Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001225

Physical Location & Seq

Genomic Coordinates Forward (+)

40434258 .. 40448288

Gene Structure 14031 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG206600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1836 bp

ATGCAAGCCAGCCCCTTCCAAGTCATTCCCAAACCAATATTTCCCTCACCGATAAACATACCTCCGGTGCACCGACGTCCTCCCTCGCAACGAGTTCGTGCCATCACTACTTCCACAGCCAATGAAACCCATAGTTCTACTCCAATTACCATGTCAACTCTAGAAGTGGTCGATGCCTCCGTGGCCGCATTCTGGGACTACCAGTTCCTCTTCGTCTCGCAACGCTCGGAAACAAACGAGCCCGTGACTCTACAAGTCGTCGAAGGTGCGGTCCCGACGGAGTTTCCTTCCGGAACATACTACTTGGCGGGACCGGGGATCTTCAGGGATGACCACGGTTCGACAATGCACCCTTTCGACGGCCACGGCTACCTCAGGGCTTTTACTTTCGATGGGGTTAATGGGGATAAGTTCAGTGTCAAGTTCATGGCGAGGTACGTGAATACTGAGGCAAAGGTGGAAGAGCACGACCCGGTGACCAACACGTGGCGGTTCCGACATAGGGGATTGTTCTCGATGCTGAAGAGAGGAGAGAAAGTTTGGAACACCAAGGTGATGAAAAACGTGGCGAATACTAGTGTGTTGAGCTGGGGTGGGAGGCTGTTGTGCTTGTGGGAAGGCGGGGAACCATACGAAATTGAACCGGAGAGGTTGGATACGATCGGGAAGGTCAAGCTGATGGATGGTTGGGATTCAGTGGTGGAGAGGAGAAGCGATGGTGGTGATGTATGGGATGTTGCAGCAAGGTTGCTGAAGCCGATTTTGTACGGAGTGTTTAAGATGCCAGTGAAGCGATTATTAGCTCATTATAAGTTCGATGCTTGCAGAAATAGACTTCTTTTAATGTCATGTAATGCAGAAGATATTTTTTTACCACGCAACAATTTTACATTCTATGAATTTGATTCAAATTTTAAGGTGGTTGGAAAGAAAGAATTCATCATCCCTGATCACTTGATGATTCATGATTGGGCTTTCACAGCCACTAGTTATATACTATTTGCTAATCGTGTCAAGCTTGACGTTACCGGTGCAATGACTTCATTTTGTGGAATTACTCCAACAATTGCAGCATTATCAGTGAACCCTAGCAAGGAAACTTCTCCCATATATGTGCTTCCTCGGTTTCCTAATGAAGTGAATTATAATCGAGATTGGAGAGTGCCTGTTGAAGCTCCTTCACAATTTTGGCTGCTACATGTAGGCAATGCCTATGAGAGTATGGATGAAAATGGGAATTCGGAGATTCAAATACAAGCTTCTGTTTGCTCTTACGAGTGGTTCACATTACATAAATTACTTGGATATGATTGGCAAAGTGGTAAACTGGACCCTTCGATTATGTACTTAAATGGAAACAAAAGCAAGAAAATGCCTCACCTTGTCCAGGTTTCCATCAACTTGGATACCGATGGGATCTATCAAAGATGTGATATTGAGCCATTAAACCAGTGGATCAAGTCATCAGATTTTCCCGTCATAAATCCAGCATTTTCGGGCAGCAAGAATAAGTACATATATGCAGCAGCCTTTTCAGGTTCTCGCAGGGCATTGCCAAACTTTCCATATGACATGGTGGTGAAGCTCAATCTTTCAACTAAATCTGTACGCACATGGTCTGCTGATAGTCGAAGATTTATCGGCGAACCCACTTTCATAGCCAAAGGTTCCGAAGAAGATGAGGGTTACATTCTTGTAGTTGAGGCTTTGGTATTGTGGCTAATTGAGTCAGTCAGTGAGAAGATTGGCTTTTCTAGTAAGGAGGTTTCTGGTTCAGTCGCCATTGCAGACACAATCATCTTGGAATTGGGAACGCAGAAAGAGCATCCTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001763 GO:0003674 GO:0003824 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008300 GO:0008610 GO:0009056 GO:0009058 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010016 GO:0010033 GO:0010223 GO:0010346 GO:0010436 GO:0010817 GO:0016042 GO:0016106 GO:0016114 GO:0016119 GO:0016121 GO:0016491 GO:0016701 GO:0016702 GO:0018130 GO:0032501 GO:0032502 GO:0042214 GO:0042221 GO:0042445 GO:0042446 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0045549 GO:0046247 GO:0046483 GO:0048367 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051213 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901334 GO:1901336 GO:1901360 GO:1901362 GO:1901575 GO:1901576 GO:1901600 GO:1901601 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00906 map00906

