Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0001225

Physical Location & Seq

Genomic Coordinates Forward (+)

28210745 .. 28223630

Gene Structure 12886 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG176800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1875 bp

ATGCAAGCCAATCCCTTCCAATTCACTGCCAAATCAATATTCCCGTCACGGATAAACATACCTACAGTGCACCGACAGCACCGTTCGCCTTCTTTGCCTCCCCTCCTCAAACCGCCATGTGCCATCTCTGCTTCTACTCCCAATGACGCCCAGAGTTCTACTCCAATTACCATGTCAACCCTAGAAGTTGTCGATGACTCCGTGGCTGCGTTCCGGGACTACCAGTTTCTCTTTGTGTCGCAACGCTCGGAAACAAACGAGCCAGTGACTCTACAAGTTGTTGAAGGTGCAGTCCCGCCAGAGTTTCCTTCCGGAACATATTACTTGACGGGACCGGGGCTCTTCAGAGACGACCACGGCTCAACGGTGCACCCTTTGGATGGTCACGGCTACCTTAGGGCTTTCACTTTCCATGGGGTCAGTGGGAAAGAGGTCAATGTCATGTTCATGGCCAAGTATGTGAAAACTGAGGCGCAGTTGGAAGAGCACGACCCCGTGACCGGTACGTGGCGGTTCACGCATGGGGGAGCGTTCTCGGTGTTGAAGGGAGGACAGAAAGTCGGAAACACTAAGGTGATCAAAAACGTGGCGAATACTTGTGTGTTGAGCTGGGGTGGGAGGCTGATGTGCTTGTGGGAAGGTGGTGGGGAACCTTACGAAATTGAAAAGGAGACCTTGGAAACTGTCGGGAAGGTCAAGCTCATGGAAGGTTGCGATCCGGTGGTGGAGAGTGGGAGTGATGGGCGTGGTGTTTGGGATGTTGCTGCAAGATTGTTGAAGCCGATTTTGTATGGAGTGTTTAAGCAGCCAGCAAAGCGACTGTTAGCTCATTACAAGCTCGACACTCACAAAGATAGACTTCTTATGATGTCATGTAATACAGAAGATATACTGTTGCCACACAATACTTTTACATTTTATGAATTTGATTCAAATTTTAAGGAGGTGGGAAAGAAAGAGTTCATCATCCCAGATCACTTGTTCATTCATGATTGGGCTTTCACAACCAGTTATTATATACTATTTGCTAACCGCGTTAAACTTAATGTTTCTGGTGCAATGACTTCAGTTTGTGGAATCACTCCAACGATGACAGCATTATCTGTGAATCCTACCAAGGACACATCTCCAATATATTTGCTTCCTAGGTTTCCTAATGATGTGAATTATAGTCGAGATTGGAGAGTACCTATTGAAGCTCCTTCACGATTTTGGTTGCAACATGTAGGCAATGCCTATGATTATTTGGATGAAAATGGGAATTCAGAGATCCAAATACATGCTTCTGTCTGCTCTTACGAGTGGTTCACTTTGCAAAAGTTGTTTGGATATGATTGGCAAAGTGGTAAACTCGACCCTTCGATTATGAACTTGGGTGGAAACCAAAGCAAAAAATTGCCTCACCTTGTTCAGGTTTCGATCAACTTGGATGCCAATGGGATCTGTCAAAGATGTGATGTGGAGCCTATGAACAAGTGGAGCAAGTCATCAGATTTTCTTGTAATCAATCCAGCATTTTCAGGCCGCAAAAATAATTACGTATATGCACCAACTACTTCAGGTTCTCGCAGTGAATTGCCAAACTTTCCATTTGACATGGTGGTGAAGCTTAATCTTTCAACTAAATCTGTGCACACATGGTCTGCTGGTAGTAGAACATTTGTCGGTGAACCCACTTTCGTTGCTAAAGGTTCTAAAGAAGATGAGGGTTACATTCTTGTAGTTGAGTATGCAGTTGCAGTTCAAAGGTGCTATCTGGTTATCTTGGATTCAAAAAAGATTGGAGCGGCTGACGCACTTGTGGCAAGACTTGAAGTCCCCAAGGACCTAAATTTTCCTTTTGGTTTTCATGGGTGTTGGGCCAACAACGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001763 GO:0003674 GO:0003824 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008300 GO:0008610 GO:0009056 GO:0009058 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010016 GO:0010033 GO:0010223 GO:0010346 GO:0010436 GO:0010817 GO:0016042 GO:0016106 GO:0016114 GO:0016119 GO:0016121 GO:0016491 GO:0016701 GO:0016702 GO:0018130 GO:0032501 GO:0032502 GO:0042214 GO:0042221 GO:0042445 GO:0042446 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0045549 GO:0046247 GO:0046483 GO:0048367 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051213 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901334 GO:1901336 GO:1901360 GO:1901362 GO:1901575 GO:1901576 GO:1901600 GO:1901601 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00906 map00906

