Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8414565.1

Orthogroup ID

OG0001225

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 739

Gene Structure 738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8414565.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

atgcaaaccaaccacttccaaatcattgttccaaaaccaatattcccctcaatgataaatctaccggcggtgcaccgccctcctccgtcgacgccgctgcttaaacctccacgtgccatctccatttccacacccaacggaagtactactccgaccaccaccgtttcgaccccagacgtggtcgatgactccgttgccgcattctgggactaccagttcctcttcgtctcgcaacgctctgaaacaaccaaaccagtgacactccgagtggttgaaggcgcagtcccgccggagtttccttccggaacgtactacttgacgggaccggggctcttcagcgacgaccatggctccactgtgcaccctttggacggtcacggctacctcagggcttttaggttcgatgggaataatggggacgaggtgaaggtcaagttcatggccaagtacgtgaagactgaggcgcaggtggaagagcacgatccggttaccggagcgtggcggttcacgcacagggggcctttttcggtgttgaagggaggacagaaagttgggaacactaaggtgatgaagaatgtggcgaatactagtgtgttgagctggggcgggaggctgttgtgcttgtgggaaggtggcgacccgtatgagattgaaccggagactttggctactgtcgggaaggtcaagctgatggagggttgtgatccggtggtggtgagtggttgcggtggcggtggc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001763 GO:0003674 GO:0003824 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008300 GO:0008610 GO:0009056 GO:0009058 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010016 GO:0010033 GO:0010223 GO:0010346 GO:0010436 GO:0010817 GO:0016042 GO:0016106 GO:0016114 GO:0016119 GO:0016121 GO:0016491 GO:0016701 GO:0016702 GO:0018130 GO:0032501 GO:0032502 GO:0042214 GO:0042221 GO:0042445 GO:0042446 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0045549 GO:0046247 GO:0046483 GO:0048367 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051213 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901334 GO:1901336 GO:1901360 GO:1901362 GO:1901575 GO:1901576 GO:1901600 GO:1901601 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00906 map00906

Pfam Domains

Protein Families

RPE65

Protein Analysis

246

Amino Acids

26.61

Weight (kDa)

6.38

Isoelectric Point (pI)