Pfam Domains

Protein Families

RPE65

Protein Analysis

611

Amino Acids

69.1

Weight (kDa)

6.3

Isoelectric Point (pI)

44.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPE65	PF03055	72 - 567	2.9e-77	Retinal pigment epithelial membrane protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44990 AT2G44990 AT2G44990
fragaria_vesca	FvH4_7g10450
malus_domestica	MD07G1110600.v1.1
prunus_persica	Prupe.2G133900_v2.0.a1
pyrus_communis	pycom07g09530
rosa_chinensis	RchiOBHm_Chr1g0342921 RchiOBHm_Chr1g0342931 RchiOBHm_Chr1g0348141 RchiOBHm_Chr1g0348171 RchiOBHm_Chr1g0348201 RchiOBHm_Chr2g0136091 RchiOBHm_Chr7g0229961
rosa_laevigata	RLG00000028678 RLG00000028682 RLG00000028684 RLG00000028685 RLG00000028686
rosa_multiflora	Rmu_co8414565.1_g000001 Rmu_co8499605.1_g000001 Rmu_sc0001563.1_g000031 Rmu_sc0001890.1_g000013 Rmu_sc0001890.1_g000015 Rmu_sc0002209.1_g000017 Rmu_sc0003991.1_g000009 Rmu_sc0004502.1_g000011 Rmu_sc0004502.1_g000018 Rmu_sc0005046.1_g000018
rosa_roxburghii	Rroxscaffold_4G00307110 Rroxscaffold_4G00307160 Rroxscaffold_4G00307170 Rroxscaffold_4G00307180
rosa_rugosa	Rorug01G0145700.1 Rorug01G0192700 Rorug01G0192900 Rorug01G0193500
rosa_samantha	Rh1AG095900 Rh1AG210700 Rh1AG210800 Rh1BG176200 Rh1BG176800 Rh1BG177100 Rh1BG177200 Rh1CG195000 Rh1CG195100 Rh1DG205900 Rh1DG206300 Rh1DG206600 Rh1DG206700 Rh3DG305500
rosa_wichuraiana	Rw0G011410 Rw1G017570 Rw1G017580 Rw1G017590 Rw1G017800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	810, 1146
AatII	GACGTC	1 cut(s)	79
AccB7I	CCANNNNNTGG	1 cut(s)	486
AccIII	TCCGGA	1 cut(s)	290
AciI	CCGC	5 cut(s)	186, 269, 308, 490, 621
AclWI	GGATC	3 cut(s)	326, 1424, 1463
AcoI	YGGCCR	2 cut(s)	183, 361
AcsI	RAATTY	4 cut(s)	899, 910, 935, 1237
AcuI	CTGAAG	3 cut(s)	307, 542, 773
AcvI	CACGTG	1 cut(s)	486
AcyI	GRCGYC	1 cut(s)	76
AfaI	GTAC	5 cut(s)	437, 767, 1346, 1514, 1608
AfiI	CCNNNNNNNGG	6 cut(s)	192, 359, 486, 502, 1093, 1387
AflIII	ACRYGT	2 cut(s)	483, 1198
AgeI	ACCGGT	1 cut(s)	1028
AgsI	TTSAA	5 cut(s)	641, 909, 1172, 1250, 1596
AhlI	ACTAGT	2 cut(s)	575, 986
AjnI	CCWGG	1 cut(s)	1386
AleI	CACNNNNGTG	1 cut(s)	551
AloI	GAACNNNNNNTCC	2 cut(s)	188, 220
AluBI	AGCT	7 cut(s)	588, 676, 803, 1018, 1175, 1259, 1585
AluI	AGCT	7 cut(s)	588, 676, 803, 1018, 1175, 1259, 1585
