Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001225

Physical Location & Seq

Genomic Coordinates Forward (+)

42443004 .. 42460706

Gene Structure 17703 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG195000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGAAGGTTGTGATCCGGTGGTGAAGAGTGGACGTGGTGGCCGTGGTGTTTGGGATGTTGCTGCAAGATTGTTGAAGCCGATTTTGAATGGTGCAATGACTTCAGTTTGTGGAATCACTCCAGCGGTGACAGCATTATCTGTGAATCCTACCAAAGACACATCTCCAATATATTTGCTTCCTAGGTTTCCTAATGTTGTGAATTGTAGTCGAGATTGGAGAGTACCTATTGAAGCTCCTTCACGATTTTGGCTGCAACATGTAGGCAATGCCTATGATTATTTGGATGAAAATGGGAATTCAGAGATCCAGATACATGCTTCTGTTTGCTCTTACGAGTGGTTCACTTTGCAAAAGTTTGGATATGATTGGCAAAGTGGTAAACTCGACCCTTCGATTATGAACATGGATAGAAACCAAAGCAAAAAATTGCCTCACCTTGTTCAGGCGTATAGATATGAAGTCTTGACTGATGTGATTCTAGCTTACCTCAATGGGCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001763 GO:0003674 GO:0003824 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008300 GO:0008610 GO:0009056 GO:0009058 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010016 GO:0010033 GO:0010223 GO:0010346 GO:0010436 GO:0010817 GO:0016042 GO:0016106 GO:0016114 GO:0016119 GO:0016121 GO:0016491 GO:0016701 GO:0016702 GO:0018130 GO:0032501 GO:0032502 GO:0042214 GO:0042221 GO:0042445 GO:0042446 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0045549 GO:0046247 GO:0046483 GO:0048367 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051213 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901334 GO:1901336 GO:1901360 GO:1901362 GO:1901575 GO:1901576 GO:1901600 GO:1901601 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00906 map00906

Pfam Domains

Protein Families

RPE65

Protein Analysis

167

Amino Acids

18.73

Weight (kDa)

6.81

Isoelectric Point (pI)

