Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0001225

Physical Location & Seq

Genomic Coordinates Forward (+)

8809177 .. 8811832

Gene Structure 2656 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g09530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGATGCTAGCTACTATCATTTGCTTTCATTGCCACCTCCTAAAACTACCAAAAATGCAAGCCAACCCCTTCCAAGTTATTCCCAAACTAATATTCCCCTCACTGATAAAGCTGCCTCCGGTGCACCGATCTCTGTCACCACCACCCACCAAGCCACCGCGTGCGATATCCATCTCCACGCCCGGTGAAACCAATCATGATCCTATTATTTCATCAACCGTAGACGTTGTTGATGATTCAGTGGCTGCATTTTGGGACTACCAATTTCTCTTTGTGTCCCAACGCTCCGAACAAACTGAACCCATCACGCTCAGAGTCGTGGAGGGTTCGGTTCCACCTGACTTTCCCTCTGGCACGTACTACTTGACAGGGCCGGGGCTCTTCAGTGACGACCATGGCTCGACGGTGCACCCATTAGACGGTCACGGATACCTTAGGGCTTTTCAGTTTGATGGCTTTGGCGGAGAAGTCAAGTTCATGGCTAAGTACGTGAAAACTGAGGCTCAAGTTGAAGAGCACGACCCTACGACTGACAGGTGGCGATTCACACATAGGGGGCCGTTTTCGGTGTTGAAAGGTGGACAGAAAGTTGGGAATACAAAGGTTATGAAGAATGTGGCAAATACTAGTGTCTTGAGGTGGGGCCGGAAGCTGTTGTGCTTGTGGGAAGGTGGCAACCCATATGAGATTGAATCTGAGACGTTGGATACGGTAGGGAAGGTAAGTTTGATGGAAGACTGTGATTCGGGGACGGAGAGTGGAGACGGTGGTGGTGGTGGTGGTGGAATGTGGGATGTGGCTGCGAGGTTGCTCAAACCGATTTTGTACGCAGCTGAGTGTTTAAGATGCCTCCGAAGCGACTATTGTCTCATTATAAGCTCGATGCTCGCAACAACAGGCTTCTTATGGTGTCATGCAATGCAGAGGATATGCTATTACCTTGCAGTAATTTTACATTTTATGAATTTGATTCAGATTTCAAGGTGCTGGGAAAGCAAGAGTTCAACATCCCTGATCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001763 GO:0003674 GO:0003824 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008300 GO:0008610 GO:0009056 GO:0009058 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010016 GO:0010033 GO:0010223 GO:0010346 GO:0010436 GO:0010817 GO:0016042 GO:0016106 GO:0016114 GO:0016119 GO:0016121 GO:0016491 GO:0016701 GO:0016702 GO:0018130 GO:0032501 GO:0032502 GO:0042214 GO:0042221 GO:0042445 GO:0042446 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0045549 GO:0046247 GO:0046483 GO:0048367 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051213 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901334 GO:1901336 GO:1901360 GO:1901362 GO:1901575 GO:1901576 GO:1901600 GO:1901601 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00906 map00906

Pfam Domains

Protein Families

RPE65

Protein Analysis

341

Amino Acids

37.72

Weight (kDa)

6.41

Isoelectric Point (pI)