Pfam Domains

Protein Families

RPE65

Protein Analysis

624

Amino Acids

69.67

Weight (kDa)

6.43

Isoelectric Point (pI)

36.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPE65	PF03055	79 - 621	2e-85	Retinal pigment epithelial membrane protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44990 AT2G44990 AT2G44990
fragaria_vesca	FvH4_7g10450
malus_domestica	MD07G1110600.v1.1
prunus_persica	Prupe.2G133900_v2.0.a1
pyrus_communis	pycom07g09530
rosa_chinensis	RchiOBHm_Chr1g0342921 RchiOBHm_Chr1g0342931 RchiOBHm_Chr1g0348141 RchiOBHm_Chr1g0348171 RchiOBHm_Chr1g0348201 RchiOBHm_Chr2g0136091 RchiOBHm_Chr7g0229961
rosa_laevigata	RLG00000028678 RLG00000028682 RLG00000028684 RLG00000028685 RLG00000028686
rosa_multiflora	Rmu_co8414565.1_g000001 Rmu_co8499605.1_g000001 Rmu_sc0001563.1_g000031 Rmu_sc0001890.1_g000013 Rmu_sc0001890.1_g000015 Rmu_sc0002209.1_g000017 Rmu_sc0003991.1_g000009 Rmu_sc0004502.1_g000011 Rmu_sc0004502.1_g000018 Rmu_sc0005046.1_g000018
rosa_roxburghii	Rroxscaffold_4G00307110 Rroxscaffold_4G00307160 Rroxscaffold_4G00307170 Rroxscaffold_4G00307180
rosa_rugosa	Rorug01G0145700.1 Rorug01G0192700 Rorug01G0192900 Rorug01G0193500
rosa_samantha	Rh1AG095900 Rh1AG210700 Rh1AG210800 Rh1BG176200 Rh1BG176800 Rh1BG177100 Rh1BG177200 Rh1CG195000 Rh1CG195100 Rh1DG205900 Rh1DG206300 Rh1DG206600 Rh1DG206700 Rh3DG305500
rosa_wichuraiana	Rw0G011410 Rw1G017570 Rw1G017580 Rw1G017590 Rw1G017800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1787
AccII	CGCG	1 cut(s)	1035
AccIII	TCCGGA	1 cut(s)	311
AciI	CCGC	6 cut(s)	113, 296, 511, 1033, 1525, 1787
AclWI	GGATC	3 cut(s)	710, 1264, 1448
AcoI	YGGCCR	1 cut(s)	450
AcsI	RAATTY	4 cut(s)	923, 934, 1261, 1831
AcuI	CTGAAG	3 cut(s)	328, 1050, 1542
AcyI	GRCGYC	1 cut(s)	147
AfaI	GTAC	2 cut(s)	505, 1188
AfiI	CCNNNNNNNGG	4 cut(s)	380, 500, 507, 1411
AflIII	ACRYGT	1 cut(s)	1222
AgeI	ACCGGT	1 cut(s)	500
AhdI	GACNNNNNGTC	2 cut(s)	557, 1814
AjuI	GAANNNNNNNTTGG	2 cut(s)	23, 55
AleI	CACNNNNGTG	1 cut(s)	572
AluBI	AGCT	6 cut(s)	609, 700, 827, 838, 1199, 1609
AluI	AGCT	6 cut(s)	609, 700, 827, 838, 1199, 1609
Alw21I	GWGCWC	4 cut(s)	72, 372, 489, 1635
