Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8499605.1

Orthogroup ID

OG0001225

Physical Location & Seq

Genomic Coordinates Forward (+)

2169 .. 2893

Gene Structure 725 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8499605.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 725 bp

atgcaagccaaccccttccaagtcacggccaaatcaatatacccgtcacttataaacatacctatggtgccccgacagcaccgtcctccttctttgcgacaactcctcaaaccgccatgtgccatctccacttcccctcccaatgactccaaccgttctactccaattaccatgtccgccctagcagtggtcgatgactccgtggctgcgttccgggactaccagtttctctttgtctcgcaacgctcggaaacaaacgagccggtgactctagaagttgttgaaggtgcggtcccgccagagtttccttccggaacatactatttggcaggaccggggctcttcagggacgaccacggctccactgtgcaccctttggatggtcacggctaccttagggctttcactttccatggggttagtgggaacgaggtcaatgtcaagttcatggccaagtacgtgaaaactgagacgcagttggaagagcaggaccccgtgaccggcaagtggcggttcacgcataggggagcgttctcggtgttgaagggaggacagaaaatcgggaacactaaggtgatcaaaaacgtggcgaatactagtgtgttgagctggggtgggaggctgatgtgcttgtgggaaggtggtggggaaccttacgaaattgaaaaggagaccttggaaactgtcgggaaggtcaagctcatggaaggttgcgatccggtggt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001763 GO:0003674 GO:0003824 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008300 GO:0008610 GO:0009056 GO:0009058 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010016 GO:0010033 GO:0010223 GO:0010346 GO:0010436 GO:0010817 GO:0016042 GO:0016106 GO:0016114 GO:0016119 GO:0016121 GO:0016491 GO:0016701 GO:0016702 GO:0018130 GO:0032501 GO:0032502 GO:0042214 GO:0042221 GO:0042445 GO:0042446 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0045549 GO:0046247 GO:0046483 GO:0048367 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051213 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901334 GO:1901336 GO:1901360 GO:1901362 GO:1901575 GO:1901576 GO:1901600 GO:1901601 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00906 map00906

Pfam Domains

Protein Families

RPE65

Protein Analysis

242

Amino Acids

26.62

Weight (kDa)

6.6

Isoelectric Point (pI)

