Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001225

Physical Location & Seq

Genomic Coordinates Reverse (-)

26303680 .. 26306465

Gene Structure 2786 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028685

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGCTGGGAACCTCTACCACGAACGTCGCCGAATTTACGACATGCGTGGCTTAGATGGCGACGAGCGCCTGAAGAGAGACCTGTGCGGTGCAATGACTTCAGTTTGTGGAATCACTCCAGCAGTGACAGCATTATCTGTGAATCCTACCAAAGACACATCTCCAATATATTTGCTTCCTAGGTTTCCTAATGATGTGAATTGTAGTCGAGATTGGAGAGTACCTATTGAAGCTCCTTCACGATTTTGGCTGCAACATGTAGGCAATGCCTATGATTATTTGGATGAAAATGGGAATTCGGAGATCCAGATACATGCTTCTGTTTGCTCTTACGAGTCGTTCACTTTGCAAAAGTTGTTTGGATATGATTGGCAAAGTGGAAAACTCGACCCTTCGATTATGAACTTGGATAGAAACCAAAGCAAAAAATTGCCTCACCTTGTTCAGCACGGCATTGCCCGACGACCCAAGCCGGAAAACCAGGACCACCCGACTTGTAGGTCAATCCGGATCCACCGACGAGAATCAACTACAGCCACGCACCGCACCTCCAAGTCGGAATCAGGAGAAAAGAAACCCCTGCACTCAATACCTGACCCGATCAGTCACACTACCGTCGACCTCTTCGATCCGCTGTTCTTCCTCCATCATCGAAAGACCAGCGTCCAAGCACCAAATAATGCGATTTGGAATCCGACCTACCGGCCAACACAGTCCCACCCGAAGTTGTCTCGACCTGCGACAAGAAGCCCTGTCTCCGCTAGACCAGCTTGCAACCTCAGGAACTTCAGTCGCCGCTCTCTGCTAAACCCTAGGGTTTCTTTACCTTATTATCATCTACTGTTTTTGATATCTTTGATGGCTCCCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001763 GO:0003674 GO:0003824 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008300 GO:0008610 GO:0009056 GO:0009058 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010016 GO:0010033 GO:0010223 GO:0010346 GO:0010436 GO:0010817 GO:0016042 GO:0016106 GO:0016114 GO:0016119 GO:0016121 GO:0016491 GO:0016701 GO:0016702 GO:0018130 GO:0032501 GO:0032502 GO:0042214 GO:0042221 GO:0042445 GO:0042446 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0045549 GO:0046247 GO:0046483 GO:0048367 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051213 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901334 GO:1901336 GO:1901360 GO:1901362 GO:1901575 GO:1901576 GO:1901600 GO:1901601 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00906 map00906

Pfam Domains

Protein Families

RPE65

Protein Analysis

291

Amino Acids

33.23

Weight (kDa)

9.71

Isoelectric Point (pI)