45.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPE65	PF03055	92 - 243	5.9e-33	Retinal pigment epithelial membrane protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44990 AT2G44990 AT2G44990
fragaria_vesca	FvH4_7g10450
malus_domestica	MD07G1110600.v1.1
prunus_persica	Prupe.2G133900_v2.0.a1
pyrus_communis	pycom07g09530
rosa_chinensis	RchiOBHm_Chr1g0342921 RchiOBHm_Chr1g0342931 RchiOBHm_Chr1g0348141 RchiOBHm_Chr1g0348171 RchiOBHm_Chr1g0348201 RchiOBHm_Chr2g0136091 RchiOBHm_Chr7g0229961
rosa_laevigata	RLG00000028678 RLG00000028682 RLG00000028684 RLG00000028685 RLG00000028686
rosa_multiflora	Rmu_co8414565.1_g000001 Rmu_co8499605.1_g000001 Rmu_sc0001563.1_g000031 Rmu_sc0001890.1_g000013 Rmu_sc0001890.1_g000015 Rmu_sc0002209.1_g000017 Rmu_sc0003991.1_g000009 Rmu_sc0004502.1_g000011 Rmu_sc0004502.1_g000018 Rmu_sc0005046.1_g000018
rosa_roxburghii	Rroxscaffold_4G00307110 Rroxscaffold_4G00307160 Rroxscaffold_4G00307170 Rroxscaffold_4G00307180
rosa_rugosa	Rorug01G0145700.1 Rorug01G0192700 Rorug01G0192900 Rorug01G0193500
rosa_samantha	Rh1AG095900 Rh1AG210700 Rh1AG210800 Rh1BG176200 Rh1BG176800 Rh1BG177100 Rh1BG177200 Rh1CG195000 Rh1CG195100 Rh1DG205900 Rh1DG206300 Rh1DG206600 Rh1DG206700 Rh3DG305500
rosa_wichuraiana	Rw0G011410 Rw1G017570 Rw1G017580 Rw1G017590 Rw1G017800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	875
AccI	GTMKAC	1 cut(s)	222
AccII	CGCG	1 cut(s)	160
AciI	CCGC	2 cut(s)	158, 462
AclWI	GGATC	1 cut(s)	194
AcsI	RAATTY	1 cut(s)	964
AcuI	CTGAAG	1 cut(s)	367
AdeI	CACNNNGTG	1 cut(s)	161
AfaI	GTAC	3 cut(s)	359, 488, 827
AfiI	CCNNNNNNNGG	1 cut(s)	419
AgsI	TTSAA	5 cut(s)	512, 574, 692, 981, 1005
AhlI	ACTAGT	1 cut(s)	626
AjuI	GAANNNNNNNTTGG	2 cut(s)	77, 109
AluBI	AGCT	5 cut(s)	11, 112, 652, 833, 879
AluI	AGCT	5 cut(s)	11, 112, 652, 833, 879
Alw21I	GWGCWC	3 cut(s)	126, 411, 519
Alw26I	GTCTC	3 cut(s)	692, 756, 872
Alw44I	GTGCAC	2 cut(s)	122, 407
AlwI	GGATC	1 cut(s)	194
AlwNI	CAGNNNCTG	1 cut(s)	245
AoxI	GGCC	3 cut(s)	371, 557, 643
ApaLI	GTGCAC	2 cut(s)	122, 407
ApeKI	GCWGC	4 cut(s)	112, 245, 800, 830
ApoI	RAATTY	1 cut(s)	964
AspS9I	GGNCC	3 cut(s)	371, 557, 643
AsuC2I	CCSGG	2 cut(s)	183, 375
AsuHPI	GGTGA	2 cut(s)	129, 197
AsuNHI	GCTAGC	1 cut(s)	7
AxyI	CCTNAGG	1 cut(s)	434
BaeGI	GKGCMC	2 cut(s)	126, 411
BanII	GRGCYC	1 cut(s)	381
BbsI	GAAGAC	1 cut(s)	741
Bbv12I	GWGCWC	3 cut(s)	126, 411, 519
BbvI	GCAGC	4 cut(s)	99, 232, 787, 842
BccI	CCATC	4 cut(s)	179, 311, 446, 724
BceAI	ACGGC	1 cut(s)	544