27.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44990 AT2G44990 AT2G44990
fragaria_vesca	FvH4_7g10450
malus_domestica	MD07G1110600.v1.1
prunus_persica	Prupe.2G133900_v2.0.a1
pyrus_communis	pycom07g09530
rosa_chinensis	RchiOBHm_Chr1g0342921 RchiOBHm_Chr1g0342931 RchiOBHm_Chr1g0348141 RchiOBHm_Chr1g0348171 RchiOBHm_Chr1g0348201 RchiOBHm_Chr2g0136091 RchiOBHm_Chr7g0229961
rosa_laevigata	RLG00000028678 RLG00000028682 RLG00000028684 RLG00000028685 RLG00000028686
rosa_multiflora	Rmu_co8414565.1_g000001 Rmu_co8499605.1_g000001 Rmu_sc0001563.1_g000031 Rmu_sc0001890.1_g000013 Rmu_sc0001890.1_g000015 Rmu_sc0002209.1_g000017 Rmu_sc0003991.1_g000009 Rmu_sc0004502.1_g000011 Rmu_sc0004502.1_g000018 Rmu_sc0005046.1_g000018
rosa_roxburghii	Rroxscaffold_4G00307110 Rroxscaffold_4G00307160 Rroxscaffold_4G00307170 Rroxscaffold_4G00307180
rosa_rugosa	Rorug01G0145700.1 Rorug01G0192700 Rorug01G0192900 Rorug01G0193500
rosa_samantha	Rh1AG095900 Rh1AG210700 Rh1AG210800 Rh1BG176200 Rh1BG176800 Rh1BG177100 Rh1BG177200 Rh1CG195000 Rh1CG195100 Rh1DG205900 Rh1DG206300 Rh1DG206600 Rh1DG206700 Rh3DG305500
rosa_wichuraiana	Rw0G011410 Rw1G017570 Rw1G017580 Rw1G017590 Rw1G017800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	457
Acc36I	ACCTGC	1 cut(s)	457
AccI	GTMKAC	1 cut(s)	89
AccIII	TCCGGA	1 cut(s)	302
AciI	CCGC	9 cut(s)	68, 76, 95, 198, 287, 502, 606, 726, 732
AclWI	GGATC	2 cut(s)	476, 698
AcoI	YGGCCR	1 cut(s)	441
AcuI	CTGAAG	1 cut(s)	319
AcvI	CACGTG	1 cut(s)	113
AcyI	GRCGYC	1 cut(s)	92
AfaI	GTAC	3 cut(s)	145, 311, 449
AfiI	CCNNNNNNNGG	5 cut(s)	178, 204, 371, 491, 498
AgsI	TTSAA	3 cut(s)	275, 535, 653
AhlI	ACTAGT	1 cut(s)	587
AjiI	CACGTC	1 cut(s)	178
AjuI	GAANNNNNNNTTGG	2 cut(s)	12, 44
AleI	CACNNNNGTG	1 cut(s)	563
AloI	GAACNNNNNNTCC	2 cut(s)	200, 232
AluBI	AGCT	2 cut(s)	600, 688
AluI	AGCT	2 cut(s)	600, 688
Alw21I	GWGCWC	3 cut(s)	75, 363, 480
Alw26I	GTCTC	2 cut(s)	232, 653
Alw44I	GTGCAC	2 cut(s)	71, 359
AlwI	GGATC	2 cut(s)	476, 698
Aor13HI	TCCGGA	1 cut(s)	302
AoxI	GGCC	2 cut(s)	441, 518
ApaLI	GTGCAC	2 cut(s)	71, 359
ApeKI	GCWGC	1 cut(s)	97
AspLEI	GCGC	2 cut(s)	281, 466
AspS9I	GGNCC	2 cut(s)	323, 518
AsuC2I	CCSGG	1 cut(s)	327
AsuHPI	GGTGA	3 cut(s)	436, 577, 727
AvaII	GGWCC	1 cut(s)	323
AxyI	CCTNAGG	1 cut(s)	386
BaeGI	GKGCMC	2 cut(s)	75, 363
BalI	TGGCCA	1 cut(s)	443
BanII	GRGCYC	1 cut(s)	333
BbrPI	CACGTG	1 cut(s)	113
BbsI	GAAGAC	1 cut(s)	461
Bbv12I	GWGCWC	3 cut(s)	75, 363, 480
BbvI	GCAGC	1 cut(s)	84
BccI	CCATC	3 cut(s)	125, 398, 685
BceAI	ACGGC	1 cut(s)	394
BcgI	CGANNNNNNTGC	2 cut(s)	79, 113