54.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44990 AT2G44990 AT2G44990
fragaria_vesca	FvH4_7g10450
malus_domestica	MD07G1110600.v1.1
prunus_persica	Prupe.2G133900_v2.0.a1
pyrus_communis	pycom07g09530
rosa_chinensis	RchiOBHm_Chr1g0342921 RchiOBHm_Chr1g0342931 RchiOBHm_Chr1g0348141 RchiOBHm_Chr1g0348171 RchiOBHm_Chr1g0348201 RchiOBHm_Chr2g0136091 RchiOBHm_Chr7g0229961
rosa_laevigata	RLG00000028678 RLG00000028682 RLG00000028684 RLG00000028685 RLG00000028686
rosa_multiflora	Rmu_co8414565.1_g000001 Rmu_co8499605.1_g000001 Rmu_sc0001563.1_g000031 Rmu_sc0001890.1_g000013 Rmu_sc0001890.1_g000015 Rmu_sc0002209.1_g000017 Rmu_sc0003991.1_g000009 Rmu_sc0004502.1_g000011 Rmu_sc0004502.1_g000018 Rmu_sc0005046.1_g000018
rosa_roxburghii	Rroxscaffold_4G00307110 Rroxscaffold_4G00307160 Rroxscaffold_4G00307170 Rroxscaffold_4G00307180
rosa_rugosa	Rorug01G0145700.1 Rorug01G0192700 Rorug01G0192900 Rorug01G0193500
rosa_samantha	Rh1AG095900 Rh1AG210700 Rh1AG210800 Rh1BG176200 Rh1BG176800 Rh1BG177100 Rh1BG177200 Rh1CG195000 Rh1CG195100 Rh1DG205900 Rh1DG206300 Rh1DG206600 Rh1DG206700 Rh3DG305500
rosa_wichuraiana	Rw0G011410 Rw1G017570 Rw1G017580 Rw1G017590 Rw1G017800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	499
Acc36I	ACCTGC	1 cut(s)	745
AccBSI	CCGCTC	1 cut(s)	798
AccI	GTMKAC	1 cut(s)	618
AccIII	TCCGGA	1 cut(s)	507
AciI	CCGC	5 cut(s)	87, 544, 632, 759, 796
AclWI	GGATC	4 cut(s)	298, 505, 518, 623
AcoI	YGGCCR	1 cut(s)	704
AcsI	RAATTY	2 cut(s)	33, 295
AcuI	CTGAAG	3 cut(s)	84, 92, 772
AfaI	GTAC	1 cut(s)	222
AflIII	ACRYGT	1 cut(s)	256
AgsI	TTSAA	1 cut(s)	230
AjnI	CCWGG	1 cut(s)	480
AluBI	AGCT	2 cut(s)	233, 770
AluI	AGCT	2 cut(s)	233, 770
Alw26I	GTCTC	3 cut(s)	72, 735, 760
AlwI	GGATC	4 cut(s)	298, 505, 518, 623
Aor13HI	TCCGGA	1 cut(s)	507
AoxI	GGCC	1 cut(s)	704
ApeKI	GCWGC	1 cut(s)	250
ApoI	RAATTY	2 cut(s)	33, 295
AspA2I	CCTAGG	2 cut(s)	179, 812
AspLEI	GCGC	1 cut(s)	69
AspS9I	GGNCC	1 cut(s)	484
AsuHPI	GGTGA	1 cut(s)	428
AvaII	GGWCC	1 cut(s)	484
AvrII	CCTAGG	2 cut(s)	179, 812
AxyI	CCTNAGG	1 cut(s)	779
BamHI	GGATCC	1 cut(s)	510
BbvI	GCAGC	1 cut(s)	237
BccI	CCATC	3 cut(s)	50, 654, 853
BceAI	ACGGC	1 cut(s)	466
BciT130I	CCWGG	1 cut(s)	482
BcoDI	GTCTC	3 cut(s)	72, 735, 760
BfaI	CTAG	3 cut(s)	180, 762, 813
