Rroxscaffold_4G00307170

Carotenoid cleavage dioxygenase 7

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
28253070 .. 28257105
4036 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00307170.1

Sequence Viewer

Length: 1041 bp
ATGACCGCATTATCTGTGAATCCTACCAAGGACGCATCGCCAATATATTTGCTTCCTAGGTTTCCTAATGATCTGAATTGTAGTCGAGATTGGAGAGTACCTATTGAAGCTCCTTCACGATTTTGGCTGCAACATGTAGGCAATGCCTATGATTATTTGGATGAAAATGGGAATTCGGAGATCCAGATACATGCTTCTGTTTGCTCTTACGAGTGGTTCACTTTGCAAAAGTTGTTTGGATATGATTGGCGAAGTGGTAAACTCGACCCTTCAATTATGAACTTGGGTCGAAACCACAGCAAAATATTGCCTCACCTTGTTCAGGTTTCCATCAACTTGGATGTCCATGGGATCTGTCACAGATGTGAGGTGGAGCCTTTGAATGAGTGGAACAAGTCATCAGATTTTCCTATTATCAATCCAGCATTTTCAGGCCGCAAAAATAATTACGTATATGCACCAAGTACTTCAGGTTCTCGCAGTGAATTGCCAAACTTTCCATTTGACATGGTGGTAAAGCTCAATCTTTCAACTAAATCTGTGGACACATGGTTTGCTGGTAATAGAAGATTTGTCGGCGAACCCACATTCGTTGGTAAAGGTTCTGAAGAAGATGACGGTTACATTCTTGTAGTCGAGGTCATTCAACTGGCAAATTATCAACCACTCGATTATCAATTTCATAGTTTTAGCACCAACTCCAAATACACACACACACACACACTAATATACAAGTCTGTTCTGAGACGGAGGTCAGCATTACCCCAAAAGTGCGAACGTCGATACTTCTGCTCAGTTAAGGCGCCGACAGTGAGGCGTGTCTTGCCCGACGAGAGGTCAGGGGTCGATTTTGACCTTCTTCTTGTTGGTGGACTCGTCGGTTACCAGTTTGCAGTCGCTGCCGAGAACCTTGAAGTTTCAGGTGAGGGCGCTTCCCAAAACCTTCGAGCTCGAGCTCCTTCGACCTTGATCTCCATGGTGAAGCGGTCTGGAATGCCCCTGGCCTTCGTCGACATGACCCACGCAGCCATCGGCGCCTGA

Protein Analysis

346

Amino Acids

38.99

Weight (kDa)

7.66

Isoelectric Point (pI)