BciVI	GTATCC	2 cut(s)	422, 700
BclI	TGATCA	1 cut(s)	1014
BcnI	CCSGG	2 cut(s)	183, 375
BcoDI	GTCTC	3 cut(s)	692, 756, 872
BcuI	ACTAGT	1 cut(s)	626
BfaI	CTAG	2 cut(s)	8, 627
BfuI	GTATCC	2 cut(s)	422, 700
BisI	GCNGC	4 cut(s)	113, 246, 801, 831
BlsI	GCNGC	4 cut(s)	114, 247, 802, 832
Bme1390I	CCNGG	2 cut(s)	183, 375
BmgT120I	GGNCC	3 cut(s)	371, 557, 643
BmiI	GGNNCC	3 cut(s)	333, 558, 644
BmrFI	CCNGG	2 cut(s)	183, 375
BmsI	GCATC	2 cut(s)	836, 873
BmtI	GCTAGC	1 cut(s)	11
BoxI	GACNNNNGTC	1 cut(s)	864
BpiI	GAAGAC	1 cut(s)	741
BpuEI	CTTGAG	2 cut(s)	489, 655
BpuMI	CCSGG	2 cut(s)	183, 375
BsaAI	YACGTR	2 cut(s)	357, 490
BsaBI	GATNNNNATC	1 cut(s)	170
BsaJI	CCNNGG	2 cut(s)	374, 394
BsaWI	WCCGGW	1 cut(s)	118
Bsc4I	CCNNNNNNNGG	1 cut(s)	419
Bse21I	CCTNAGG	1 cut(s)	434
Bse3DI	GCAATG	2 cut(s)	28, 924
Bse8I	GATNNNNATC	1 cut(s)	170
BseDI	CCNNGG	2 cut(s)	374, 394
BseGI	GGATG	2 cut(s)	799, 1007
BseJI	GATNNNNATC	1 cut(s)	170
BseLI	CCNNNNNNNGG	1 cut(s)	419
BseMI	GCAATG	2 cut(s)	28, 924
BseMII	CTCAG	4 cut(s)	325, 489, 687, 825
BseSI	GKGCMC	2 cut(s)	126, 411
BseXI	GCAGC	4 cut(s)	99, 232, 787, 842
BseYI	CCCAGC	1 cut(s)	987
Bsh1236I	CGCG	1 cut(s)	160
BshFI	GGCC	3 cut(s)	373, 559, 645
BsiHKAI	GWGCWC	3 cut(s)	126, 411, 519
BsiSI	CCGG	4 cut(s)	119, 183, 374, 646
BslFI	GGGAC	3 cut(s)	262, 269, 763
BslI	CCNNNNNNNGG	1 cut(s)	419
BsmAI	GTCTC	3 cut(s)	692, 756, 872
BsmBI	CGTCTC	2 cut(s)	692, 756
BsmFI	GGGAC	3 cut(s)	262, 269, 763
BsnI	GGCC	3 cut(s)	373, 559, 645
Bsp1286I	GDGCHC	4 cut(s)	126, 381, 411, 519
Bsp143I	GATC	3 cut(s)	128, 199, 1014
Bsp19I	CCATGG	1 cut(s)	394
BspACI	CCGC	2 cut(s)	158, 462
BspANI	GGCC	3 cut(s)	373, 559, 645
BspCNI	CTCAG	4 cut(s)	324, 490, 688, 826
BspFNI	CGCG	1 cut(s)	160
BspHI	TCATGA	1 cut(s)	196
BspLI	GGNNCC	3 cut(s)	333, 558, 644
BspOI	GCTAGC	1 cut(s)	11
BspPI	GGATC	1 cut(s)	194
BspQI	GCTCTTC	2 cut(s)	386, 507
BsrDI	GCAATG	2 cut(s)	28, 924
BssECI	CCNNGG	2 cut(s)	374, 394
BssMI	GATC	3 cut(s)	128, 199, 1014
BssT1I	CCWWGG	1 cut(s)	394
Bst4CI	ACNGT	6 cut(s)	220, 406, 422, 712, 740, 767
Bst6I	CTCTTC	2 cut(s)	386, 507
BstBAI	YACGTR	2 cut(s)	357, 490
BstC8I	GCNNGC	4 cut(s)	9, 60, 162, 888
BstDEI	CTNAG	6 cut(s)	311, 434, 483, 498, 696, 834
BstDSI	CCRYGG	1 cut(s)	394
BstF5I	GGATG	2 cut(s)	799, 1007
BstFNI	CGCG	1 cut(s)	160
BstKTI	GATC	3 cut(s)	131, 202, 1017
BstMAI	GTCTC	3 cut(s)	692, 756, 872
BstMBI	GATC	3 cut(s)	128, 199, 1014
BstMWI	GCNNNNNNNGC	4 cut(s)	30, 121, 855, 993
BstPAI	GACNNNNGTC	1 cut(s)	864
BstSCI	CCNGG	2 cut(s)	181, 373