37.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44990 AT2G44990 AT2G44990
fragaria_vesca	FvH4_7g10450
malus_domestica	MD07G1110600.v1.1
prunus_persica	Prupe.2G133900_v2.0.a1
pyrus_communis	pycom07g09530
rosa_chinensis	RchiOBHm_Chr1g0342921 RchiOBHm_Chr1g0342931 RchiOBHm_Chr1g0348141 RchiOBHm_Chr1g0348171 RchiOBHm_Chr1g0348201 RchiOBHm_Chr2g0136091 RchiOBHm_Chr7g0229961
rosa_laevigata	RLG00000028678 RLG00000028682 RLG00000028684 RLG00000028685 RLG00000028686
rosa_multiflora	Rmu_co8414565.1_g000001 Rmu_co8499605.1_g000001 Rmu_sc0001563.1_g000031 Rmu_sc0001890.1_g000013 Rmu_sc0001890.1_g000015 Rmu_sc0002209.1_g000017 Rmu_sc0003991.1_g000009 Rmu_sc0004502.1_g000011 Rmu_sc0004502.1_g000018 Rmu_sc0005046.1_g000018
rosa_roxburghii	Rroxscaffold_4G00307110 Rroxscaffold_4G00307160 Rroxscaffold_4G00307170 Rroxscaffold_4G00307180
rosa_rugosa	Rorug01G0145700.1 Rorug01G0192700 Rorug01G0192900 Rorug01G0193500
rosa_samantha	Rh1AG095900 Rh1AG210700 Rh1AG210800 Rh1BG176200 Rh1BG176800 Rh1BG177100 Rh1BG177200 Rh1CG195000 Rh1CG195100 Rh1DG205900 Rh1DG206300 Rh1DG206600 Rh1DG206700 Rh3DG305500
rosa_wichuraiana	Rw0G011410 Rw1G017570 Rw1G017580 Rw1G017590 Rw1G017800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	53
AasI	GACNNNNNNGTC	1 cut(s)	81
AccB1I	GGYRCC	1 cut(s)	67
AccIII	TCCGGA	1 cut(s)	311
AciI	CCGC	5 cut(s)	113, 177, 290, 296, 511
AclWI	GGATC	1 cut(s)	710
AcoI	YGGCCR	2 cut(s)	27, 450
AcuI	CTGAAG	1 cut(s)	328
AfaI	GTAC	1 cut(s)	458
AfiI	CCNNNNNNNGG	5 cut(s)	25, 187, 380, 500, 507
AgsI	TTSAA	3 cut(s)	284, 544, 665
AhlI	ACTAGT	1 cut(s)	596
AleI	CACNNNNGTG	1 cut(s)	572
AluBI	AGCT	2 cut(s)	609, 700
AluI	AGCT	2 cut(s)	609, 700
Alw21I	GWGCWC	1 cut(s)	372
Alw26I	GTCTC	3 cut(s)	241, 464, 665
Alw44I	GTGCAC	1 cut(s)	368
AlwI	GGATC	1 cut(s)	710
Aor13HI	TCCGGA	1 cut(s)	311
AoxI	GGCC	2 cut(s)	27, 450
ApaLI	GTGCAC	1 cut(s)	368
ApeKI	GCWGC	1 cut(s)	206
AspS9I	GGNCC	3 cut(s)	292, 332, 490
AsuC2I	CCSGG	2 cut(s)	215, 336
AsuHPI	GGTGA	2 cut(s)	277, 586
AvaII	GGWCC	3 cut(s)	292, 332, 490
AxyI	CCTNAGG	1 cut(s)	395
BaeGI	GKGCMC	2 cut(s)	72, 372
BalI	TGGCCA	1 cut(s)	452
BanI	GGYRCC	1 cut(s)	67
BanII	GRGCYC	1 cut(s)	342
Bbv12I	GWGCWC	1 cut(s)	372
BbvI	GCAGC	1 cut(s)	193
BccI	CCATC	2 cut(s)	131, 374
BceAI	ACGGC	3 cut(s)	42, 373, 403
BclI	TGATCA	1 cut(s)	576
BcnI	CCSGG	2 cut(s)	215, 336
BcoDI	GTCTC	3 cut(s)	241, 464, 665