Alw26I	GTCTC	2 cut(s)	342, 665
Alw44I	GTGCAC	3 cut(s)	68, 368, 1631
AlwI	GGATC	3 cut(s)	710, 1264, 1448
Aor13HI	TCCGGA	1 cut(s)	311
AoxI	GGCC	3 cut(s)	450, 1522, 1860
ApaLI	GTGCAC	3 cut(s)	68, 368, 1631
ApeKI	GCWGC	3 cut(s)	206, 764, 805
ApoI	RAATTY	4 cut(s)	923, 934, 1261, 1831
AsiGI	ACCGGT	1 cut(s)	500
Asp700I	GAANNNNTTC	1 cut(s)	959
AspA2I	CCTAGG	1 cut(s)	1145
AspLEI	GCGC	1 cut(s)	475
AspS9I	GGNCC	3 cut(s)	332, 1825, 1860
AsuC2I	CCSGG	2 cut(s)	215, 336
AsuHPI	GGTGA	4 cut(s)	586, 1394, 1615, 1679
AvaII	GGWCC	2 cut(s)	332, 1825
AvrII	CCTAGG	1 cut(s)	1145
AxyI	CCTNAGG	1 cut(s)	395
BaeGI	GKGCMC	3 cut(s)	72, 372, 1635
BalI	TGGCCA	1 cut(s)	452
BanII	GRGCYC	1 cut(s)	342
Bbv12I	GWGCWC	4 cut(s)	72, 372, 489, 1635
BbvI	GCAGC	3 cut(s)	193, 751, 817
BccI	CCATC	3 cut(s)	131, 374, 734
BceAI	ACGGC	2 cut(s)	373, 403
BclI	TGATCA	1 cut(s)	576
BcnI	CCSGG	2 cut(s)	215, 336
BcoDI	GTCTC	2 cut(s)	342, 665
BfaI	CTAG	2 cut(s)	182, 1146
BfmI	CTRYAG	1 cut(s)	63
BisI	GCNGC	5 cut(s)	207, 765, 806, 1525, 1788
BlnI	CCTAGG	1 cut(s)	1145
BlsI	GCNGC	5 cut(s)	208, 766, 807, 1526, 1789
Bme1390I	CCNGG	2 cut(s)	215, 336
Bme18I	GGWCC	2 cut(s)	332, 1825
BmeRI	GACNNNNNGTC	2 cut(s)	557, 1814
BmgT120I	GGNCC	3 cut(s)	332, 1825, 1860
BmiI	GGNNCC	3 cut(s)	333, 651, 1464
BmrFI	CCNGG	2 cut(s)	215, 336
BmsI	GCATC	1 cut(s)	1420
BplI	GAGNNNNNCTC	2 cut(s)	145, 177
BpuMI	CCSGG	2 cut(s)	215, 336
BsaAI	YACGTR	2 cut(s)	507, 1540
BsaHI	GRCGYC	1 cut(s)	147
BsaI	GGTCTC	1 cut(s)	665
BsaJI	CCNNGG	8 cut(s)	201, 335, 355, 412, 675, 1116, 1145, 1821
BsaWI	WCCGGW	3 cut(s)	311, 500, 718
Bsc4I	CCNNNNNNNGG	4 cut(s)	380, 500, 507, 1411
Bse118I	RCCGGY	1 cut(s)	500
Bse1I	ACTGG	3 cut(s)	223, 263, 1008
Bse21I	CCTNAGG	1 cut(s)	395
Bse3DI	GCAATG	2 cut(s)	1065, 1237
BseAI	TCCGGA	1 cut(s)	311
BseDI	CCNNGG	8 cut(s)	201, 335, 355, 412, 675, 1116, 1145, 1821
BseGI	GGATG	5 cut(s)	385, 763, 966, 1255, 1435
BseLI	CCNNNNNNNGG	4 cut(s)	380, 500, 507, 1411
BseMI	GCAATG	2 cut(s)	1065, 1237
BseMII	CTCAG	1 cut(s)	459
BseNI	ACTGG	3 cut(s)	223, 263, 1008
BseRI	GAGGAG	1 cut(s)	95
BseSI	GKGCMC	3 cut(s)	72, 372, 1635
BseXI	GCAGC	3 cut(s)	193, 751, 817
BseYI	CCCAGC	1 cut(s)	609