Alw21I	GWGCWC	2 cut(s)	72, 468
Alw26I	GTCTC	1 cut(s)	220
Alw44I	GTGCAC	1 cut(s)	68
AlwI	GGATC	3 cut(s)	326, 1424, 1463
Aor13HI	TCCGGA	1 cut(s)	290
AoxI	GGCC	2 cut(s)	183, 361
ApaLI	GTGCAC	1 cut(s)	68
ApeKI	GCWGC	6 cut(s)	740, 1070, 1192, 1500, 1523, 1526
ApoI	RAATTY	4 cut(s)	899, 910, 935, 1237
ArsI	GACNNNNNNTTYG	2 cut(s)	255, 287
AsiGI	ACCGGT	1 cut(s)	1028
Asp700I	GAANNNNTTC	1 cut(s)	935
AspS9I	GGNCC	3 cut(s)	271, 311, 1330
AsuC2I	CCSGG	2 cut(s)	315, 473
AsuHPI	GGTGA	6 cut(s)	39, 487, 565, 734, 1370, 1591
AvaII	GGWCC	3 cut(s)	271, 311, 1330
AxyI	CCTNAGG	1 cut(s)	374
BaeGI	GKGCMC	1 cut(s)	72
BanII	GRGCYC	1 cut(s)	243
BbrPI	CACGTG	1 cut(s)	486
Bbv12I	GWGCWC	2 cut(s)	72, 468
BbvI	GCAGC	6 cut(s)	752, 1082, 1179, 1512, 1535, 1538
BccI	CCATC	7 cut(s)	110, 386, 673, 677, 710, 1403, 1406
BceAI	ACGGC	2 cut(s)	376, 382
BcgI	CGANNNNNNTGC	2 cut(s)	77, 111
BciT130I	CCWGG	1 cut(s)	1388
BciVI	GTATCC	2 cut(s)	649, 1399
BclI	TGATCA	1 cut(s)	949
BcnI	CCSGG	2 cut(s)	315, 473
BcoDI	GTCTC	1 cut(s)	220
BcuI	ACTAGT	2 cut(s)	575, 986
BfaI	CTAG	5 cut(s)	161, 576, 987, 1089, 1755
BfuI	GTATCC	2 cut(s)	649, 1399
BglI	GCCNNNNNGGC	1 cut(s)	182
BisI	GCNGC	7 cut(s)	186, 741, 1071, 1193, 1501, 1524, 1527
BlsI	GCNGC	7 cut(s)	187, 742, 1072, 1194, 1502, 1525, 1528
Bme1390I	CCNGG	3 cut(s)	315, 473, 1388
Bme18I	GGWCC	3 cut(s)	271, 311, 1330
BmgT120I	GGNCC	3 cut(s)	271, 311, 1330
BmiI	GGNNCC	6 cut(s)	273, 312, 494, 627, 1332, 1669
BmrFI	CCNGG	3 cut(s)	315, 473, 1388
BmsI	GCATC	4 cut(s)	163, 507, 771, 808
BpuMI	CCSGG	2 cut(s)	315, 473
BsaAI	YACGTR	2 cut(s)	439, 486
BsaHI	GRCGYC	1 cut(s)	76
BsaJI	CCNNGG	6 cut(s)	180, 314, 334, 364, 549, 1121
BsaWI	WCCGGW	4 cut(s)	64, 290, 643, 1028
BsaXI	ACNNNNNCTCC	2 cut(s)	522, 552
Bsc4I	CCNNNNNNNGG	6 cut(s)	192, 359, 486, 502, 1093, 1387
Bse118I	RCCGGY	1 cut(s)	1028
Bse1I	ACTGG	4 cut(s)	202, 785, 1332, 1450
Bse21I	CCTNAGG	1 cut(s)	374
Bse3DI	GCAATG	4 cut(s)	1041, 1213, 1550, 1782
BseAI	TCCGGA	1 cut(s)	290
BseBI	CCWGG	1 cut(s)	1388
BseDI	CCNNGG	6 cut(s)	180, 314, 334, 364, 549, 1121
BseGI	GGATG	6 cut(s)	334, 688, 739, 942, 1231, 1825
BseLI	CCNNNNNNNGG	6 cut(s)	192, 359, 486, 502, 1093, 1387
BseMI	GCAATG	4 cut(s)	1041, 1213, 1550, 1782
BseMII	CTCAG	2 cut(s)	388, 438