BcuI	ACTAGT	1 cut(s)	596
BfaI	CTAG	3 cut(s)	182, 272, 597
BisI	GCNGC	1 cut(s)	207
BlsI	GCNGC	1 cut(s)	208
Bme1390I	CCNGG	2 cut(s)	215, 336
Bme18I	GGWCC	3 cut(s)	292, 332, 490
BmgT120I	GGNCC	3 cut(s)	292, 332, 490
BmiI	GGNNCC	5 cut(s)	69, 294, 361, 492, 651
BmrFI	CCNGG	2 cut(s)	215, 336
BpuMI	CCSGG	2 cut(s)	215, 336
BsaAI	YACGTR	1 cut(s)	460
BsaI	GGTCTC	1 cut(s)	665
BsaJI	CCNNGG	5 cut(s)	201, 335, 355, 412, 675
BsaWI	WCCGGW	2 cut(s)	311, 718
BsaXI	ACNNNNNCTCC	4 cut(s)	121, 151, 344, 374
Bsc4I	CCNNNNNNNGG	5 cut(s)	25, 187, 380, 500, 507
Bse118I	RCCGGY	2 cut(s)	262, 500
Bse1I	ACTGG	1 cut(s)	223
Bse21I	CCTNAGG	1 cut(s)	395
BseAI	TCCGGA	1 cut(s)	311
BseDI	CCNNGG	5 cut(s)	201, 335, 355, 412, 675
BseGI	GGATG	1 cut(s)	385
BseLI	CCNNNNNNNGG	5 cut(s)	25, 187, 380, 500, 507
BseMII	CTCAG	1 cut(s)	459
BseNI	ACTGG	1 cut(s)	223
BseRI	GAGGAG	1 cut(s)	95
BseSI	GKGCMC	2 cut(s)	72, 372
BseXI	GCAGC	1 cut(s)	193
BseYI	CCCAGC	1 cut(s)	609
BshFI	GGCC	2 cut(s)	29, 452
BshNI	GGYRCC	1 cut(s)	67
BsiHKAI	GWGCWC	1 cut(s)	372
BsiSI	CCGG	6 cut(s)	214, 263, 312, 335, 501, 719
BslFI	GGGAC	3 cut(s)	230, 278, 362
BslI	CCNNNNNNNGG	5 cut(s)	25, 187, 380, 500, 507
BsmAI	GTCTC	3 cut(s)	241, 464, 665
BsmBI	CGTCTC	1 cut(s)	464
BsmFI	GGGAC	3 cut(s)	230, 278, 362
BsnI	GGCC	2 cut(s)	29, 452
Bso31I	GGTCTC	1 cut(s)	665
Bsp1286I	GDGCHC	3 cut(s)	72, 342, 372
Bsp13I	TCCGGA	1 cut(s)	311
Bsp143I	GATC	2 cut(s)	576, 715
Bsp19I	CCATGG	1 cut(s)	412
BspACI	CCGC	5 cut(s)	113, 177, 290, 296, 511
BspANI	GGCC	2 cut(s)	29, 452
BspCNI	CTCAG	1 cut(s)	460
BspEI	TCCGGA	1 cut(s)	311
BspLI	GGNNCC	5 cut(s)	69, 294, 361, 492, 651
BspPI	GGATC	1 cut(s)	710
BspQI	GCTCTTC	2 cut(s)	347, 477
BspT107I	GGYRCC	1 cut(s)	67
BspTNI	GGTCTC	1 cut(s)	665
BsrFI	RCCGGY	2 cut(s)	262, 500
BsrI	ACTGG	1 cut(s)	223
BssAI	RCCGGY	2 cut(s)	262, 500
BssECI	CCNNGG	5 cut(s)	201, 335, 355, 412, 675
BssMI	GATC	2 cut(s)	576, 715
BssT1I	CCWWGG	2 cut(s)	412, 675
Bst4CI	ACNGT	4 cut(s)	83, 155, 367, 685
Bst6I	CTCTTC	2 cut(s)	347, 477
BstBAI	YACGTR	1 cut(s)	460
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	3 cut(s)	395, 468, 570
BstDSI	CCRYGG	3 cut(s)	201, 355, 412
BstF5I	GGATG	1 cut(s)	385
BstKTI	GATC	2 cut(s)	579, 718
BstMAI	GTCTC	3 cut(s)	241, 464, 665
BstMBI	GATC	2 cut(s)	576, 715
BstMWI	GCNNNNNNNGC	2 cut(s)	76, 517
BstSCI	CCNGG	2 cut(s)	213, 334
BstSLI	GKGCMC	2 cut(s)	72, 372
BstV1I	GCAGC	1 cut(s)	193