BcnI	CCSGG	1 cut(s)	327
BcoDI	GTCTC	2 cut(s)	232, 653
BcuI	ACTAGT	1 cut(s)	587
BfaI	CTAG	1 cut(s)	588
BfuAI	ACCTGC	1 cut(s)	457
BisI	GCNGC	3 cut(s)	95, 98, 198
BlsI	GCNGC	3 cut(s)	96, 99, 199
BmcAI	AGTACT	1 cut(s)	145
Bme1390I	CCNGG	1 cut(s)	327
Bme18I	GGWCC	1 cut(s)	323
BmgBI	CACGTC	1 cut(s)	178
BmgT120I	GGNCC	2 cut(s)	323, 518
BmiI	GGNNCC	3 cut(s)	324, 352, 519
BmrFI	CCNGG	1 cut(s)	327
BpiI	GAAGAC	1 cut(s)	461
BpuMI	CCSGG	1 cut(s)	327
BsaAI	YACGTR	2 cut(s)	113, 451
BsaHI	GRCGYC	1 cut(s)	92
BsaJI	CCNNGG	2 cut(s)	326, 346
BsaWI	WCCGGW	5 cut(s)	302, 484, 491, 655, 706
BsaXI	ACNNNNNCTCC	2 cut(s)	335, 365
Bsc4I	CCNNNNNNNGG	5 cut(s)	178, 204, 371, 491, 498
Bse118I	RCCGGY	1 cut(s)	64
Bse1I	ACTGG	2 cut(s)	214, 254
Bse21I	CCTNAGG	1 cut(s)	386
BseAI	TCCGGA	1 cut(s)	302
BseDI	CCNNGG	2 cut(s)	326, 346
BseLI	CCNNNNNNNGG	5 cut(s)	178, 204, 371, 491, 498
BseMII	CTCAG	2 cut(s)	400, 450
BseNI	ACTGG	2 cut(s)	214, 254
BseRI	GAGGAG	1 cut(s)	72
BseSI	GKGCMC	2 cut(s)	75, 363
BseXI	GCAGC	1 cut(s)	84
BseYI	CCCAGC	1 cut(s)	600
BshFI	GGCC	2 cut(s)	443, 520
BsiHKAI	GWGCWC	3 cut(s)	75, 363, 480
BsiSI	CCGG	8 cut(s)	65, 290, 303, 326, 485, 492, 656, 707
BslFI	GGGAC	4 cut(s)	221, 269, 336, 431
BslI	CCNNNNNNNGG	5 cut(s)	178, 204, 371, 491, 498
BsmAI	GTCTC	2 cut(s)	232, 653
BsmBI	CGTCTC	1 cut(s)	232
BsmFI	GGGAC	4 cut(s)	221, 269, 336, 431
BsmI	GAATGC	1 cut(s)	200
BsnI	GGCC	2 cut(s)	443, 520
Bsp1286I	GDGCHC	4 cut(s)	75, 333, 363, 480
Bsp13I	TCCGGA	1 cut(s)	302
Bsp143I	GATC	2 cut(s)	481, 703
Bsp19I	CCATGG	1 cut(s)	346
BspACI	CCGC	9 cut(s)	68, 76, 95, 198, 287, 502, 606, 726, 732
BspANI	GGCC	2 cut(s)	443, 520
BspCNI	CTCAG	2 cut(s)	399, 451
BspEI	TCCGGA	1 cut(s)	302
BspLI	GGNNCC	3 cut(s)	324, 352, 519
BspMI	ACCTGC	1 cut(s)	457
BspPI	GGATC	2 cut(s)	476, 698
BspQI	GCTCTTC	2 cut(s)	338, 468
BsrFI	RCCGGY	1 cut(s)	64
BsrI	ACTGG	2 cut(s)	214, 254
BssAI	RCCGGY	1 cut(s)	64
BssECI	CCNNGG	2 cut(s)	326, 346
BssMI	GATC	2 cut(s)	481, 703
BssNI	GRCGYC	1 cut(s)	92
BssT1I	CCWWGG	1 cut(s)	346
Bst4CI	ACNGT	4 cut(s)	163, 358, 374, 673
Bst6I	CTCTTC	3 cut(s)	227, 338, 468
BstACI	GRCGYC	1 cut(s)	92
BstBAI	YACGTR	2 cut(s)	113, 451
BstDEI	CTNAG	3 cut(s)	386, 459, 561
BstDSI	CCRYGG	1 cut(s)	346
BstEII	GGTNACC	1 cut(s)	487
BstHHI	GCGC	2 cut(s)	281, 466
BstKTI	GATC	2 cut(s)	484, 706
BstMAI	GTCTC	2 cut(s)	232, 653
BstMBI	GATC	2 cut(s)	481, 703
BstMWI	GCNNNNNNNGC	2 cut(s)	508, 517
BstPI	GGTNACC	1 cut(s)	487
BstSCI	CCNGG	1 cut(s)	325
BstSLI	GKGCMC	2 cut(s)	75, 363
BstV1I	GCAGC	1 cut(s)	84
BstV2I	GAAGAC	1 cut(s)	461
Bsu36I	CCTNAGG	1 cut(s)	386