BstSLI	GKGCMC	2 cut(s)	126, 411
BstUI	CGCG	1 cut(s)	160
BstV1I	GCAGC	4 cut(s)	99, 232, 787, 842
BstV2I	GAAGAC	1 cut(s)	741
Bsu36I	CCTNAGG	1 cut(s)	434
BsuI	GTATCC	2 cut(s)	422, 700
BsuRI	GGCC	3 cut(s)	373, 559, 645
BtgI	CCRYGG	1 cut(s)	394
BtsCI	GGATG	2 cut(s)	799, 1007
BtsIMutI	CAGTG	3 cut(s)	101, 246, 391
Cac8I	GCNNGC	4 cut(s)	9, 60, 162, 888
CaiI	CAGNNNCTG	1 cut(s)	245
CciI	TCATGA	1 cut(s)	196
Cfr13I	GGNCC	3 cut(s)	371, 557, 643
Csp6I	GTAC	3 cut(s)	358, 487, 826
CviAII	CATG	4 cut(s)	197, 395, 478, 914
CviQI	GTAC	3 cut(s)	358, 487, 826
DdeI	CTNAG	6 cut(s)	311, 434, 483, 498, 696, 834
DpnI	GATC	3 cut(s)	130, 201, 1016
DpnII	GATC	3 cut(s)	128, 199, 1014
DraIII	CACNNNGTG	1 cut(s)	161
Eam1104I	CTCTTC	2 cut(s)	386, 507
EarI	CTCTTC	2 cut(s)	386, 507
EciI	GGCGGA	1 cut(s)	477
Eco130I	CCWWGG	1 cut(s)	394
Eco24I	GRGCYC	1 cut(s)	381
Eco32I	GATATC	1 cut(s)	168
Eco57I	CTGAAG	1 cut(s)	367
Eco81I	CCTNAGG	1 cut(s)	434
EcoRV	GATATC	1 cut(s)	168
EcoT14I	CCWWGG	1 cut(s)	394
EcoT38I	GRGCYC	1 cut(s)	381
ErhI	CCWWGG	1 cut(s)	394
Esp3I	CGTCTC	2 cut(s)	692, 756
FaeI	CATG	4 cut(s)	200, 398, 481, 917
FaqI	GGGAC	3 cut(s)	262, 269, 763
FatI	CATG	4 cut(s)	196, 394, 477, 913
FauNDI	CATATG	1 cut(s)	682
FbaI	TGATCA	1 cut(s)	1014
FblI	GTMKAC	1 cut(s)	222
Fnu4HI	GCNGC	4 cut(s)	113, 246, 801, 831
FokI	GGATG	2 cut(s)	806, 994
FriOI	GRGCYC	1 cut(s)	381
Fsp4HI	GCNGC	4 cut(s)	113, 246, 801, 831
FspBI	CTAG	2 cut(s)	8, 627
GluI	GCNGC	4 cut(s)	113, 246, 801, 831
GsaI	CCCAGC	1 cut(s)	991
HaeIII	GGCC	3 cut(s)	373, 559, 645
HapII	CCGG	4 cut(s)	119, 183, 374, 646
Hin1II	CATG	4 cut(s)	200, 398, 481, 917
HinfI	GANTC	6 cut(s)	236, 315, 543, 692, 743, 970
HpaII	CCGG	4 cut(s)	119, 183, 374, 646
HphI	GGTGA	2 cut(s)	129, 197
Hpy166II	GTNNAC	4 cut(s)	124, 223, 409, 581
Hpy188I	TCNGA	5 cut(s)	289, 314, 697, 854, 975
Hpy188III	TCNNGA	2 cut(s)	197, 634
Hpy8I	GTNNAC	4 cut(s)	124, 223, 409, 581
Hpy99I	CGWCG	1 cut(s)	406
HpyAV	CCTTC	3 cut(s)	79, 662, 712
HpyCH4III	ACNGT	6 cut(s)	220, 406, 422, 712, 740, 767
HpyCH4IV	ACGT	4 cut(s)	225, 356, 489, 701
HpyCH4V	TGCA	7 cut(s)	58, 124, 248, 409, 917, 922, 944
HpyF10VI	GCNNNNNNNGC	4 cut(s)	30, 121, 855, 993
HpyF3I	CTNAG	6 cut(s)	311, 434, 483, 498, 696, 834
HpySE526I	ACGT	4 cut(s)	225, 356, 489, 701
Hsp92II	CATG	4 cut(s)	200, 398, 481, 917
Ksp22I	TGATCA	1 cut(s)	1014
Kzo9I	GATC	3 cut(s)	128, 199, 1014
LguI	GCTCTTC	2 cut(s)	386, 507
LmnI	GCTCC	1 cut(s)	290
Lsp1109I	GCAGC	4 cut(s)	99, 232, 787, 842
LweI	GCATC	2 cut(s)	836, 873