BseNI	ACTGG	4 cut(s)	202, 785, 1332, 1450
BseRI	GAGGAG	2 cut(s)	543, 721
BseSI	GKGCMC	1 cut(s)	72
BseXI	GCAGC	6 cut(s)	752, 1082, 1179, 1512, 1535, 1538
BseYI	CCCAGC	1 cut(s)	588
Bsh1285I	CGRYCG	1 cut(s)	663
BshFI	GGCC	2 cut(s)	185, 363
BshTI	ACCGGT	1 cut(s)	1028
BsiEI	CGRYCG	1 cut(s)	663
BsiHKAI	GWGCWC	2 cut(s)	72, 468
BsiSI	CCGG	6 cut(s)	65, 291, 314, 473, 644, 1029
BslFI	GGGAC	3 cut(s)	209, 257, 324
BslI	CCNNNNNNNGG	6 cut(s)	192, 359, 486, 502, 1093, 1387
BsmAI	GTCTC	1 cut(s)	220
BsmBI	CGTCTC	1 cut(s)	220
BsmFI	GGGAC	3 cut(s)	209, 257, 324
BsmI	GAATGC	1 cut(s)	188
BsnI	GGCC	2 cut(s)	185, 363
Bsp1286I	GDGCHC	3 cut(s)	72, 243, 468
Bsp13I	TCCGGA	1 cut(s)	290
Bsp143I	GATC	5 cut(s)	318, 660, 949, 1416, 1455
BspACI	CCGC	5 cut(s)	186, 269, 308, 490, 621
BspANI	GGCC	2 cut(s)	185, 363
BspCNI	CTCAG	2 cut(s)	387, 439
BspEI	TCCGGA	1 cut(s)	290
BspHI	TCATGA	1 cut(s)	964
BspLI	GGNNCC	6 cut(s)	273, 312, 494, 627, 1332, 1669
BspPI	GGATC	3 cut(s)	326, 1424, 1463
BspQI	GCTCTTC	1 cut(s)	456
BsrDI	GCAATG	4 cut(s)	1041, 1213, 1550, 1782
BsrFI	RCCGGY	1 cut(s)	1028
BsrI	ACTGG	4 cut(s)	202, 785, 1332, 1450
BssAI	RCCGGY	1 cut(s)	1028
BssECI	CCNNGG	6 cut(s)	180, 314, 334, 364, 549, 1121
BssMI	GATC	5 cut(s)	318, 660, 949, 1416, 1455
BssNI	GRCGYC	1 cut(s)	76
BssT1I	CCWWGG	1 cut(s)	549
Bst2UI	CCWGG	1 cut(s)	1388
Bst4CI	ACNGT	1 cut(s)	338
Bst6I	CTCTTC	3 cut(s)	215, 456, 518
BstACI	GRCGYC	1 cut(s)	76
BstBAI	YACGTR	2 cut(s)	439, 486
BstC8I	GCNNGC	3 cut(s)	6, 10, 823
BstDEI	CTNAG	2 cut(s)	374, 447
BstDSI	CCRYGG	3 cut(s)	180, 334, 364
BstEII	GGTNACC	1 cut(s)	475
BstENI	CCTNNNNNAGG	1 cut(s)	1385
BstF5I	GGATG	6 cut(s)	334, 688, 739, 942, 1231, 1825
BstKTI	GATC	5 cut(s)	321, 663, 952, 1419, 1458
BstMAI	GTCTC	1 cut(s)	220
BstMBI	GATC	5 cut(s)	318, 660, 949, 1416, 1455
BstMCI	CGRYCG	1 cut(s)	663
BstMWI	GCNNNNNNNGC	4 cut(s)	182, 790, 980, 1822
BstNI	CCWGG	1 cut(s)	1388
BstNSI	RCATGY	1 cut(s)	1202
BstPI	GGTNACC	1 cut(s)	475
BstSCI	CCNGG	3 cut(s)	313, 471, 1386
BstSLI	GKGCMC	1 cut(s)	72
BstV1I	GCAGC	6 cut(s)	752, 1082, 1179, 1512, 1535, 1538
BstX2I	RGATCY	2 cut(s)	318, 1416
BstXI	CCANNNNNNTGG	1 cut(s)	1402
BstYI	RGATCY	2 cut(s)	318, 1416
Bsu36I	CCTNAGG	1 cut(s)	374
BsuI	GTATCC	2 cut(s)	649, 1399
