNTGG 1 cut(s) 925
BstYI RGATCY 1 cut(s) 939
Bsu36I CCTNAGG 1 cut(s) 29
BsuI GTATCC 2 cut(s) 304, 922
BsuRI GGCC 1 cut(s) 1361
BtgZI GCGATG 1 cut(s) 384
BtsCI GGATG 3 cut(s) 343, 394, 754
BtsIMutI CAGTG 5 cut(s) 69, 357, 447, 609, 980
Cac8I GCNNGC 1 cut(s) 478
CfoI GCGC 1 cut(s) 1134
Cfr13I GGNCC 2 cut(s) 853, 1359
Csp6I GTAC 4 cut(s) 91, 421, 868, 1036
CviAII CATG 7 cut(s) 82, 141, 504, 722, 1096, 1137, 1349
CviQI GTAC 4 cut(s) 91, 421, 868, 1036
DdeI CTNAG 2 cut(s) 29, 102
DpnI GATC 3 cut(s) 317, 941, 980
DpnII GATC 3 cut(s) 315, 939, 978
DriI GACNNNNNGTC 1 cut(s) 1313
Eam1104I CTCTTC 2 cut(s) 111, 173
Eam1105I GACNNNNNGTC 1 cut(s) 1313
EarI CTCTTC 2 cut(s) 111, 173
Eco130I CCWWGG 1 cut(s) 204
Eco47I GGWCC 1 cut(s) 853
Eco57I CTGAAG 2 cut(s) 197, 428
Eco81I CCTNAGG 1 cut(s) 29
Eco91I GGTNACC 1 cut(s) 130
EcoNI CCTNNNNNAGG 1 cut(s) 908
EcoO65I GGTNACC 1 cut(s) 130
EcoRII CCWGG 1 cut(s) 909
EcoT14I CCWWGG 1 cut(s) 204
ErhI CCWWGG 1 cut(s) 204
FaeI CATG 7 cut(s) 85, 144, 507, 725, 1099, 1140, 1352
FaqI GGGAC 1 cut(s) 1301
FatI CATG 7 cut(s) 81, 140, 503, 721, 1095, 1136, 1348
FauI CCCGC 1 cut(s) 269
FauNDI CATATG 1 cut(s) 1090
Fnu4HI GCNGC 6 cut(s) 396, 594, 716, 1024, 1047, 1050
FokI GGATG 3 cut(s) 350, 401, 761
Fsp4HI GCNGC 6 cut(s) 396, 594, 716, 1024, 1047, 1050
FspAI RTGCGCAY 1 cut(s) 1133
FspBI CTAG 2 cut(s) 231, 612
FspI TGCGCA 1 cut(s) 1133
GlaI GCGC 1 cut(s) 1133
GluI GCNGC 6 cut(s) 396, 594, 716, 1024, 1047, 1050
GsaI CCCAGC 1 cut(s) 247
HaeIII GGCC 1 cut(s) 1361
HapII CCGG 2 cut(s) 128, 299
HhaI GCGC 1 cut(s) 1134
Hin1II CATG 7 cut(s) 85, 144, 507, 725, 1099, 1140, 1352
Hin6I GCGC 1 cut(s) 1132
HinP1I GCGC 1 cut(s) 1132
HindIII AAGCTT 1 cut(s) 780
HinfI GANTC 3 cut(s) 347, 769, 1268
HpaII CCGG 2 cut(s) 128, 299
HphI GGTGA 5 cut(s) 142, 220, 389, 893, 1114
Hpy166II GTNNAC 4 cut(s) 69, 607, 807, 848
Hpy188I TCNGA 3 cut(s) 152, 991, 1195
Hpy188III TCNNGA 3 cut(s) 169, 319, 674
Hpy8I GTNNAC 4 cut(s) 69, 607, 807, 848
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 5 cut(s) 266, 316, 711, 867, 1099
HpyCH4III ACNGT 2 cut(s) 17, 73
HpyCH4IV ACGT 2 cut(s) 93, 219
HpyCH4V TGCA 9 cut(s) 4, 395, 512, 557, 593, 1046, 1232, 1238, 1295
HpyF10VI GCNNNNNNNGC 2 cut(s) 445, 1301
HpyF3I CTNAG 2 cut(s) 29, 102
HpySE526I ACGT 2 cut(s) 93, 219
Hsp92II CATG 7 cut(s) 85, 144, 507, 725, 1099, 1140, 1352
HspAI GCGC 1 cut(s) 1132
Kzo9I GATC 3 cut(s) 315, 939, 978
LguI GCTCTTC 1 cut(s) 111
LmnI GCTCC 1 cut(s) 703
Lsp1109I GCAGC 6 cut(s) 407, 605, 702, 1035, 1058, 1061
LweI GCATC 4 cut(s) 162, 426, 463, 1282
MaeI CTAG 2 cut(s) 231, 612
MaeII ACGT 2 cut(s) 93, 219
MaeIII GTNAC 4 cut(s) 17, 130, 1208, 1364
MalI GATC 3 cut(s) 317, 941, 980
MboI GATC 3 cut(s) 315, 939, 978
MboII GAAGA 6 cut(s) 128, 190, 527, 1167, 1208, 1211