BfmI	CTRYAG	1 cut(s)	531
BfoI	RGCGCY	1 cut(s)	70
BfuAI	ACCTGC	1 cut(s)	745
BisI	GCNGC	2 cut(s)	251, 796
BlnI	CCTAGG	2 cut(s)	179, 812
BlsI	GCNGC	2 cut(s)	252, 797
Bme1390I	CCNGG	1 cut(s)	482
Bme18I	GGWCC	1 cut(s)	484
BmgT120I	GGNCC	1 cut(s)	484
BmiI	GGNNCC	3 cut(s)	11, 512, 864
BmrFI	CCNGG	1 cut(s)	482
BoxI	GACNNNNGTC	1 cut(s)	662
BpmI	CTGGAG	1 cut(s)	102
BsaI	GGTCTC	1 cut(s)	72
BsaJI	CCNNGG	2 cut(s)	179, 812
BsaWI	WCCGGW	1 cut(s)	507
BsaXI	ACNNNNNCTCC	2 cut(s)	533, 563
Bse118I	RCCGGY	1 cut(s)	702
Bse21I	CCTNAGG	1 cut(s)	779
Bse3DI	GCAATG	3 cut(s)	99, 271, 453
BseAI	TCCGGA	1 cut(s)	507
BseBI	CCWGG	1 cut(s)	482
BseDI	CCNNGG	2 cut(s)	179, 812
BseGI	GGATG	1 cut(s)	289
BseMI	GCAATG	3 cut(s)	99, 271, 453
BseMII	CTCAG	1 cut(s)	793
BseXI	GCAGC	1 cut(s)	237
BseYI	CCCAGC	1 cut(s)	5
BsgI	GTGCAG	1 cut(s)	566
BshFI	GGCC	1 cut(s)	706
BsiSI	CCGG	3 cut(s)	473, 508, 703
BslFI	GGGAC	1 cut(s)	700
BsmAI	GTCTC	3 cut(s)	72, 735, 760
BsmFI	GGGAC	1 cut(s)	700
BsnI	GGCC	1 cut(s)	706
Bso31I	GGTCTC	1 cut(s)	72
Bsp13I	TCCGGA	1 cut(s)	507
Bsp143I	GATC	4 cut(s)	303, 510, 600, 628
BspACI	CCGC	5 cut(s)	87, 544, 632, 759, 796
BspANI	GGCC	1 cut(s)	706
BspCNI	CTCAG	1 cut(s)	792
BspEI	TCCGGA	1 cut(s)	507
BspLI	GGNNCC	3 cut(s)	11, 512, 864
BspMI	ACCTGC	1 cut(s)	745
BspPI	GGATC	4 cut(s)	298, 505, 518, 623
BspTNI	GGTCTC	1 cut(s)	72
BsrBI	CCGCTC	1 cut(s)	798
BsrDI	GCAATG	3 cut(s)	99, 271, 453
BsrFI	RCCGGY	1 cut(s)	702
BssAI	RCCGGY	1 cut(s)	702
BssECI	CCNNGG	2 cut(s)	179, 812
BssMI	GATC	4 cut(s)	303, 510, 600, 628
BssT1I	CCWWGG	2 cut(s)	179, 812
Bst2UI	CCWGG	1 cut(s)	482
Bst4CI	ACNGT	3 cut(s)	616, 714, 843
Bst6I	CTCTTC	2 cut(s)	68, 629
BstC8I	GCNNGC	1 cut(s)	772
BstDEI	CTNAG	2 cut(s)	52, 779
BstF5I	GGATG	1 cut(s)	289
BstH2I	RGCGCY	1 cut(s)	70
BstHHI	GCGC	1 cut(s)	69
BstKTI	GATC	4 cut(s)	306, 513, 603, 631
BstMAI	GTCTC	3 cut(s)	72, 735, 760
BstMBI	GATC	4 cut(s)	303, 510, 600, 628
BstMWI	GCNNNNNNNGC	4 cut(s)	57, 66, 128, 767
BstNI	CCWGG	1 cut(s)	482
BstNSI	RCATGY	3 cut(s)	46, 260, 317
BstPAI	GACNNNNGTC	1 cut(s)	662
BstSCI	CCNGG	1 cut(s)	480
BstSFI	CTRYAG	1 cut(s)	531
BstV1I	GCAGC	1 cut(s)	237
BstX2I	RGATCY	2 cut(s)	303, 510
BstYI	RGATCY	2 cut(s)	303, 510
Bsu36I	CCTNAGG	1 cut(s)	779
BsuRI	GGCC	1 cut(s)	706
BtsCI	GGATG	1 cut(s)	289