MaeI	CTAG	2 cut(s)	8, 627
MaeII	ACGT	4 cut(s)	225, 356, 489, 701
MaeIII	GTNAC	3 cut(s)	135, 386, 422
MalI	GATC	3 cut(s)	130, 201, 1016
MboI	GATC	3 cut(s)	128, 199, 1014
MboII	GAAGA	4 cut(s)	373, 524, 622, 746
MhlI	GDGCHC	4 cut(s)	126, 381, 411, 519
MluCI	AATT	3 cut(s)	263, 948, 964
MlyI	GAGTC	1 cut(s)	324
MmeI	TCCRAC	1 cut(s)	684
MseI	TTAA	1 cut(s)	842
MspA1I	CMGCKG	1 cut(s)	833
MspI	CCGG	4 cut(s)	119, 183, 374, 646
MspR9I	CCNGG	2 cut(s)	183, 375
MvnI	CGCG	1 cut(s)	160
MwoI	GCNNNNNNNGC	4 cut(s)	30, 121, 855, 993
NciI	CCSGG	2 cut(s)	183, 375
NcoI	CCATGG	1 cut(s)	394
NdeI	CATATG	1 cut(s)	682
NdeII	GATC	3 cut(s)	128, 199, 1014
NheI	GCTAGC	1 cut(s)	7
NlaIII	CATG	4 cut(s)	200, 398, 481, 917
NlaIV	GGNNCC	3 cut(s)	333, 558, 644
NmuCI	GTSAC	3 cut(s)	135, 386, 422
PagI	TCATGA	1 cut(s)	196
PciSI	GCTCTTC	2 cut(s)	386, 507
PfeI	GAWTC	5 cut(s)	236, 543, 692, 743, 970
PkrI	GCNGC	4 cut(s)	114, 247, 802, 832
PleI	GAGTC	1 cut(s)	323
PpsI	GAGTC	1 cut(s)	323
Ppu21I	YACGTR	2 cut(s)	357, 490
PshAI	GACNNNNGTC	1 cut(s)	864
PsiI	TTATAA	1 cut(s)	875
PspFI	CCCAGC	1 cut(s)	987
PspN4I	GGNNCC	3 cut(s)	333, 558, 644
PspPI	GGNCC	3 cut(s)	371, 557, 643
PstNI	CAGNNNCTG	1 cut(s)	245
PvuII	CAGCTG	1 cut(s)	833
RsaI	GTAC	3 cut(s)	359, 488, 827
RsaNI	GTAC	3 cut(s)	358, 487, 826
SapI	GCTCTTC	2 cut(s)	386, 507
SaqAI	TTAA	1 cut(s)	842
SatI	GCNGC	4 cut(s)	113, 246, 801, 831
Sau3AI	GATC	3 cut(s)	128, 199, 1014
Sau96I	GGNCC	3 cut(s)	371, 557, 643
SchI	GAGTC	1 cut(s)	324
ScrFI	CCNGG	2 cut(s)	183, 375
SduI	GDGCHC	4 cut(s)	126, 381, 411, 519
SfaNI	GCATC	2 cut(s)	836, 873
SmlI	CTYRAG	2 cut(s)	504, 634
SmoI	CTYRAG	2 cut(s)	504, 634
SpeI	ACTAGT	1 cut(s)	626
Sse9I	AATT	3 cut(s)	263, 948, 964
SsiI	CCGC	2 cut(s)	158, 462
SspI	AATATT	1 cut(s)	93
SspMI	CTAG	2 cut(s)	8, 627
StyD4I	CCNGG	2 cut(s)	181, 373
StyI	CCWWGG	1 cut(s)	394
TaaI	ACNGT	6 cut(s)	220, 406, 422, 712, 740, 767
TaiI	ACGT	4 cut(s)	228, 359, 492, 704
TaqI	TCGA	2 cut(s)	401, 881
TasI	AATT	3 cut(s)	263, 948, 964
TfiI	GAWTC	5 cut(s)	236, 543, 692, 743, 970
Tru1I	TTAA	1 cut(s)	842
Tru9I	TTAA	1 cut(s)	842
TscAI	CASTG	3 cut(s)	108, 246, 391
TseFI	GTSAC	3 cut(s)	135, 386, 422
TseI	GCWGC	4 cut(s)	112, 245, 800, 830
Tsp45I	GTSAC	3 cut(s)	135, 386, 422
TspDTI	ATGAA	5 cut(s)	17, 201, 466, 623, 977
TspGWI	ACGGA	2 cut(s)	441, 767
TspRI	CASTG	3 cut(s)	108, 246, 391
VneI	GTGCAC	2 cut(s)	122, 407
XapI	RAATTY	1 cut(s)	964
XmiI	GTMKAC	1 cut(s)	222
XspI	CTAG	2 cut(s)	8, 627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.