BsuRI	GGCC	2 cut(s)	185, 363
BtgI	CCRYGG	3 cut(s)	180, 334, 364
BtgZI	GCGATG	1 cut(s)	729
BtsCI	GGATG	6 cut(s)	334, 688, 739, 942, 1231, 1825
BtsIMutI	CAGTG	6 cut(s)	421, 702, 792, 1086, 1457, 1741
Cac8I	GCNNGC	3 cut(s)	6, 10, 823
CciI	TCATGA	1 cut(s)	964
Cfr10I	RCCGGY	1 cut(s)	1028
Cfr13I	GGNCC	3 cut(s)	271, 311, 1330
Csp6I	GTAC	5 cut(s)	436, 766, 1345, 1513, 1607
CspAI	ACCGGT	1 cut(s)	1028
CviAII	CATG	7 cut(s)	151, 427, 849, 965, 1199, 1573, 1614
CviQI	GTAC	5 cut(s)	436, 766, 1345, 1513, 1607
DdeI	CTNAG	2 cut(s)	374, 447
DpnI	GATC	5 cut(s)	320, 662, 951, 1418, 1457
DpnII	GATC	5 cut(s)	318, 660, 949, 1416, 1455
EaeI	YGGCCR	2 cut(s)	183, 361
Eam1104I	CTCTTC	3 cut(s)	215, 456, 518
EarI	CTCTTC	3 cut(s)	215, 456, 518
Eco130I	CCWWGG	1 cut(s)	549
Eco24I	GRGCYC	1 cut(s)	243
Eco47I	GGWCC	3 cut(s)	271, 311, 1330
Eco57I	CTGAAG	3 cut(s)	307, 542, 773
Eco72I	CACGTG	1 cut(s)	486
Eco81I	CCTNAGG	1 cut(s)	374
Eco91I	GGTNACC	1 cut(s)	475
EcoNI	CCTNNNNNAGG	1 cut(s)	1385
EcoO65I	GGTNACC	1 cut(s)	475
EcoRI	GAATTC	2 cut(s)	935, 1237
EcoRII	CCWGG	1 cut(s)	1386
EcoT14I	CCWWGG	1 cut(s)	549
EcoT38I	GRGCYC	1 cut(s)	243
ErhI	CCWWGG	1 cut(s)	549
Esp3I	CGTCTC	1 cut(s)	220
FaeI	CATG	7 cut(s)	154, 430, 852, 968, 1202, 1576, 1617
FalI	AAGNNNNNCTT	2 cut(s)	1733, 1765
FaqI	GGGAC	3 cut(s)	209, 257, 324
FatI	CATG	7 cut(s)	150, 426, 848, 964, 1198, 1572, 1613
FauI	CCCGC	2 cut(s)	301, 614
FauNDI	CATATG	1 cut(s)	1567
FbaI	TGATCA	1 cut(s)	949
Fnu4HI	GCNGC	7 cut(s)	186, 741, 1071, 1193, 1501, 1524, 1527
FokI	GGATG	6 cut(s)	341, 695, 746, 929, 1238, 1812
FriOI	GRGCYC	1 cut(s)	243
Fsp4HI	GCNGC	7 cut(s)	186, 741, 1071, 1193, 1501, 1524, 1527
FspBI	CTAG	5 cut(s)	161, 576, 987, 1089, 1755
GluI	GCNGC	7 cut(s)	186, 741, 1071, 1193, 1501, 1524, 1527
GsaI	CCCAGC	1 cut(s)	592
HaeIII	GGCC	2 cut(s)	185, 363
HapII	CCGG	6 cut(s)	65, 291, 314, 473, 644, 1029
Hin1I	GRCGYC	1 cut(s)	76
Hin1II	CATG	7 cut(s)	154, 430, 852, 968, 1202, 1576, 1617
HincII	GTYRAC	1 cut(s)	156
HindII	GTYRAC	1 cut(s)	156
HindIII	AAGCTT	2 cut(s)	1016, 1257
HinfI	GANTC	6 cut(s)	247, 692, 905, 961, 1246, 1727
HpaII	CCGG	6 cut(s)	65, 291, 314, 473, 644, 1029
HphI	GGTGA	6 cut(s)	39, 487, 565, 734, 1370, 1591
Hpy166II	GTNNAC	5 cut(s)	70, 156, 1084, 1284, 1325