BtsI	GCAGTG	1 cut(s)	129
BtsIMutI	CAGTG	1 cut(s)	129
BveI	ACCTGC	1 cut(s)	745
Cac8I	GCNNGC	1 cut(s)	772
CfoI	GCGC	1 cut(s)	69
Cfr10I	RCCGGY	1 cut(s)	702
Cfr13I	GGNCC	1 cut(s)	484
CseI	GACGC	1 cut(s)	652
Csp6I	GTAC	1 cut(s)	221
CspCI	CAANNNNNGTGG	2 cut(s)	476, 511
CviAII	CATG	3 cut(s)	43, 257, 314
CviQI	GTAC	1 cut(s)	221
DdeI	CTNAG	2 cut(s)	52, 779
DpnI	GATC	4 cut(s)	305, 512, 602, 630
DpnII	GATC	4 cut(s)	303, 510, 600, 628
DrdI	GACNNNNNNGTC	1 cut(s)	499
DseDI	GACNNNNNNGTC	1 cut(s)	499
EaeI	YGGCCR	1 cut(s)	704
Eam1104I	CTCTTC	2 cut(s)	68, 629
EarI	CTCTTC	2 cut(s)	68, 629
Eco130I	CCWWGG	2 cut(s)	179, 812
Eco31I	GGTCTC	1 cut(s)	72
Eco32I	GATATC	1 cut(s)	852
Eco47I	GGWCC	1 cut(s)	484
Eco57I	CTGAAG	3 cut(s)	84, 92, 772
Eco81I	CCTNAGG	1 cut(s)	779
EcoRI	GAATTC	1 cut(s)	295
EcoRII	CCWGG	1 cut(s)	480
EcoRV	GATATC	1 cut(s)	852
EcoT14I	CCWWGG	2 cut(s)	179, 812
ErhI	CCWWGG	2 cut(s)	179, 812
FaeI	CATG	3 cut(s)	46, 260, 317
FaiI	YATR	7 cut(s)	44, 169, 258, 273, 315, 366, 401
FaqI	GGGAC	1 cut(s)	700
FatI	CATG	3 cut(s)	42, 256, 313
FblI	GTMKAC	1 cut(s)	618
Fnu4HI	GCNGC	2 cut(s)	251, 796
FokI	GGATG	1 cut(s)	296
Fsp4HI	GCNGC	2 cut(s)	251, 796
FspBI	CTAG	3 cut(s)	180, 762, 813
GlaI	GCGC	1 cut(s)	68
GluI	GCNGC	2 cut(s)	251, 796
GsaI	CCCAGC	1 cut(s)	9
GsuI	CTGGAG	1 cut(s)	102
HaeII	RGCGCY	1 cut(s)	70
HaeIII	GGCC	1 cut(s)	706
HapII	CCGG	3 cut(s)	473, 508, 703
HgaI	GACGC	1 cut(s)	652
HhaI	GCGC	1 cut(s)	69
Hin1II	CATG	3 cut(s)	46, 260, 317
Hin6I	GCGC	1 cut(s)	67
HinP1I	GCGC	1 cut(s)	67
HincII	GTYRAC	1 cut(s)	619
HindII	GTYRAC	1 cut(s)	619
HinfI	GANTC	6 cut(s)	111, 142, 335, 524, 560, 691
HpaII	CCGG	3 cut(s)	473, 508, 703
HphI	GGTGA	1 cut(s)	428
Hpy166II	GTNNAC	2 cut(s)	342, 619
Hpy188I	TCNGA	3 cut(s)	301, 559, 696
Hpy188III	TCNNGA	7 cut(s)	209, 240, 307, 508, 564, 732, 781
Hpy8I	GTNNAC	2 cut(s)	342, 619
Hpy99I	CGWCG	5 cut(s)	30, 65, 465, 522, 620
HpyAV	CCTTC	2 cut(s)	246, 402
HpyCH4III	ACNGT	3 cut(s)	616, 714, 843
HpyCH4IV	ACGT	1 cut(s)	25
HpyCH4V	TGCA	5 cut(s)	92, 253, 349, 583, 774
HpyF10VI	GCNNNNNNNGC	4 cut(s)	57, 66, 128, 767
HpyF3I	CTNAG	2 cut(s)	52, 779
HpySE526I	ACGT	1 cut(s)	25
Hsp92II	CATG	3 cut(s)	46, 260, 317
HspAI	GCGC	1 cut(s)	67
Kpn2I	TCCGGA	1 cut(s)	507
Kzo9I	GATC	4 cut(s)	303, 510, 600, 628