45.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RPE65 PF03055 3 - 213 8.3e-26 Retinal pigment epithelial membrane protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 802, 1034
AccI GTMKAC 1 cut(s) 1011
AciI CCGC 3 cut(s) 6, 436, 985
AclWI GGATC 2 cut(s) 175, 359
AcsI RAATTY 1 cut(s) 172
AcuI CTGAAG 2 cut(s) 453, 627
AcyI GRCGYC 2 cut(s) 803, 1035
AfaI GTAC 2 cut(s) 99, 466
AfiI CCNNNNNNNGG 2 cut(s) 322, 834
AflIII ACRYGT 1 cut(s) 133
AgsI TTSAA 6 cut(s) 107, 273, 382, 531, 647, 914
AhdI GACNNNNNGTC 1 cut(s) 835
AjnI CCWGG 1 cut(s) 999
AleI CACNNNNGTG 1 cut(s) 363
AluBI AGCT 4 cut(s) 110, 520, 950, 956
AluI AGCT 4 cut(s) 110, 520, 950, 956
Alw21I GWGCWC 2 cut(s) 952, 958
Alw26I GTCTC 1 cut(s) 739
AlwI GGATC 2 cut(s) 175, 359
AlwNI CAGNNNCTG 1 cut(s) 899
Ama87I CYCGRG 1 cut(s) 951
AoxI GGCC 2 cut(s) 433, 1002
ApeKI GCWGC 3 cut(s) 127, 899, 1025
ApoI RAATTY 1 cut(s) 172
ArsI GACNNNNNNTTYG 2 cut(s) 536, 568
AspA2I CCTAGG 1 cut(s) 56
AspLEI GCGC 3 cut(s) 805, 932, 1037
AsuHPI GGTGA 3 cut(s) 305, 935, 991
AvaI CYCGRG 1 cut(s) 951
AvrII CCTAGG 1 cut(s) 56
BanI GGYRCC 2 cut(s) 802, 1034
BanII GRGCYC 2 cut(s) 952, 958
Bbv12I GWGCWC 2 cut(s) 952, 958
BbvI GCAGC 3 cut(s) 114, 886, 1037
BccI CCATC 2 cut(s) 338, 1037
BcgI CGANNNNNNTGC 2 cut(s) 771, 805
BciT130I CCWGG 1 cut(s) 1001
BcoDI GTCTC 1 cut(s) 739
BfaI CTAG 1 cut(s) 57
BfoI RGCGCY 3 cut(s) 806, 933, 1038
BisI GCNGC 4 cut(s) 128, 436, 900, 1026
BlnI CCTAGG 1 cut(s) 56
BlsI GCNGC 4 cut(s) 129, 437, 901, 1027
BmcAI AGTACT 1 cut(s) 466
Bme1390I CCNGG 1 cut(s) 1001
BmeRI GACNNNNNGTC 1 cut(s) 835
BmeT110I CYCGRG 1 cut(s) 951
BmiI GGNNCC 3 cut(s) 375, 804, 1036
BmrFI CCNGG 1 cut(s) 1001
BmsI GCATC 1 cut(s) 44
BoxI GACNNNNGTC 1 cut(s) 751
BsaAI YACGTR 1 cut(s) 451
BsaHI GRCGYC 2 cut(s) 803, 1035
BsaJI CCNNGG 5 cut(s) 27, 56, 346, 975, 999
Bsc4I CCNNNNNNNGG 2 cut(s) 322, 834
Bse1I ACTGG 2 cut(s) 654, 886
Bse3DI GCAATG 1 cut(s) 148
BseBI CCWGG 1 cut(s) 1001
BseDI CCNNGG 5 cut(s) 27, 56, 346, 975, 999
BseGI GGATG 2 cut(s) 166, 346
BseLI CCNNNNNNNGG 2 cut(s) 322, 834
BseMI GCAATG 1 cut(s) 148
BseMII CTCAG 2 cut(s) 734, 807
BseNI ACTGG 2 cut(s) 654, 886
BseXI GCAGC 3 cut(s) 114, 886, 1037
BshFI GGCC 2 cut(s) 435, 1004
BshNI GGYRCC 2 cut(s) 802, 1034
BsiHKAI GWGCWC 2 cut(s) 952, 958
BsiHKCI CYCGRG 1 cut(s) 951
BslI CCNNNNNNNGG 2 cut(s) 322, 834
BsmAI GTCTC 1 cut(s) 739
BsmBI CGTCTC 1 cut(s) 739
BsmI GAATGC 1 cut(s) 999
BsnI GGCC 2 cut(s) 435, 1004
BsoBI CYCGRG 1 cut(s) 951
Bsp1286I GDGCHC 2 cut(s) 952, 958
Bsp143I GATC 4 cut(s) 70, 180, 351, 969
Bsp19I CCATGG 2 cut(s) 346, 975
BspACI CCGC 3 cut(s) 6, 436, 985
BspANI GGCC 2 cut(s) 435, 1004
BspCNI CTCAG 2 cut(s) 735, 806
BspLI GGNNCC 3 cut(s) 375, 804, 1036
BspPI GGATC 2 cut(s) 175, 359
BspT107I GGYRCC 2 cut(s) 802, 1034
BsrDI GCAATG 1 cut(s) 148
BsrI ACTGG 2 cut(s) 654, 886
BssECI CCNNGG 5 cut(s) 27, 56, 346, 975, 999
BssMI GATC 4 cut(s) 70, 180, 351, 969