BsuRI	GGCC	2 cut(s)	443, 520
BtgI	CCRYGG	1 cut(s)	346
BtrI	CACGTC	1 cut(s)	178
BtsIMutI	CAGTG	2 cut(s)	261, 354
BveI	ACCTGC	1 cut(s)	457
CfoI	GCGC	2 cut(s)	281, 466
Cfr10I	RCCGGY	1 cut(s)	64
Cfr13I	GGNCC	2 cut(s)	323, 518
CseI	GACGC	1 cut(s)	100
Csp6I	GTAC	3 cut(s)	144, 310, 448
CviAII	CATG	2 cut(s)	347, 439
CviQI	GTAC	3 cut(s)	144, 310, 448
DdeI	CTNAG	3 cut(s)	386, 459, 561
DpnI	GATC	2 cut(s)	483, 705
DpnII	GATC	2 cut(s)	481, 703
EaeI	YGGCCR	1 cut(s)	441
Eam1104I	CTCTTC	3 cut(s)	227, 338, 468
EarI	CTCTTC	3 cut(s)	227, 338, 468
Eco130I	CCWWGG	1 cut(s)	346
Eco24I	GRGCYC	1 cut(s)	333
Eco47I	GGWCC	1 cut(s)	323
Eco57I	CTGAAG	1 cut(s)	319
Eco72I	CACGTG	1 cut(s)	113
Eco81I	CCTNAGG	1 cut(s)	386
Eco91I	GGTNACC	1 cut(s)	487
EcoO109I	RGGNCCY	1 cut(s)	518
EcoO65I	GGTNACC	1 cut(s)	487
EcoT14I	CCWWGG	1 cut(s)	346
EcoT38I	GRGCYC	1 cut(s)	333
ErhI	CCWWGG	1 cut(s)	346
Esp3I	CGTCTC	1 cut(s)	232
FaeI	CATG	2 cut(s)	350, 442
FaiI	YATR	3 cut(s)	348, 440, 645
FaqI	GGGAC	4 cut(s)	221, 269, 336, 431
FatI	CATG	2 cut(s)	346, 438
FauI	CCCGC	2 cut(s)	294, 599
FblI	GTMKAC	1 cut(s)	89
Fnu4HI	GCNGC	3 cut(s)	95, 98, 198
FriOI	GRGCYC	1 cut(s)	333
Fsp4HI	GCNGC	3 cut(s)	95, 98, 198
FspBI	CTAG	1 cut(s)	588
GlaI	GCGC	2 cut(s)	280, 465
GluI	GCNGC	3 cut(s)	95, 98, 198
GsaI	CCCAGC	1 cut(s)	604
HaeIII	GGCC	2 cut(s)	443, 520
HapII	CCGG	8 cut(s)	65, 290, 303, 326, 485, 492, 656, 707
HgaI	GACGC	1 cut(s)	100
HhaI	GCGC	2 cut(s)	281, 466
Hin1I	GRCGYC	1 cut(s)	92
Hin1II	CATG	2 cut(s)	350, 442
Hin6I	GCGC	2 cut(s)	279, 464
HinP1I	GCGC	2 cut(s)	279, 464
HincII	GTYRAC	1 cut(s)	90
HindII	GTYRAC	1 cut(s)	90
HinfI	GANTC	1 cut(s)	188
HpaII	CCGG	8 cut(s)	65, 290, 303, 326, 485, 492, 656, 707
HphI	GGTGA	3 cut(s)	436, 577, 727
Hpy166II	GTNNAC	4 cut(s)	73, 90, 361, 507
Hpy188I	TCNGA	3 cut(s)	153, 241, 266
Hpy188III	TCNNGA	2 cut(s)	303, 676
Hpy8I	GTNNAC	4 cut(s)	73, 90, 361, 507
Hpy99I	CGWCG	3 cut(s)	91, 94, 344
HpyAV	CCTTC	6 cut(s)	269, 309, 421, 529, 623, 673
HpyCH4III	ACNGT	4 cut(s)	163, 358, 374, 673
HpyCH4IV	ACGT	4 cut(s)	112, 177, 308, 450
HpyCH4V	TGCA	3 cut(s)	4, 73, 361
HpyF10VI	GCNNNNNNNGC	2 cut(s)	508, 517
HpyF3I	CTNAG	3 cut(s)	386, 459, 561
HpySE526I	ACGT	4 cut(s)	112, 177, 308, 450
Hsp92I	GRCGYC	1 cut(s)	92
Hsp92II	CATG	2 cut(s)	350, 442
HspAI	GCGC	2 cut(s)	279, 464
Kpn2I	TCCGGA	1 cut(s)	302
Kzo9I	GATC	2 cut(s)	481, 703
LguI	GCTCTTC	2 cut(s)	338, 468
LmnI	GCTCC	2 cut(s)	356, 494
Lsp1109I	GCAGC	1 cut(s)	84
MaeI	CTAG	1 cut(s)	588
MaeII	ACGT	4 cut(s)	112, 177, 308, 450
MaeIII	GTNAC	3 cut(s)	256, 374, 487
