Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001225

Physical Location & Seq

Genomic Coordinates Forward (+)

26746132 .. 26746524

Gene Structure 393 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0192700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGAAATACTTGAAATACCCAACTGATTGGCTGGAAGAAACCCGTGGCATGCTTATTGTTGTGGCCGGCATGATTGCAACGATGACTTTCCAAGCTGCAGTTAATCCACCTGGCGATGTTAGGCAAAAAGATAATACGAATTCTGGTAATATTTATGGAAGTCCTTCCTTAACCGAGTCAGAGATATGTTACGCTGAAAGTGCAGTTTTAGCCTGTGGAGTGAGCGATGCATTTGATTACTTCCTCTTATTCATGAATTTCAATACCATCTCTTTCCTTGCTTCTTTGAGTGTTACGATCTTTTACTTATTAGCGGCTTTCCTCTCCATAACCGACTTTGTATGTGGCTCTTATCAATGGGTATGTGAATCGTTCTGTCTTGCCTGGCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001763 GO:0003674 GO:0003824 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008300 GO:0008610 GO:0009056 GO:0009058 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010016 GO:0010033 GO:0010223 GO:0010346 GO:0010436 GO:0010817 GO:0016042 GO:0016106 GO:0016114 GO:0016119 GO:0016121 GO:0016491 GO:0016701 GO:0016702 GO:0018130 GO:0032501 GO:0032502 GO:0042214 GO:0042221 GO:0042445 GO:0042446 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0045549 GO:0046247 GO:0046483 GO:0048367 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051213 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901334 GO:1901336 GO:1901360 GO:1901362 GO:1901575 GO:1901576 GO:1901600 GO:1901601 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00906 map00906

Pfam Domains

Protein Families

RPE65

Protein Analysis

130

Amino Acids

14.48

Weight (kDa)

4.27

Isoelectric Point (pI)