MfeI CAATTG 1 cut(s) 588
MflI RGATCY 1 cut(s) 939
MhlI GDGCHC 1 cut(s) 123
MluCI AATT 9 cut(s) 291, 538, 576, 588, 664, 707, 760, 818, 1330
MmeI TCCRAC 3 cut(s) 175, 288, 608
MseI TTAA 5 cut(s) 54, 432, 497, 872, 968
MslI CAYNNNNRTG 3 cut(s) 206, 635, 1100
MspI CCGG 2 cut(s) 128, 299
MspR9I CCNGG 2 cut(s) 128, 911
MunI CAATTG 1 cut(s) 588
MvaI CCWGG 1 cut(s) 911
MwoI GCNNNNNNNGC 2 cut(s) 445, 1301
NciI CCSGG 1 cut(s) 128
NdeI CATATG 1 cut(s) 1090
NdeII GATC 3 cut(s) 315, 939, 978
NlaIII CATG 7 cut(s) 85, 144, 507, 725, 1099, 1140, 1352
NlaIV GGNNCC 4 cut(s) 149, 282, 855, 1192
NmuCI GTSAC 2 cut(s) 17, 130
NsbI TGCGCA 1 cut(s) 1133
NspI RCATGY 1 cut(s) 725
OliI CACNNNNGTG 1 cut(s) 206
PciI ACATGT 1 cut(s) 721
PciSI GCTCTTC 1 cut(s) 111
PfeI GAWTC 3 cut(s) 347, 769, 1268
PflMI CCANNNNNTGG 1 cut(s) 141
PkrI GCNGC 6 cut(s) 397, 595, 717, 1025, 1048, 1051
Ple19I CGATCG 1 cut(s) 318
Ppu21I YACGTR 1 cut(s) 94
PscI ACATGT 1 cut(s) 721
PsiI TTATAA 2 cut(s) 465, 669
Psp6I CCWGG 1 cut(s) 909
PspEI GGTNACC 1 cut(s) 130
PspFI CCCAGC 1 cut(s) 243
PspGI CCWGG 1 cut(s) 909
PspN4I GGNNCC 4 cut(s) 149, 282, 855, 1192
PspPI GGNCC 2 cut(s) 853, 1359
PsuI RGATCY 1 cut(s) 939
PvuI CGATCG 1 cut(s) 318
RsaI GTAC 4 cut(s) 92, 422, 869, 1037
RsaNI GTAC 4 cut(s) 91, 421, 868, 1036
RseI CAYNNNNRTG 3 cut(s) 206, 635, 1100
SapI GCTCTTC 1 cut(s) 111
SaqAI TTAA 5 cut(s) 54, 432, 497, 872, 968
SatI GCNGC 6 cut(s) 396, 594, 716, 1024, 1047, 1050
Sau3AI GATC 3 cut(s) 315, 939, 978
Sau96I GGNCC 2 cut(s) 853, 1359
ScrFI CCNGG 2 cut(s) 128, 911
SduI GDGCHC 1 cut(s) 123
SfaNI GCATC 4 cut(s) 162, 426, 463, 1282
SinI GGWCC 1 cut(s) 853
SmiMI CAYNNNNRTG 3 cut(s) 206, 635, 1100
SpeI ACTAGT 1 cut(s) 230
Sse9I AATT 9 cut(s) 291, 538, 576, 588, 664, 707, 760, 818, 1330
SsiI CCGC 2 cut(s) 145, 276
SspMI CTAG 2 cut(s) 231, 612
StyD4I CCNGG 2 cut(s) 126, 909
StyI CCWWGG 1 cut(s) 204
TaaI ACNGT 2 cut(s) 17, 73
TaiI ACGT 2 cut(s) 96, 222
TaqI TCGA 7 cut(s) 12, 45, 170, 471, 673, 860, 1153
TasI AATT 9 cut(s) 291, 538, 576, 588, 664, 707, 760, 818, 1330
TatI WGTACW 2 cut(s) 867, 1035
TfiI GAWTC 3 cut(s) 347, 769, 1268
Tru1I TTAA 5 cut(s) 54, 432, 497, 872, 968
Tru9I TTAA 5 cut(s) 54, 432, 497, 872, 968
TscAI CASTG 5 cut(s) 76, 357, 447, 609, 980
TseFI GTSAC 2 cut(s) 17, 130
TseI GCWGC 6 cut(s) 395, 593, 715, 1023, 1046, 1049
Tsp45I GTSAC 2 cut(s) 17, 130
TspDTI ATGAA 7 cut(s) 70, 227, 555, 672, 765, 1168, 1337
TspGWI ACGGA 1 cut(s) 438
TspRI CASTG 5 cut(s) 76, 357, 447, 609, 980
Van91I CCANNNNNTGG 1 cut(s) 141
VpaK11BI GGWCC 1 cut(s) 853
XagI CCTNNNNNAGG 1 cut(s) 908
XapI RAATTY 2 cut(s) 760, 1330
XceI RCATGY 1 cut(s) 725
XcmI CCANNNNNNNNNTGG 1 cut(s) 972
XspI CTAG 2 cut(s) 231, 612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.