BssNI GRCGYC 2 cut(s) 803, 1035
BssT1I CCWWGG 4 cut(s) 27, 56, 346, 975
Bst2UI CCWGG 1 cut(s) 1001
Bst4CI ACNGT 2 cut(s) 620, 811
BstACI GRCGYC 2 cut(s) 803, 1035
BstAPI GCANNNNNTGC 1 cut(s) 899
BstBAI YACGTR 1 cut(s) 451
BstDEI CTNAG 2 cut(s) 743, 793
BstDSI CCRYGG 2 cut(s) 346, 975
BstEII GGTNACC 1 cut(s) 881
BstENI CCTNNNNNAGG 1 cut(s) 320
BstF5I GGATG 2 cut(s) 166, 346
BstH2I RGCGCY 3 cut(s) 806, 933, 1038
BstHHI GCGC 3 cut(s) 805, 932, 1037
BstKTI GATC 4 cut(s) 73, 183, 354, 972
BstMAI GTCTC 1 cut(s) 739
BstMBI GATC 4 cut(s) 70, 180, 351, 969
BstMWI GCNNNNNNNGC 3 cut(s) 823, 899, 1034
BstNI CCWGG 1 cut(s) 1001
BstNSI RCATGY 2 cut(s) 137, 194
BstPAI GACNNNNGTC 1 cut(s) 751
BstPI GGTNACC 1 cut(s) 881
BstSCI CCNGG 1 cut(s) 999
BstSNI TACGTA 1 cut(s) 451
BstV1I GCAGC 3 cut(s) 114, 886, 1037
BstX2I RGATCY 2 cut(s) 180, 351
BstXI CCANNNNNNTGG 1 cut(s) 337
BstYI RGATCY 2 cut(s) 180, 351
BsuRI GGCC 2 cut(s) 435, 1004
BtgI CCRYGG 2 cut(s) 346, 975
BtgZI GCGATG 1 cut(s) 21
BtsCI GGATG 2 cut(s) 166, 346
BtsI GCAGTG 1 cut(s) 487
BtsIMutI CAGTG 2 cut(s) 487, 816
CaiI CAGNNNCTG 1 cut(s) 899
CfoI GCGC 3 cut(s) 805, 932, 1037
CseI GACGC 1 cut(s) 41
Csp6I GTAC 2 cut(s) 98, 465
CspCI CAANNNNNGTGG 2 cut(s) 574, 609
CviAII CATG 7 cut(s) 134, 191, 347, 508, 549, 976, 1015
CviJI RGCY 9 cut(s) 110, 127, 376, 435, 520, 950, 956, 1004, 1028
CviKI_1 RGCY 9 cut(s) 110, 127, 376, 435, 520, 950, 956, 1004, 1028
CviQI GTAC 2 cut(s) 98, 465
DdeI CTNAG 2 cut(s) 743, 793
DinI GGCGCC 2 cut(s) 804, 1036
DpnI GATC 4 cut(s) 72, 182, 353, 971
DpnII GATC 4 cut(s) 70, 180, 351, 969
DriI GACNNNNNGTC 1 cut(s) 835
Eam1105I GACNNNNNGTC 1 cut(s) 835
Ecl136II GAGCTC 2 cut(s) 950, 956
Eco105I TACGTA 1 cut(s) 451
Eco130I CCWWGG 4 cut(s) 27, 56, 346, 975
Eco24I GRGCYC 2 cut(s) 952, 958
Eco53kI GAGCTC 2 cut(s) 950, 956
Eco57I CTGAAG 2 cut(s) 453, 627
Eco88I CYCGRG 1 cut(s) 951
Eco91I GGTNACC 1 cut(s) 881
EcoICRI GAGCTC 2 cut(s) 950, 956
EcoNI CCTNNNNNAGG 1 cut(s) 320
EcoO65I GGTNACC 1 cut(s) 881
EcoRI GAATTC 1 cut(s) 172
EcoRII CCWGG 1 cut(s) 999
EcoT14I CCWWGG 4 cut(s) 27, 56, 346, 975
EcoT38I GRGCYC 2 cut(s) 952, 958
EgeI GGCGCC 2 cut(s) 804, 1036
EheI GGCGCC 2 cut(s) 804, 1036
ErhI CCWWGG 4 cut(s) 27, 56, 346, 975
Esp3I CGTCTC 1 cut(s) 739
FaeI CATG 7 cut(s) 137, 194, 350, 511, 552, 979, 1018
FatI CATG 7 cut(s) 133, 190, 346, 507, 548, 975, 1014
FblI GTMKAC 1 cut(s) 1011
Fnu4HI GCNGC 4 cut(s) 128, 436, 900, 1026
FokI GGATG 2 cut(s) 173, 353
FriOI GRGCYC 2 cut(s) 952, 958
Fsp4HI GCNGC 4 cut(s) 128, 436, 900, 1026
FspBI CTAG 1 cut(s) 57
GlaI GCGC 3 cut(s) 804, 931, 1036
GluI GCNGC 4 cut(s) 128, 436, 900, 1026
HaeII RGCGCY 3 cut(s) 806, 933, 1038
HaeIII GGCC 2 cut(s) 435, 1004
HgaI GACGC 1 cut(s) 41
HhaI GCGC 3 cut(s) 805, 932, 1037
Hin1I GRCGYC 2 cut(s) 803, 1035
Hin1II CATG 7 cut(s) 137, 194, 350, 511, 552, 979, 1018
Hin6I GCGC 3 cut(s) 803, 930, 1035