BsgI	GTGCAG	1 cut(s)	309
Bsh1236I	CGCG	1 cut(s)	1035
BshFI	GGCC	3 cut(s)	452, 1524, 1862
BshTI	ACCGGT	1 cut(s)	500
BsiHKAI	GWGCWC	4 cut(s)	72, 372, 489, 1635
BsiSI	CCGG	5 cut(s)	214, 312, 335, 501, 719
BslFI	GGGAC	4 cut(s)	230, 278, 345, 1802
BslI	CCNNNNNNNGG	4 cut(s)	380, 500, 507, 1411
BsmAI	GTCTC	2 cut(s)	342, 665
BsmBI	CGTCTC	1 cut(s)	342
BsmFI	GGGAC	4 cut(s)	230, 278, 345, 1802
BsnI	GGCC	3 cut(s)	452, 1524, 1862
Bso31I	GGTCTC	1 cut(s)	665
Bsp1286I	GDGCHC	5 cut(s)	72, 342, 372, 489, 1635
Bsp13I	TCCGGA	1 cut(s)	311
Bsp143I	GATC	6 cut(s)	576, 715, 973, 1269, 1419, 1440
Bsp19I	CCATGG	1 cut(s)	412
BspACI	CCGC	6 cut(s)	113, 296, 511, 1033, 1525, 1787
BspANI	GGCC	3 cut(s)	452, 1524, 1862
BspCNI	CTCAG	1 cut(s)	460
BspEI	TCCGGA	1 cut(s)	311
BspFNI	CGCG	1 cut(s)	1035
BspHI	TCATGA	1 cut(s)	988
BspLI	GGNNCC	3 cut(s)	333, 651, 1464
BspPI	GGATC	3 cut(s)	710, 1264, 1448
BspQI	GCTCTTC	2 cut(s)	347, 477
BspTNI	GGTCTC	1 cut(s)	665
BsrBI	CCGCTC	1 cut(s)	1787
BsrDI	GCAATG	2 cut(s)	1065, 1237
BsrFI	RCCGGY	1 cut(s)	500
BsrI	ACTGG	3 cut(s)	223, 263, 1008
BssAI	RCCGGY	1 cut(s)	500
BssECI	CCNNGG	8 cut(s)	201, 335, 355, 412, 675, 1116, 1145, 1821
BssMI	GATC	6 cut(s)	576, 715, 973, 1269, 1419, 1440
BssNI	GRCGYC	1 cut(s)	147
BssT1I	CCWWGG	5 cut(s)	412, 675, 1116, 1145, 1821
Bst4CI	ACNGT	6 cut(s)	67, 83, 367, 685, 822, 894
Bst6I	CTCTTC	2 cut(s)	347, 477
BstACI	GRCGYC	1 cut(s)	147
BstBAI	YACGTR	2 cut(s)	507, 1540
BstC8I	GCNNGC	2 cut(s)	6, 810
BstDEI	CTNAG	3 cut(s)	395, 468, 570
BstDSI	CCRYGG	3 cut(s)	201, 355, 412
BstENI	CCTNNNNNAGG	1 cut(s)	1409
BstF5I	GGATG	5 cut(s)	385, 763, 966, 1255, 1435
BstFNI	CGCG	1 cut(s)	1035
BstHHI	GCGC	1 cut(s)	475
BstKTI	GATC	6 cut(s)	579, 718, 976, 1272, 1422, 1443
BstMAI	GTCTC	2 cut(s)	342, 665
BstMBI	GATC	6 cut(s)	576, 715, 973, 1269, 1419, 1440
BstMWI	GCNNNNNNNGC	8 cut(s)	76, 85, 94, 128, 517, 814, 1793, 1802
BstNSI	RCATGY	2 cut(s)	1226, 1283
BstSCI	CCNGG	2 cut(s)	213, 334
BstSFI	CTRYAG	1 cut(s)	63
BstSLI	GKGCMC	3 cut(s)	72, 372, 1635
BstSNI	TACGTA	1 cut(s)	1540
BstUI	CGCG	1 cut(s)	1035
BstV1I	GCAGC	3 cut(s)	193, 751, 817
BstX2I	RGATCY	2 cut(s)	1269, 1440