Bsu36I	CCTNAGG	1 cut(s)	395
BsuRI	GGCC	2 cut(s)	29, 452
BtgI	CCRYGG	3 cut(s)	201, 355, 412
BtsCI	GGATG	1 cut(s)	385
BtsI	GCAGTG	1 cut(s)	192
BtsIMutI	CAGTG	2 cut(s)	192, 363
Cac8I	GCNNGC	1 cut(s)	6
Cfr10I	RCCGGY	2 cut(s)	262, 500
Cfr13I	GGNCC	3 cut(s)	292, 332, 490
CseI	GACGC	1 cut(s)	481
Csp6I	GTAC	1 cut(s)	457
CviAII	CATG	5 cut(s)	117, 172, 413, 448, 703
CviQI	GTAC	1 cut(s)	457
DdeI	CTNAG	3 cut(s)	395, 468, 570
DpnI	GATC	2 cut(s)	578, 717
DpnII	GATC	2 cut(s)	576, 715
DrdI	GACNNNNNNGTC	1 cut(s)	81
DseDI	GACNNNNNNGTC	1 cut(s)	81
EaeI	YGGCCR	2 cut(s)	27, 450
Eam1104I	CTCTTC	2 cut(s)	347, 477
EarI	CTCTTC	2 cut(s)	347, 477
EciI	GGCGGA	1 cut(s)	166
Eco130I	CCWWGG	2 cut(s)	412, 675
Eco24I	GRGCYC	1 cut(s)	342
Eco31I	GGTCTC	1 cut(s)	665
Eco47I	GGWCC	3 cut(s)	292, 332, 490
Eco57I	CTGAAG	1 cut(s)	328
Eco81I	CCTNAGG	1 cut(s)	395
EcoO109I	RGGNCCY	1 cut(s)	490
EcoT14I	CCWWGG	2 cut(s)	412, 675
EcoT38I	GRGCYC	1 cut(s)	342
ErhI	CCWWGG	2 cut(s)	412, 675
Esp3I	CGTCTC	1 cut(s)	464
FaeI	CATG	5 cut(s)	120, 175, 416, 451, 706
FalI	AAGNNNNNCTT	2 cut(s)	659, 691
FaqI	GGGAC	3 cut(s)	230, 278, 362
FatI	CATG	5 cut(s)	116, 171, 412, 447, 702
FauI	CCCGC	1 cut(s)	303
FbaI	TGATCA	1 cut(s)	576
Fnu4HI	GCNGC	1 cut(s)	207
FokI	GGATG	1 cut(s)	392
FriOI	GRGCYC	1 cut(s)	342
Fsp4HI	GCNGC	1 cut(s)	207
FspBI	CTAG	3 cut(s)	182, 272, 597
GluI	GCNGC	1 cut(s)	207
GsaI	CCCAGC	1 cut(s)	613
HaeIII	GGCC	2 cut(s)	29, 452
HapII	CCGG	6 cut(s)	214, 263, 312, 335, 501, 719
HgaI	GACGC	1 cut(s)	481
Hin1II	CATG	5 cut(s)	120, 175, 416, 451, 706
HinfI	GANTC	3 cut(s)	146, 197, 268
HpaII	CCGG	6 cut(s)	214, 263, 312, 335, 501, 719
HphI	GGTGA	2 cut(s)	277, 586
Hpy166II	GTNNAC	2 cut(s)	370, 516
Hpy188I	TCNGA	1 cut(s)	250
Hpy188III	TCNNGA	4 cut(s)	272, 312, 562, 688
Hpy8I	GTNNAC	2 cut(s)	370, 516
HpyAV	CCTTC	8 cut(s)	25, 99, 278, 318, 538, 632, 685, 701
HpyCH4III	ACNGT	4 cut(s)	83, 155, 367, 685
HpyCH4IV	ACGT	2 cut(s)	459, 585
HpyCH4V	TGCA	2 cut(s)	4, 370
HpyF10VI	GCNNNNNNNGC	2 cut(s)	76, 517
HpyF3I	CTNAG	3 cut(s)	395, 468, 570
HpySE526I	ACGT	2 cut(s)	459, 585
Hsp92II	CATG	5 cut(s)	120, 175, 416, 451, 706
Kpn2I	TCCGGA	1 cut(s)	311
Ksp22I	TGATCA	1 cut(s)	576
Kzo9I	GATC	2 cut(s)	576, 715
LguI	GCTCTTC	2 cut(s)	347, 477
LmnI	GCTCC	2 cut(s)	365, 527
Lsp1109I	GCAGC	1 cut(s)	193
MaeI	CTAG	3 cut(s)	182, 272, 597
MaeII	ACGT	2 cut(s)	459, 585
MaeIII	GTNAC	5 cut(s)	22, 45, 265, 383, 496