MalI	GATC	2 cut(s)	483, 705
MboI	GATC	2 cut(s)	481, 703
MboII	GAAGA	5 cut(s)	214, 325, 466, 485, 583
MhlI	GDGCHC	4 cut(s)	75, 333, 363, 480
MlsI	TGGCCA	1 cut(s)	443
MluNI	TGGCCA	1 cut(s)	443
MlyI	GAGTC	1 cut(s)	182
MmeI	TCCRAC	1 cut(s)	176
Mox20I	TGGCCA	1 cut(s)	443
MroI	TCCGGA	1 cut(s)	302
MscI	TGGCCA	1 cut(s)	443
MseI	TTAA	1 cut(s)	102
MslI	CAYNNNNRTG	1 cut(s)	563
Msp20I	TGGCCA	1 cut(s)	443
MspA1I	CMGCKG	1 cut(s)	97
MspI	CCGG	8 cut(s)	65, 290, 303, 326, 485, 492, 656, 707
MspR9I	CCNGG	1 cut(s)	327
Mva1269I	GAATGC	1 cut(s)	200
MwoI	GCNNNNNNNGC	2 cut(s)	508, 517
NciI	CCSGG	1 cut(s)	327
NcoI	CCATGG	1 cut(s)	346
NdeII	GATC	2 cut(s)	481, 703
NlaIII	CATG	2 cut(s)	350, 442
NlaIV	GGNNCC	3 cut(s)	324, 352, 519
NmuCI	GTSAC	2 cut(s)	256, 374
OliI	CACNNNNGTG	1 cut(s)	563
PaqCI	CACCTGC	1 cut(s)	457
PciSI	GCTCTTC	2 cut(s)	338, 468
PcsI	WCGNNNNNNNCGW	1 cut(s)	189
PctI	GAATGC	1 cut(s)	200
PflFI	GACNNNGTC	1 cut(s)	179
PkrI	GCNGC	3 cut(s)	96, 99, 199
PleI	GAGTC	1 cut(s)	182
PmaCI	CACGTG	1 cut(s)	113
PmlI	CACGTG	1 cut(s)	113
PpsI	GAGTC	1 cut(s)	182
Ppu21I	YACGTR	2 cut(s)	113, 451
PspCI	CACGTG	1 cut(s)	113
PspEI	GGTNACC	1 cut(s)	487
PspFI	CCCAGC	1 cut(s)	600
PspN4I	GGNNCC	3 cut(s)	324, 352, 519
PspPI	GGNCC	2 cut(s)	323, 518
PsyI	GACNNNGTC	1 cut(s)	179
RsaI	GTAC	3 cut(s)	145, 311, 449
RsaNI	GTAC	3 cut(s)	144, 310, 448
RseI	CAYNNNNRTG	1 cut(s)	563
SalI	GTCGAC	1 cut(s)	88
SapI	GCTCTTC	2 cut(s)	338, 468
SaqAI	TTAA	1 cut(s)	102
SatI	GCNGC	3 cut(s)	95, 98, 198
Sau3AI	GATC	2 cut(s)	481, 703
Sau96I	GGNCC	2 cut(s)	323, 518
ScaI	AGTACT	1 cut(s)	145
SchI	GAGTC	1 cut(s)	182
ScrFI	CCNGG	1 cut(s)	327
SduI	GDGCHC	4 cut(s)	75, 333, 363, 480
SgrDI	CGTCGACG	1 cut(s)	88
SinI	GGWCC	1 cut(s)	323
SmiMI	CAYNNNNRTG	1 cut(s)	563
SpeI	ACTAGT	1 cut(s)	587
SsiI	CCGC	9 cut(s)	68, 76, 95, 198, 287, 502, 606, 726, 732
SspI	AATATT	1 cut(s)	42
SspMI	CTAG	1 cut(s)	588
StyD4I	CCNGG	1 cut(s)	325
StyI	CCWWGG	1 cut(s)	346
TaaI	ACNGT	4 cut(s)	163, 358, 374, 673
TaiI	ACGT	4 cut(s)	115, 180, 311, 453
TaqI	TCGA	4 cut(s)	89, 167, 183, 402
TatI	WGTACW	1 cut(s)	143
TauI	GCSGC	2 cut(s)	97, 200
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TscAI	CASTG	2 cut(s)	261, 361
TseFI	GTSAC	2 cut(s)	256, 374
TseI	GCWGC	1 cut(s)	97
Tsp45I	GTSAC	2 cut(s)	256, 374
TspDTI	ATGAA	2 cut(s)	427, 584
TspGWI	ACGGA	3 cut(s)	75, 153, 181
TspRI	CASTG	2 cut(s)	261, 361
Tth111I	GACNNNGTC	1 cut(s)	179
VneI	GTGCAC	2 cut(s)	71, 359
VpaK11BI	GGWCC	1 cut(s)	323
XmiI	GTMKAC	1 cut(s)	89
XspI	CTAG	1 cut(s)	588
ZrmI	AGTACT	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.