LmnI	GCTCC	2 cut(s)	238, 868
Lsp1109I	GCAGC	1 cut(s)	237
MaeI	CTAG	3 cut(s)	180, 762, 813
MaeII	ACGT	1 cut(s)	25
MaeIII	GTNAC	2 cut(s)	124, 605
MalI	GATC	4 cut(s)	305, 512, 602, 630
MbiI	CCGCTC	1 cut(s)	798
MboI	GATC	4 cut(s)	303, 510, 600, 628
MboII	GAAGA	3 cut(s)	85, 616, 631
MflI	RGATCY	2 cut(s)	303, 510
MluCI	AATT	4 cut(s)	33, 199, 295, 428
MlyI	GAGTC	1 cut(s)	344
MmeI	TCCRAC	2 cut(s)	537, 719
MnlI	CCTC	6 cut(s)	23, 444, 559, 632, 653, 788
MroI	TCCGGA	1 cut(s)	507
MspA1I	CMGCKG	1 cut(s)	634
MspI	CCGG	3 cut(s)	473, 508, 703
MspR9I	CCNGG	1 cut(s)	482
MvaI	CCWGG	1 cut(s)	482
MwoI	GCNNNNNNNGC	4 cut(s)	57, 66, 128, 767
NdeII	GATC	4 cut(s)	303, 510, 600, 628
NlaIII	CATG	3 cut(s)	46, 260, 317
NlaIV	GGNNCC	3 cut(s)	11, 512, 864
NmuCI	GTSAC	2 cut(s)	124, 605
NspI	RCATGY	3 cut(s)	46, 260, 317
PciI	ACATGT	1 cut(s)	256
PcsI	WCGNNNNNNNCGW	1 cut(s)	624
PfeI	GAWTC	5 cut(s)	111, 142, 524, 560, 691
PkrI	GCNGC	2 cut(s)	252, 797
PleI	GAGTC	1 cut(s)	343
PpsI	GAGTC	1 cut(s)	343
PscI	ACATGT	1 cut(s)	256
PshAI	GACNNNNGTC	1 cut(s)	662
Psp6I	CCWGG	1 cut(s)	480
PspFI	CCCAGC	1 cut(s)	5
PspGI	CCWGG	1 cut(s)	480
PspN4I	GGNNCC	3 cut(s)	11, 512, 864
PspPI	GGNCC	1 cut(s)	484
PsuI	RGATCY	2 cut(s)	303, 510
RsaI	GTAC	1 cut(s)	222
RsaNI	GTAC	1 cut(s)	221
SalI	GTCGAC	1 cut(s)	617
SatI	GCNGC	2 cut(s)	251, 796
Sau3AI	GATC	4 cut(s)	303, 510, 600, 628
Sau96I	GGNCC	1 cut(s)	484
SchI	GAGTC	1 cut(s)	344
ScrFI	CCNGG	1 cut(s)	482
SfcI	CTRYAG	1 cut(s)	531
SinI	GGWCC	1 cut(s)	484
Sse9I	AATT	4 cut(s)	33, 199, 295, 428
SsiI	CCGC	5 cut(s)	87, 544, 632, 759, 796
SspMI	CTAG	3 cut(s)	180, 762, 813
StyD4I	CCNGG	1 cut(s)	480
StyI	CCWWGG	2 cut(s)	179, 812
TaaI	ACNGT	3 cut(s)	616, 714, 843
TaiI	ACGT	1 cut(s)	28
TaqI	TCGA	7 cut(s)	208, 387, 395, 618, 627, 652, 733
TasI	AATT	4 cut(s)	33, 199, 295, 428
TauI	GCSGC	1 cut(s)	798
TfiI	GAWTC	5 cut(s)	111, 142, 524, 560, 691
TscAI	CASTG	1 cut(s)	129
TseFI	GTSAC	2 cut(s)	124, 605
TseI	GCWGC	1 cut(s)	250
Tsp45I	GTSAC	2 cut(s)	124, 605
TspDTI	ATGAA	2 cut(s)	300, 416
TspRI	CASTG	1 cut(s)	129
VpaK11BI	GGWCC	1 cut(s)	484
XapI	RAATTY	2 cut(s)	33, 295
XceI	RCATGY	3 cut(s)	46, 260, 317
XmaJI	CCTAGG	2 cut(s)	179, 812
XmiI	GTMKAC	1 cut(s)	618
XspI	CTAG	3 cut(s)	180, 762, 813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.