MalI	GATC	2 cut(s)	578, 717
MboI	GATC	2 cut(s)	576, 715
MboII	GAAGA	2 cut(s)	334, 494
MhlI	GDGCHC	3 cut(s)	72, 342, 372
MlsI	TGGCCA	1 cut(s)	452
MluCI	AATT	2 cut(s)	165, 660
MluNI	TGGCCA	1 cut(s)	452
MlyI	GAGTC	3 cut(s)	140, 191, 262
MmeI	TCCRAC	2 cut(s)	174, 459
MnlI	CCTC	6 cut(s)	96, 116, 147, 424, 542, 612
Mox20I	TGGCCA	1 cut(s)	452
MroI	TCCGGA	1 cut(s)	311
MscI	TGGCCA	1 cut(s)	452
MslI	CAYNNNNRTG	2 cut(s)	62, 572
Msp20I	TGGCCA	1 cut(s)	452
MspI	CCGG	6 cut(s)	214, 263, 312, 335, 501, 719
MspR9I	CCNGG	2 cut(s)	215, 336
MwoI	GCNNNNNNNGC	2 cut(s)	76, 517
NciI	CCSGG	2 cut(s)	215, 336
NcoI	CCATGG	1 cut(s)	412
NdeII	GATC	2 cut(s)	576, 715
NlaIII	CATG	5 cut(s)	120, 175, 416, 451, 706
NlaIV	GGNNCC	5 cut(s)	69, 294, 361, 492, 651
NmuCI	GTSAC	5 cut(s)	22, 45, 265, 383, 496
OliI	CACNNNNGTG	1 cut(s)	572
PciSI	GCTCTTC	2 cut(s)	347, 477
PcsI	WCGNNNNNNNCGW	1 cut(s)	198
PfoI	TCCNGGA	1 cut(s)	213
PkrI	GCNGC	1 cut(s)	208
PleI	GAGTC	3 cut(s)	140, 191, 262
PpsI	GAGTC	3 cut(s)	140, 191, 262
Ppu21I	YACGTR	1 cut(s)	460
PpuMI	RGGWCCY	1 cut(s)	490
PsiI	TTATAA	1 cut(s)	53
Psp5II	RGGWCCY	1 cut(s)	490
PspFI	CCCAGC	1 cut(s)	609
PspN4I	GGNNCC	5 cut(s)	69, 294, 361, 492, 651
PspPI	GGNCC	3 cut(s)	292, 332, 490
PspPPI	RGGWCCY	1 cut(s)	490
RsaI	GTAC	1 cut(s)	458
RsaNI	GTAC	1 cut(s)	457
RseI	CAYNNNNRTG	2 cut(s)	62, 572
SapI	GCTCTTC	2 cut(s)	347, 477
SatI	GCNGC	1 cut(s)	207
Sau3AI	GATC	2 cut(s)	576, 715
Sau96I	GGNCC	3 cut(s)	292, 332, 490
SchI	GAGTC	3 cut(s)	140, 191, 262
ScrFI	CCNGG	2 cut(s)	215, 336
SduI	GDGCHC	3 cut(s)	72, 342, 372
SinI	GGWCC	3 cut(s)	292, 332, 490
SmiMI	CAYNNNNRTG	2 cut(s)	62, 572
SpeI	ACTAGT	1 cut(s)	596
Sse9I	AATT	2 cut(s)	165, 660
SsiI	CCGC	5 cut(s)	113, 177, 290, 296, 511
SspMI	CTAG	3 cut(s)	182, 272, 597
StyD4I	CCNGG	2 cut(s)	213, 334
StyI	CCWWGG	2 cut(s)	412, 675
TaaI	ACNGT	4 cut(s)	83, 155, 367, 685
TaiI	ACGT	2 cut(s)	462, 588
TaqI	TCGA	1 cut(s)	192
TasI	AATT	2 cut(s)	165, 660
TscAI	CASTG	2 cut(s)	192, 370
TseFI	GTSAC	5 cut(s)	22, 45, 265, 383, 496
TseI	GCWGC	1 cut(s)	206
Tsp45I	GTSAC	5 cut(s)	22, 45, 265, 383, 496
TspDTI	ATGAA	1 cut(s)	436
TspGWI	ACGGA	1 cut(s)	190
TspRI	CASTG	2 cut(s)	192, 370
VneI	GTGCAC	1 cut(s)	368
VpaK11BI	GGWCC	3 cut(s)	292, 332, 490
XbaI	TCTAGA	1 cut(s)	271
XcmI	CCANNNNNNNNNTGG	1 cut(s)	419
XspI	CTAG	3 cut(s)	182, 272, 597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.