BstYI	RGATCY	2 cut(s)	1269, 1440
Bsu36I	CCTNAGG	1 cut(s)	395
BsuRI	GGCC	3 cut(s)	452, 1524, 1862
BtgI	CCRYGG	3 cut(s)	201, 355, 412
BtsCI	GGATG	5 cut(s)	385, 763, 966, 1255, 1435
BtsI	GCAGTG	2 cut(s)	24, 1576
BtsIMutI	CAGTG	5 cut(s)	24, 72, 270, 427, 1576
Cac8I	GCNNGC	2 cut(s)	6, 810
CciI	TCATGA	1 cut(s)	988
CfoI	GCGC	1 cut(s)	475
Cfr10I	RCCGGY	1 cut(s)	500
Cfr13I	GGNCC	3 cut(s)	332, 1825, 1860
CseI	GACGC	2 cut(s)	155, 1802
Csp6I	GTAC	2 cut(s)	504, 1187
CspAI	ACCGGT	1 cut(s)	500
CspCI	CAANNNNNGTGG	2 cut(s)	1663, 1698
CviQI	GTAC	2 cut(s)	504, 1187
DdeI	CTNAG	3 cut(s)	395, 468, 570
DpnI	GATC	6 cut(s)	578, 717, 975, 1271, 1421, 1442
DpnII	GATC	6 cut(s)	576, 715, 973, 1269, 1419, 1440
DriI	GACNNNNNGTC	2 cut(s)	557, 1814
EaeI	YGGCCR	1 cut(s)	450
Eam1104I	CTCTTC	2 cut(s)	347, 477
Eam1105I	GACNNNNNGTC	2 cut(s)	557, 1814
EarI	CTCTTC	2 cut(s)	347, 477
Eco105I	TACGTA	1 cut(s)	1540
Eco130I	CCWWGG	5 cut(s)	412, 675, 1116, 1145, 1821
Eco24I	GRGCYC	1 cut(s)	342
Eco31I	GGTCTC	1 cut(s)	665
Eco47I	GGWCC	2 cut(s)	332, 1825
Eco57I	CTGAAG	3 cut(s)	328, 1050, 1542
Eco81I	CCTNAGG	1 cut(s)	395
EcoNI	CCTNNNNNAGG	1 cut(s)	1409
EcoO109I	RGGNCCY	1 cut(s)	1825
EcoRI	GAATTC	1 cut(s)	1261
EcoT14I	CCWWGG	5 cut(s)	412, 675, 1116, 1145, 1821
EcoT38I	GRGCYC	1 cut(s)	342
ErhI	CCWWGG	5 cut(s)	412, 675, 1116, 1145, 1821
Esp3I	CGTCTC	1 cut(s)	342
FalI	AAGNNNNNCTT	4 cut(s)	659, 691, 843, 875
FaqI	GGGAC	4 cut(s)	230, 278, 345, 1802
FauI	CCCGC	1 cut(s)	303
FbaI	TGATCA	1 cut(s)	576
Fnu4HI	GCNGC	5 cut(s)	207, 765, 806, 1525, 1788
FokI	GGATG	5 cut(s)	392, 770, 953, 1262, 1442
FriOI	GRGCYC	1 cut(s)	342
Fsp4HI	GCNGC	5 cut(s)	207, 765, 806, 1525, 1788
FspBI	CTAG	2 cut(s)	182, 1146
GlaI	GCGC	1 cut(s)	474
GluI	GCNGC	5 cut(s)	207, 765, 806, 1525, 1788
GsaI	CCCAGC	1 cut(s)	613
HaeIII	GGCC	3 cut(s)	452, 1524, 1862
HapII	CCGG	5 cut(s)	214, 312, 335, 501, 719
HgaI	GACGC	2 cut(s)	155, 1802
HhaI	GCGC	1 cut(s)	475
Hin1I	GRCGYC	1 cut(s)	147
Hin6I	GCGC	1 cut(s)	473
HinP1I	GCGC	1 cut(s)	473
HincII	GTYRAC	1 cut(s)	177
HindII	GTYRAC	1 cut(s)	177
HindIII	AAGCTT	1 cut(s)	1607
HinfI	GANTC	6 cut(s)	197, 268, 929, 1077, 1108, 1769
HpaII	CCGG	5 cut(s)	214, 312, 335, 501, 719