38.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PGG	PF13962	9 - 107	3.9e-12	Domain of unknown function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44990 AT2G44990 AT2G44990
fragaria_vesca	FvH4_7g10450
malus_domestica	MD07G1110600.v1.1
prunus_persica	Prupe.2G133900_v2.0.a1
pyrus_communis	pycom07g09530
rosa_chinensis	RchiOBHm_Chr1g0342921 RchiOBHm_Chr1g0342931 RchiOBHm_Chr1g0348141 RchiOBHm_Chr1g0348171 RchiOBHm_Chr1g0348201 RchiOBHm_Chr2g0136091 RchiOBHm_Chr7g0229961
rosa_laevigata	RLG00000028678 RLG00000028682 RLG00000028684 RLG00000028685 RLG00000028686
rosa_multiflora	Rmu_co8414565.1_g000001 Rmu_co8499605.1_g000001 Rmu_sc0001563.1_g000031 Rmu_sc0001890.1_g000013 Rmu_sc0001890.1_g000015 Rmu_sc0002209.1_g000017 Rmu_sc0003991.1_g000009 Rmu_sc0004502.1_g000011 Rmu_sc0004502.1_g000018 Rmu_sc0005046.1_g000018
rosa_roxburghii	Rroxscaffold_4G00307110 Rroxscaffold_4G00307160 Rroxscaffold_4G00307170 Rroxscaffold_4G00307180
rosa_rugosa	Rorug01G0145700.1 Rorug01G0192700 Rorug01G0192900 Rorug01G0193500
rosa_samantha	Rh1AG095900 Rh1AG210700 Rh1AG210800 Rh1BG176200 Rh1BG176800 Rh1BG177100 Rh1BG177200 Rh1CG195000 Rh1CG195100 Rh1DG205900 Rh1DG206300 Rh1DG206600 Rh1DG206700 Rh3DG305500
rosa_wichuraiana	Rw0G011410 Rw1G017570 Rw1G017580 Rw1G017590 Rw1G017800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	314
AcoI	YGGCCR	1 cut(s)	63
AcsI	RAATTY	2 cut(s)	139, 256
AgsI	TTSAA	2 cut(s)	13, 262
AjnI	CCWGG	2 cut(s)	109, 383
AluBI	AGCT	1 cut(s)	95
AluI	AGCT	1 cut(s)	95
AoxI	GGCC	1 cut(s)	63
ApeKI	GCWGC	1 cut(s)	95
ApoI	RAATTY	2 cut(s)	139, 256
Asp700I	GAANNNNTTC	1 cut(s)	163
BbvI	GCAGC	1 cut(s)	82
BccI	CCATC	1 cut(s)	275
BciT130I	CCWGG	2 cut(s)	111, 385
BfmI	CTRYAG	1 cut(s)	96
BisI	GCNGC	2 cut(s)	96, 315
BlsI	GCNGC	2 cut(s)	97, 316
Bme1390I	CCNGG	2 cut(s)	111, 385
BmrFI	CCNGG	2 cut(s)	111, 385
BmsI	GCATC	1 cut(s)	217
BsaJI	CCNNGG	1 cut(s)	43
Bse118I	RCCGGY	1 cut(s)	65
BseBI	CCWGG	2 cut(s)	111, 385
BseDI	CCNNGG	1 cut(s)	43
BseXI	GCAGC	1 cut(s)	82
BsgI	GTGCAG	1 cut(s)	222
BshFI	GGCC	1 cut(s)	65
BsiSI	CCGG	1 cut(s)	66
BsnI	GGCC	1 cut(s)	65
Bsp143I	GATC	1 cut(s)	297
BspACI	CCGC	1 cut(s)	314
BspANI	GGCC	1 cut(s)	65
BspHI	TCATGA	1 cut(s)	252
BspMAI	CTGCAG	1 cut(s)	100
BsrFI	RCCGGY	1 cut(s)	65
BssAI	RCCGGY	1 cut(s)	65
BssECI	CCNNGG	1 cut(s)	43
BssMI	GATC	1 cut(s)	297
Bst2UI	CCWGG	2 cut(s)	111, 385
BstC8I	GCNNGC	2 cut(s)	50, 67
BstDSI	CCRYGG	1 cut(s)	43
BstKTI	GATC	1 cut(s)	300
BstMBI	GATC	1 cut(s)	297
BstMWI	GCNNNNNNNGC	2 cut(s)	200, 209
BstNI	CCWGG	2 cut(s)	111, 385
BstNSI	RCATGY	1 cut(s)	52
BstSCI	CCNGG	2 cut(s)	109, 383
BstSFI	CTRYAG	1 cut(s)	96
BstV1I	GCAGC	1 cut(s)	82
BstXI	CCANNNNNNTGG	1 cut(s)	27
BsuRI	GGCC	1 cut(s)	65