32.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44990 AT2G44990 AT2G44990
fragaria_vesca	FvH4_7g10450
malus_domestica	MD07G1110600.v1.1
prunus_persica	Prupe.2G133900_v2.0.a1
pyrus_communis	pycom07g09530
rosa_chinensis	RchiOBHm_Chr1g0342921 RchiOBHm_Chr1g0342931 RchiOBHm_Chr1g0348141 RchiOBHm_Chr1g0348171 RchiOBHm_Chr1g0348201 RchiOBHm_Chr2g0136091 RchiOBHm_Chr7g0229961
rosa_laevigata	RLG00000028678 RLG00000028682 RLG00000028684 RLG00000028685 RLG00000028686
rosa_multiflora	Rmu_co8414565.1_g000001 Rmu_co8499605.1_g000001 Rmu_sc0001563.1_g000031 Rmu_sc0001890.1_g000013 Rmu_sc0001890.1_g000015 Rmu_sc0002209.1_g000017 Rmu_sc0003991.1_g000009 Rmu_sc0004502.1_g000011 Rmu_sc0004502.1_g000018 Rmu_sc0005046.1_g000018
rosa_roxburghii	Rroxscaffold_4G00307110 Rroxscaffold_4G00307160 Rroxscaffold_4G00307170 Rroxscaffold_4G00307180
rosa_rugosa	Rorug01G0145700.1 Rorug01G0192700 Rorug01G0192900 Rorug01G0193500
rosa_samantha	Rh1AG095900 Rh1AG210700 Rh1AG210800 Rh1BG176200 Rh1BG176800 Rh1BG177100 Rh1BG177200 Rh1CG195000 Rh1CG195100 Rh1DG205900 Rh1DG206300 Rh1DG206600 Rh1DG206700 Rh3DG305500
rosa_wichuraiana	Rw0G011410 Rw1G017570 Rw1G017580 Rw1G017590 Rw1G017800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	125
AclWI	GGATC	2 cut(s)	8, 301
AcoI	YGGCCR	1 cut(s)	40
AcsI	RAATTY	1 cut(s)	298
AcuI	CTGAAG	1 cut(s)	87
AfaI	GTAC	1 cut(s)	225
AfiI	CCNNNNNNNGG	1 cut(s)	445
AflIII	ACRYGT	1 cut(s)	259
AgsI	TTSAA	3 cut(s)	76, 88, 233
AjiI	CACGTC	1 cut(s)	35
AluBI	AGCT	2 cut(s)	236, 485
AluI	AGCT	2 cut(s)	236, 485
AlwI	GGATC	2 cut(s)	8, 301
AoxI	GGCC	2 cut(s)	40, 497
ApeKI	GCWGC	2 cut(s)	62, 253
ApoI	RAATTY	1 cut(s)	298
AspA2I	CCTAGG	1 cut(s)	182
AspS9I	GGNCC	1 cut(s)	497
AsuHPI	GGTGA	3 cut(s)	34, 139, 428
AvrII	CCTAGG	1 cut(s)	182
BbvI	GCAGC	2 cut(s)	49, 240
BceAI	ACGGC	1 cut(s)	27
BfaI	CTAG	2 cut(s)	183, 482
BisI	GCNGC	2 cut(s)	63, 254
BlnI	CCTAGG	1 cut(s)	182
BlsI	GCNGC	2 cut(s)	64, 255
BmgBI	CACGTC	1 cut(s)	35
BmgT120I	GGNCC	1 cut(s)	497
BpmI	CTGGAG	1 cut(s)	105
BsaJI	CCNNGG	2 cut(s)	43, 182
BsaWI	WCCGGW	1 cut(s)	16
Bsc4I	CCNNNNNNNGG	1 cut(s)	445
Bse3DI	GCAATG	2 cut(s)	102, 274
BseDI	CCNNGG	2 cut(s)	43, 182
BseGI	GGATG	2 cut(s)	61, 292
BseLI	CCNNNNNNNGG	1 cut(s)	445
BseMI	GCAATG	2 cut(s)	102, 274
BseXI	GCAGC	2 cut(s)	49, 240
BshFI	GGCC	2 cut(s)	42, 499
BsiSI	CCGG	1 cut(s)	17
BslI	CCNNNNNNNGG	1 cut(s)	445
BsnI	GGCC	2 cut(s)	42, 499
Bsp143I	GATC	2 cut(s)	13, 306
BspACI	CCGC	1 cut(s)	125
BspANI	GGCC	2 cut(s)	42, 499
BspPI	GGATC	2 cut(s)	8, 301
BsrDI	GCAATG	2 cut(s)	102, 274
BssECI	CCNNGG	2 cut(s)	43, 182
BssMI	GATC	2 cut(s)	13, 306
BssT1I	CCWWGG	1 cut(s)	182
Bst6I	CTCTTC	1 cut(s)	20
BstDSI	CCRYGG	1 cut(s)	43
BstENI	CCTNNNNNAGG	1 cut(s)	443
BstF5I	GGATG	2 cut(s)	61, 292
BstKTI	GATC	2 cut(s)	16, 309
BstMBI	GATC	2 cut(s)	13, 306
BstMWI	GCNNNNNNNGC	1 cut(s)	131
BstNSI	RCATGY	2 cut(s)	263, 320
BstV1I	GCAGC	2 cut(s)	49, 240
BstX2I	RGATCY	1 cut(s)	306