HphI	GGTGA	4 cut(s)	586, 1394, 1615, 1679
Hpy166II	GTNNAC	8 cut(s)	70, 177, 370, 516, 1308, 1349, 1633, 1670
Hpy188I	TCNGA	5 cut(s)	250, 347, 563, 1267, 1492
Hpy188III	TCNNGA	5 cut(s)	312, 688, 989, 1175, 1206
Hpy8I	GTNNAC	8 cut(s)	70, 177, 370, 516, 1308, 1349, 1633, 1670
HpyCH4III	ACNGT	6 cut(s)	67, 83, 367, 685, 822, 894
HpyCH4IV	ACGT	3 cut(s)	506, 585, 1539
HpyF10VI	GCNNNNNNNGC	8 cut(s)	76, 85, 94, 128, 517, 814, 1793, 1802
HpyF3I	CTNAG	3 cut(s)	395, 468, 570
HpySE526I	ACGT	3 cut(s)	506, 585, 1539
Hsp92I	GRCGYC	1 cut(s)	147
HspAI	GCGC	1 cut(s)	473
Kpn2I	TCCGGA	1 cut(s)	311
Ksp22I	TGATCA	1 cut(s)	576
Kzo9I	GATC	6 cut(s)	576, 715, 973, 1269, 1419, 1440
LguI	GCTCTTC	2 cut(s)	347, 477
LmnI	GCTCC	5 cut(s)	527, 1204, 1462, 1479, 1784
Lsp1109I	GCAGC	3 cut(s)	193, 751, 817
LweI	GCATC	1 cut(s)	1420
MaeI	CTAG	2 cut(s)	182, 1146
MaeII	ACGT	3 cut(s)	506, 585, 1539
MaeIII	GTNAC	5 cut(s)	45, 265, 383, 496, 1709
MalI	GATC	6 cut(s)	578, 717, 975, 1271, 1421, 1442
MbiI	CCGCTC	1 cut(s)	1787
MboI	GATC	6 cut(s)	576, 715, 973, 1269, 1419, 1440
MboII	GAAGA	4 cut(s)	334, 494, 896, 1712
MflI	RGATCY	2 cut(s)	1269, 1440
MhlI	GDGCHC	5 cut(s)	72, 342, 372, 489, 1635
MlsI	TGGCCA	1 cut(s)	452
MluNI	TGGCCA	1 cut(s)	452
MlyI	GAGTC	2 cut(s)	191, 262
MmeI	TCCRAC	3 cut(s)	459, 541, 1109
Mox20I	TGGCCA	1 cut(s)	452
MroI	TCCGGA	1 cut(s)	311
MroXI	GAANNNNTTC	1 cut(s)	959
MscI	TGGCCA	1 cut(s)	452
MseI	TTAA	5 cut(s)	801, 939, 1038, 1044, 1611
MslI	CAYNNNNRTG	3 cut(s)	446, 572, 1601
Msp20I	TGGCCA	1 cut(s)	452
MspI	CCGG	5 cut(s)	214, 312, 335, 501, 719
MspR9I	CCNGG	2 cut(s)	215, 336
MvnI	CGCG	1 cut(s)	1035
MwoI	GCNNNNNNNGC	8 cut(s)	76, 85, 94, 128, 517, 814, 1793, 1802
NciI	CCSGG	2 cut(s)	215, 336
NcoI	CCATGG	1 cut(s)	412
NdeII	GATC	6 cut(s)	576, 715, 973, 1269, 1419, 1440
NlaIV	GGNNCC	3 cut(s)	333, 651, 1464
NmuCI	GTSAC	4 cut(s)	45, 265, 383, 496
NspI	RCATGY	2 cut(s)	1226, 1283
OliI	CACNNNNGTG	1 cut(s)	572
PagI	TCATGA	1 cut(s)	988
PciI	ACATGT	1 cut(s)	1222
PciSI	GCTCTTC	2 cut(s)	347, 477
PcsI	WCGNNNNNNNCGW	1 cut(s)	198
PdmI	GAANNNNTTC	1 cut(s)	959
PfeI	GAWTC	4 cut(s)	929, 1077, 1108, 1769
PfoI	TCCNGGA	1 cut(s)	213