BtgI	CCRYGG	1 cut(s)	43
BtgZI	GCGATG	2 cut(s)	129, 240
Cac8I	GCNNGC	2 cut(s)	50, 67
CciI	TCATGA	1 cut(s)	252
Cfr10I	RCCGGY	1 cut(s)	65
CviAII	CATG	3 cut(s)	49, 70, 253
CviJI	RGCY	6 cut(s)	31, 65, 95, 212, 317, 348
CviKI_1	RGCY	6 cut(s)	31, 65, 95, 212, 317, 348
DpnI	GATC	1 cut(s)	299
DpnII	GATC	1 cut(s)	297
EaeI	YGGCCR	1 cut(s)	63
EcoRI	GAATTC	1 cut(s)	139
EcoRII	CCWGG	2 cut(s)	109, 383
EcoT22I	ATGCAT	1 cut(s)	232
FaeI	CATG	3 cut(s)	52, 73, 256
FaiI	YATR	8 cut(s)	50, 71, 156, 187, 254, 329, 343, 364
FatI	CATG	3 cut(s)	48, 69, 252
Fnu4HI	GCNGC	2 cut(s)	96, 315
Fsp4HI	GCNGC	2 cut(s)	96, 315
GluI	GCNGC	2 cut(s)	96, 315
HaeIII	GGCC	1 cut(s)	65
HapII	CCGG	1 cut(s)	66
Hin1II	CATG	3 cut(s)	52, 73, 256
HinfI	GANTC	2 cut(s)	176, 368
HpaII	CCGG	1 cut(s)	66
Hpy188I	TCNGA	1 cut(s)	181
Hpy188III	TCNNGA	1 cut(s)	253
HpyAV	CCTTC	1 cut(s)	174
HpyCH4V	TGCA	4 cut(s)	77, 98, 203, 230
HpyF10VI	GCNNNNNNNGC	2 cut(s)	200, 209
Hsp92II	CATG	3 cut(s)	52, 73, 256
KroI	GCCGGC	1 cut(s)	65
KroNI	GCCGGC	1 cut(s)	67
Kzo9I	GATC	1 cut(s)	297
LpnPI	CCDG	7 cut(s)	17, 79, 96, 123, 129, 226, 370
Lsp1109I	GCAGC	1 cut(s)	82
LweI	GCATC	1 cut(s)	217
MaeIII	GTNAC	2 cut(s)	188, 292
MalI	GATC	1 cut(s)	299
MboI	GATC	1 cut(s)	297
MboII	GAAGA	1 cut(s)	47
MluCI	AATT	2 cut(s)	139, 256
MlyI	GAGTC	1 cut(s)	185
MnlI	CCTC	2 cut(s)	254, 332
Mph1103I	ATGCAT	1 cut(s)	232
MroNI	GCCGGC	1 cut(s)	65
MroXI	GAANNNNTTC	1 cut(s)	163
MseI	TTAA	2 cut(s)	102, 170
MspI	CCGG	1 cut(s)	66
MspR9I	CCNGG	2 cut(s)	111, 385
MvaI	CCWGG	2 cut(s)	111, 385
MwoI	GCNNNNNNNGC	2 cut(s)	200, 209
NaeI	GCCGGC	1 cut(s)	67
NdeII	GATC	1 cut(s)	297
NgoMIV	GCCGGC	1 cut(s)	65
NlaIII	CATG	3 cut(s)	52, 73, 256
NsiI	ATGCAT	1 cut(s)	232
NspI	RCATGY	1 cut(s)	52
PaeI	GCATGC	1 cut(s)	52
PagI	TCATGA	1 cut(s)	252
PdiI	GCCGGC	1 cut(s)	67
PdmI	GAANNNNTTC	1 cut(s)	163
PfeI	GAWTC	1 cut(s)	368
PkrI	GCNGC	2 cut(s)	97, 316
PleI	GAGTC	1 cut(s)	184
PpsI	GAGTC	1 cut(s)	184
Psp6I	CCWGG	2 cut(s)	109, 383
PspGI	CCWGG	2 cut(s)	109, 383
PstI	CTGCAG	1 cut(s)	100
SaqAI	TTAA	2 cut(s)	102, 170
SatI	GCNGC	2 cut(s)	96, 315
Sau3AI	GATC	1 cut(s)	297
SchI	GAGTC	1 cut(s)	185
ScrFI	CCNGG	2 cut(s)	111, 385
SetI	ASST	2 cut(s)	97, 112
SfaNI	GCATC	1 cut(s)	217
SfcI	CTRYAG	1 cut(s)	96
SphI	GCATGC	1 cut(s)	52
Sse9I	AATT	2 cut(s)	139, 256
SsiI	CCGC	1 cut(s)	314
SspI	AATATT	1 cut(s)	151
StyD4I	CCNGG	2 cut(s)	109, 383
TasI	AATT	2 cut(s)	139, 256
TauI	GCSGC	1 cut(s)	317
TfiI	GAWTC	1 cut(s)	368
Tru1I	TTAA	2 cut(s)	102, 170
Tru9I	TTAA	2 cut(s)	102, 170
TseI	GCWGC	1 cut(s)	95
TspDTI	ATGAA	3 cut(s)	17, 241, 269
XapI	RAATTY	2 cut(s)	139, 256
XceI	RCATGY	1 cut(s)	52
XmnI	GAANNNNTTC	1 cut(s)	163
Zsp2I	ATGCAT	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.