Hpy188I	TCNGA	5 cut(s)	229, 497, 1243, 1468, 1672
Hpy188III	TCNNGA	7 cut(s)	161, 274, 291, 514, 664, 965, 1151
Hpy8I	GTNNAC	5 cut(s)	70, 156, 1084, 1284, 1325
Hpy99I	CGWCG	4 cut(s)	78, 263, 280, 362
HpyAV	CCTTC	7 cut(s)	25, 257, 297, 611, 661, 1188, 1344
HpyCH4III	ACNGT	1 cut(s)	338
HpyCH4IV	ACGT	5 cut(s)	76, 438, 485, 564, 1023
HpyF10VI	GCNNNNNNNGC	4 cut(s)	182, 790, 980, 1822
HpyF3I	CTNAG	2 cut(s)	374, 447
HpySE526I	ACGT	5 cut(s)	76, 438, 485, 564, 1023
Hsp92I	GRCGYC	1 cut(s)	76
Hsp92II	CATG	7 cut(s)	154, 430, 852, 968, 1202, 1576, 1617
Kpn2I	TCCGGA	1 cut(s)	290
Ksp22I	TGATCA	1 cut(s)	949
Kzo9I	GATC	5 cut(s)	318, 660, 949, 1416, 1455
LguI	GCTCTTC	1 cut(s)	456
LmnI	GCTCC	1 cut(s)	1180
Lsp1109I	GCAGC	6 cut(s)	752, 1082, 1179, 1512, 1535, 1538
LweI	GCATC	4 cut(s)	163, 507, 771, 808
MaeI	CTAG	5 cut(s)	161, 576, 987, 1089, 1755
MaeII	ACGT	5 cut(s)	76, 438, 485, 564, 1023
MaeIII	GTNAC	4 cut(s)	244, 475, 1024, 1685
MalI	GATC	5 cut(s)	320, 662, 951, 1418, 1457
MboI	GATC	5 cut(s)	318, 660, 949, 1416, 1455
MboII	GAAGA	9 cut(s)	202, 313, 473, 535, 872, 1644, 1685, 1688, 1753
MfeI	CAATTG	1 cut(s)	1065
MflI	RGATCY	2 cut(s)	318, 1416
MhlI	GDGCHC	3 cut(s)	72, 243, 468
MlyI	GAGTC	2 cut(s)	241, 1736
MmeI	TCCRAC	4 cut(s)	520, 633, 904, 1085
MroI	TCCGGA	1 cut(s)	290
MroXI	GAANNNNTTC	1 cut(s)	935
MseI	TTAA	6 cut(s)	399, 777, 842, 915, 1349, 1445
MslI	CAYNNNNRTG	3 cut(s)	551, 1112, 1577
MspI	CCGG	6 cut(s)	65, 291, 314, 473, 644, 1029
MspR9I	CCNGG	3 cut(s)	315, 473, 1388
MunI	CAATTG	1 cut(s)	1065
Mva1269I	GAATGC	1 cut(s)	188
MvaI	CCWGG	1 cut(s)	1388
MwoI	GCNNNNNNNGC	4 cut(s)	182, 790, 980, 1822
NciI	CCSGG	2 cut(s)	315, 473
NdeI	CATATG	1 cut(s)	1567
NdeII	GATC	5 cut(s)	318, 660, 949, 1416, 1455
NlaIII	CATG	7 cut(s)	154, 430, 852, 968, 1202, 1576, 1617
NlaIV	GGNNCC	6 cut(s)	273, 312, 494, 627, 1332, 1669
NmuCI	GTSAC	2 cut(s)	244, 475
NspI	RCATGY	1 cut(s)	1202
OliI	CACNNNNGTG	1 cut(s)	551
PagI	TCATGA	1 cut(s)	964
PciI	ACATGT	1 cut(s)	1198
PciSI	GCTCTTC	1 cut(s)	456
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PctI	GAATGC	1 cut(s)	188
PdmI	GAANNNNTTC	1 cut(s)	935
PfeI	GAWTC	4 cut(s)	692, 905, 961, 1246
PflMI	CCANNNNNTGG	1 cut(s)	486
PinAI	ACCGGT	1 cut(s)	1028
PkrI	GCNGC	7 cut(s)	187, 742, 1072, 1194, 1502, 1525, 1528