PinAI	ACCGGT	1 cut(s)	500
PkrI	GCNGC	5 cut(s)	208, 766, 807, 1526, 1789
PleI	GAGTC	2 cut(s)	191, 262
PpsI	GAGTC	2 cut(s)	191, 262
Ppu21I	YACGTR	2 cut(s)	507, 1540
PpuMI	RGGWCCY	1 cut(s)	1825
PscI	ACATGT	1 cut(s)	1222
Psp5II	RGGWCCY	1 cut(s)	1825
PspFI	CCCAGC	1 cut(s)	609
PspN4I	GGNNCC	3 cut(s)	333, 651, 1464
PspPI	GGNCC	3 cut(s)	332, 1825, 1860
PspPPI	RGGWCCY	1 cut(s)	1825
PsuI	RGATCY	2 cut(s)	1269, 1440
RsaI	GTAC	2 cut(s)	505, 1188
RsaNI	GTAC	2 cut(s)	504, 1187
RseI	CAYNNNNRTG	3 cut(s)	446, 572, 1601
SapI	GCTCTTC	2 cut(s)	347, 477
SaqAI	TTAA	5 cut(s)	801, 939, 1038, 1044, 1611
SatI	GCNGC	5 cut(s)	207, 765, 806, 1525, 1788
Sau3AI	GATC	6 cut(s)	576, 715, 973, 1269, 1419, 1440
Sau96I	GGNCC	3 cut(s)	332, 1825, 1860
SchI	GAGTC	2 cut(s)	191, 262
ScrFI	CCNGG	2 cut(s)	215, 336
SduI	GDGCHC	5 cut(s)	72, 342, 372, 489, 1635
SfaNI	GCATC	1 cut(s)	1420
SfcI	CTRYAG	1 cut(s)	63
SinI	GGWCC	2 cut(s)	332, 1825
SmiMI	CAYNNNNRTG	3 cut(s)	446, 572, 1601
SnaBI	TACGTA	1 cut(s)	1540
SsiI	CCGC	6 cut(s)	113, 296, 511, 1033, 1525, 1787
SspI	AATATT	1 cut(s)	39
SspMI	CTAG	2 cut(s)	182, 1146
StyD4I	CCNGG	2 cut(s)	213, 334
StyI	CCWWGG	5 cut(s)	412, 675, 1116, 1145, 1821
TaaI	ACNGT	6 cut(s)	67, 83, 367, 685, 822, 894
TaiI	ACGT	3 cut(s)	509, 588, 1542
TaqI	TCGA	6 cut(s)	192, 840, 1174, 1353, 1361, 1418
TauI	GCSGC	2 cut(s)	1527, 1790
TfiI	GAWTC	4 cut(s)	929, 1077, 1108, 1769
Tru1I	TTAA	5 cut(s)	801, 939, 1038, 1044, 1611
Tru9I	TTAA	5 cut(s)	801, 939, 1038, 1044, 1611
TscAI	CASTG	5 cut(s)	31, 72, 270, 427, 1576
TseFI	GTSAC	4 cut(s)	45, 265, 383, 496
TseI	GCWGC	3 cut(s)	206, 764, 805
Tsp45I	GTSAC	4 cut(s)	45, 265, 383, 496
TspDTI	ATGAA	9 cut(s)	436, 936, 952, 973, 977, 1266, 1382, 1484, 1838
TspGWI	ACGGA	2 cut(s)	64, 190
TspRI	CASTG	5 cut(s)	31, 72, 270, 427, 1576
VneI	GTGCAC	3 cut(s)	68, 368, 1631
VpaK11BI	GGWCC	2 cut(s)	332, 1825
XagI	CCTNNNNNAGG	1 cut(s)	1409
XapI	RAATTY	4 cut(s)	923, 934, 1261, 1831
XceI	RCATGY	2 cut(s)	1226, 1283
XcmI	CCANNNNNNNNNTGG	1 cut(s)	419
XmaJI	CCTAGG	1 cut(s)	1145
XmnI	GAANNNNTTC	1 cut(s)	959
XspI	CTAG	2 cut(s)	182, 1146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.