BstYI	RGATCY	1 cut(s)	306
BsuRI	GGCC	2 cut(s)	42, 499
BtgI	CCRYGG	1 cut(s)	43
BtrI	CACGTC	1 cut(s)	35
BtsCI	GGATG	2 cut(s)	61, 292
Cfr13I	GGNCC	1 cut(s)	497
Csp6I	GTAC	1 cut(s)	224
CviAII	CATG	3 cut(s)	260, 317, 406
CviJI	RGCY	6 cut(s)	42, 79, 236, 253, 485, 499
CviKI_1	RGCY	6 cut(s)	42, 79, 236, 253, 485, 499
CviQI	GTAC	1 cut(s)	224
DpnI	GATC	2 cut(s)	15, 308
DpnII	GATC	2 cut(s)	13, 306
EaeI	YGGCCR	1 cut(s)	40
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	182
Eco57I	CTGAAG	1 cut(s)	87
EcoNI	CCTNNNNNAGG	1 cut(s)	443
EcoRI	GAATTC	1 cut(s)	298
EcoT14I	CCWWGG	1 cut(s)	182
ErhI	CCWWGG	1 cut(s)	182
FaeI	CATG	3 cut(s)	263, 320, 409
FatI	CATG	3 cut(s)	259, 316, 405
Fnu4HI	GCNGC	2 cut(s)	63, 254
FokI	GGATG	2 cut(s)	68, 299
Fsp4HI	GCNGC	2 cut(s)	63, 254
FspBI	CTAG	2 cut(s)	183, 482
GluI	GCNGC	2 cut(s)	63, 254
GsuI	CTGGAG	1 cut(s)	105
HaeIII	GGCC	2 cut(s)	42, 499
HapII	CCGG	1 cut(s)	17
Hin1II	CATG	3 cut(s)	263, 320, 409
HinfI	GANTC	3 cut(s)	114, 145, 478
HpaII	CCGG	1 cut(s)	17
HphI	GGTGA	3 cut(s)	34, 139, 428
Hpy166II	GTNNAC	3 cut(s)	32, 345, 383
Hpy188I	TCNGA	1 cut(s)	304
Hpy188III	TCNNGA	4 cut(s)	212, 243, 310, 466
Hpy8I	GTNNAC	3 cut(s)	32, 345, 383
HpyAV	CCTTC	2 cut(s)	249, 402
HpyCH4IV	ACGT	1 cut(s)	34
HpyCH4V	TGCA	4 cut(s)	65, 95, 256, 352
HpyF10VI	GCNNNNNNNGC	1 cut(s)	131
HpySE526I	ACGT	1 cut(s)	34
Hsp92II	CATG	3 cut(s)	263, 320, 409
Kzo9I	GATC	2 cut(s)	13, 306
LmnI	GCTCC	1 cut(s)	241
LpnPI	CCDG	4 cut(s)	30, 135, 323, 431
Lsp1109I	GCAGC	2 cut(s)	49, 240
MaeI	CTAG	2 cut(s)	183, 482
MaeII	ACGT	1 cut(s)	34
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	2 cut(s)	15, 308
MboI	GATC	2 cut(s)	13, 306
MboII	GAAGA	1 cut(s)	37
MflI	RGATCY	1 cut(s)	306
MluCI	AATT	3 cut(s)	202, 298, 428
MnlI	CCTC	2 cut(s)	444, 500
MspA1I	CMGCKG	1 cut(s)	125
MspI	CCGG	1 cut(s)	17
MwoI	GCNNNNNNNGC	1 cut(s)	131
NdeII	GATC	2 cut(s)	13, 306
NlaIII	CATG	3 cut(s)	263, 320, 409
NmuCI	GTSAC	1 cut(s)	127
NspI	RCATGY	2 cut(s)	263, 320
PciI	ACATGT	1 cut(s)	259
PcsI	WCGNNNNNNNCGW	1 cut(s)	40
PfeI	GAWTC	3 cut(s)	114, 145, 478
PkrI	GCNGC	2 cut(s)	64, 255
PscI	ACATGT	1 cut(s)	259
PspPI	GGNCC	1 cut(s)	497
PsuI	RGATCY	1 cut(s)	306
RsaI	GTAC	1 cut(s)	225
RsaNI	GTAC	1 cut(s)	224
SatI	GCNGC	2 cut(s)	63, 254
Sau3AI	GATC	2 cut(s)	13, 306
Sau96I	GGNCC	1 cut(s)	497
SetI	ASST	8 cut(s)	10, 37, 188, 229, 238, 441, 487, 492
Sse9I	AATT	3 cut(s)	202, 298, 428
SsiI	CCGC	1 cut(s)	125
SspMI	CTAG	2 cut(s)	183, 482
StyI	CCWWGG	1 cut(s)	182
TaiI	ACGT	1 cut(s)	37
TaqI	TCGA	3 cut(s)	211, 387, 395
TasI	AATT	3 cut(s)	202, 298, 428
TfiI	GAWTC	3 cut(s)	114, 145, 478
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	2 cut(s)	62, 253
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	3 cut(s)	303, 416, 474
XagI	CCTNNNNNAGG	1 cut(s)	443
XapI	RAATTY	1 cut(s)	298
XceI	RCATGY	2 cut(s)	263, 320
XmaJI	CCTAGG	1 cut(s)	182
XspI	CTAG	2 cut(s)	183, 482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.