Ple19I	CGATCG	1 cut(s)	663
PleI	GAGTC	2 cut(s)	241, 1735
PmaCI	CACGTG	1 cut(s)	486
PmlI	CACGTG	1 cut(s)	486
PpsI	GAGTC	2 cut(s)	241, 1735
Ppu21I	YACGTR	2 cut(s)	439, 486
PscI	ACATGT	1 cut(s)	1198
PsiI	TTATAA	2 cut(s)	810, 1146
Psp6I	CCWGG	1 cut(s)	1386
PspCI	CACGTG	1 cut(s)	486
PspEI	GGTNACC	1 cut(s)	475
PspFI	CCCAGC	1 cut(s)	588
PspGI	CCWGG	1 cut(s)	1386
PspN4I	GGNNCC	6 cut(s)	273, 312, 494, 627, 1332, 1669
PspPI	GGNCC	3 cut(s)	271, 311, 1330
PsuI	RGATCY	2 cut(s)	318, 1416
PvuI	CGATCG	1 cut(s)	663
RsaI	GTAC	5 cut(s)	437, 767, 1346, 1514, 1608
RsaNI	GTAC	5 cut(s)	436, 766, 1345, 1513, 1607
RseI	CAYNNNNRTG	3 cut(s)	551, 1112, 1577
SapI	GCTCTTC	1 cut(s)	456
SaqAI	TTAA	6 cut(s)	399, 777, 842, 915, 1349, 1445
SatI	GCNGC	7 cut(s)	186, 741, 1071, 1193, 1501, 1524, 1527
Sau3AI	GATC	5 cut(s)	318, 660, 949, 1416, 1455
Sau96I	GGNCC	3 cut(s)	271, 311, 1330
SchI	GAGTC	2 cut(s)	241, 1736
ScrFI	CCNGG	3 cut(s)	315, 473, 1388
SduI	GDGCHC	3 cut(s)	72, 243, 468
SfaNI	GCATC	4 cut(s)	163, 507, 771, 808
SinI	GGWCC	3 cut(s)	271, 311, 1330
SmiMI	CAYNNNNRTG	3 cut(s)	551, 1112, 1577
SpeI	ACTAGT	2 cut(s)	575, 986
SsiI	CCGC	5 cut(s)	186, 269, 308, 490, 621
SspI	AATATT	1 cut(s)	39
SspMI	CTAG	5 cut(s)	161, 576, 987, 1089, 1755
StyD4I	CCNGG	3 cut(s)	313, 471, 1386
StyI	CCWWGG	1 cut(s)	549
TaaI	ACNGT	1 cut(s)	338
TaiI	ACGT	5 cut(s)	79, 441, 488, 567, 1026
TatI	WGTACW	2 cut(s)	1344, 1512
TauI	GCSGC	1 cut(s)	188
TfiI	GAWTC	4 cut(s)	692, 905, 961, 1246
Tru1I	TTAA	6 cut(s)	399, 777, 842, 915, 1349, 1445
Tru9I	TTAA	6 cut(s)	399, 777, 842, 915, 1349, 1445
TscAI	CASTG	6 cut(s)	421, 702, 792, 1086, 1457, 1741
TseFI	GTSAC	2 cut(s)	244, 475
TseI	GCWGC	6 cut(s)	740, 1070, 1192, 1500, 1523, 1526
Tsp45I	GTSAC	2 cut(s)	244, 475
TspGWI	ACGGA	3 cut(s)	169, 293, 783
TspRI	CASTG	6 cut(s)	421, 702, 792, 1086, 1457, 1741
Van91I	CCANNNNNTGG	1 cut(s)	486
VneI	GTGCAC	1 cut(s)	68
VpaK11BI	GGWCC	3 cut(s)	271, 311, 1330
XagI	CCTNNNNNAGG	1 cut(s)	1385
XapI	RAATTY	4 cut(s)	899, 910, 935, 1237
XbaI	TCTAGA	1 cut(s)	160
XceI	RCATGY	1 cut(s)	1202
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1449
XmnI	GAANNNNTTC	1 cut(s)	935
XspI	CTAG	5 cut(s)	161, 576, 987, 1089, 1755
ZraI	GACGTC	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.