HinP1I GCGC 3 cut(s) 803, 930, 1035
HincII GTYRAC 1 cut(s) 1012
HindII GTYRAC 1 cut(s) 1012
HinfI GANTC 2 cut(s) 19, 873
HphI GGTGA 3 cut(s) 305, 935, 991
Hpy166II GTNNAC 5 cut(s) 219, 260, 544, 872, 1012
Hpy188I TCNGA 5 cut(s) 75, 178, 403, 607, 744
Hpy188III TCNNGA 4 cut(s) 86, 117, 184, 990
Hpy8I GTNNAC 5 cut(s) 219, 260, 544, 872, 1012
Hpy99I CGWCG 4 cut(s) 783, 833, 881, 1013
HpyAV CCTTC 6 cut(s) 123, 279, 866, 953, 969, 1015
HpyCH4III ACNGT 2 cut(s) 620, 811
HpyCH4IV ACGT 2 cut(s) 450, 778
HpyCH4V TGCA 4 cut(s) 130, 226, 458, 893
HpyF10VI GCNNNNNNNGC 3 cut(s) 823, 899, 1034
HpyF3I CTNAG 2 cut(s) 743, 793
HpySE526I ACGT 2 cut(s) 450, 778
Hsp92I GRCGYC 2 cut(s) 803, 1035
Hsp92II CATG 7 cut(s) 137, 194, 350, 511, 552, 979, 1018
HspAI GCGC 3 cut(s) 803, 930, 1035
KasI GGCGCC 2 cut(s) 802, 1034
Kzo9I GATC 4 cut(s) 70, 180, 351, 969
LmnI GCTCC 3 cut(s) 115, 373, 961
Lsp1109I GCAGC 3 cut(s) 114, 886, 1037
LweI GCATC 1 cut(s) 44
MaeI CTAG 1 cut(s) 57
MaeII ACGT 2 cut(s) 450, 778
MaeIII GTNAC 3 cut(s) 356, 620, 881
MalI GATC 4 cut(s) 72, 182, 353, 971
MboI GATC 4 cut(s) 70, 180, 351, 969
MboII GAAGA 4 cut(s) 579, 620, 623, 851
MflI RGATCY 2 cut(s) 180, 351
MhlI GDGCHC 2 cut(s) 952, 958
MluCI AATT 7 cut(s) 76, 172, 273, 445, 485, 655, 677
Mly113I GGCGCC 2 cut(s) 803, 1035
MlyI GAGTC 1 cut(s) 867
MnlI CCTC 7 cut(s) 321, 361, 631, 744, 807, 828, 919
MseI TTAA 1 cut(s) 798
MslI CAYNNNNRTG 1 cut(s) 363
MspR9I CCNGG 1 cut(s) 1001
Mva1269I GAATGC 1 cut(s) 999
MvaI CCWGG 1 cut(s) 1001
MwoI GCNNNNNNNGC 3 cut(s) 823, 899, 1034
NarI GGCGCC 2 cut(s) 803, 1035
NcoI CCATGG 2 cut(s) 346, 975
NdeII GATC 4 cut(s) 70, 180, 351, 969
NlaIII CATG 7 cut(s) 137, 194, 350, 511, 552, 979, 1018
NlaIV GGNNCC 3 cut(s) 375, 804, 1036
NmeAIII GCCGAG 1 cut(s) 928
NmuCI GTSAC 1 cut(s) 356
NspI RCATGY 2 cut(s) 137, 194
OliI CACNNNNGTG 1 cut(s) 363
PaeR7I CTCGAG 1 cut(s) 951
PciI ACATGT 1 cut(s) 133
PctI GAATGC 1 cut(s) 999
PfeI GAWTC 1 cut(s) 19
PkrI GCNGC 4 cut(s) 129, 437, 901, 1027
PleI GAGTC 1 cut(s) 867
PluTI GGCGCC 2 cut(s) 806, 1038
PpsI GAGTC 1 cut(s) 867
Ppu21I YACGTR 1 cut(s) 451
PscI ACATGT 1 cut(s) 133
PshAI GACNNNNGTC 1 cut(s) 751
Psp124BI GAGCTC 2 cut(s) 952, 958
Psp6I CCWGG 1 cut(s) 999
PspEI GGTNACC 1 cut(s) 881
PspGI CCWGG 1 cut(s) 999
PspN4I GGNNCC 3 cut(s) 375, 804, 1036
PspXI VCTCGAGB 1 cut(s) 951
PsrI GAACNNNNNNTAC 2 cut(s) 457, 489
PstNI CAGNNNCTG 1 cut(s) 899
PsuI RGATCY 2 cut(s) 180, 351
RsaI GTAC 2 cut(s) 99, 466
RsaNI GTAC 2 cut(s) 98, 465
RseI CAYNNNNRTG 1 cut(s) 363
SacI GAGCTC 2 cut(s) 952, 958
SalI GTCGAC 1 cut(s) 1010
SaqAI TTAA 1 cut(s) 798
SatI GCNGC 4 cut(s) 128, 436, 900, 1026
Sau3AI GATC 4 cut(s) 70, 180, 351, 969
ScaI AGTACT 1 cut(s) 466
SchI GAGTC 1 cut(s) 867
ScrFI CCNGG 1 cut(s) 1001
SduI GDGCHC 2 cut(s) 952, 958
SfaNI GCATC 1 cut(s) 44
SfoI GGCGCC 2 cut(s) 804, 1036
Sfr274I CTCGAG 1 cut(s) 951
SlaI CTCGAG 1 cut(s) 951
SmiMI CAYNNNNRTG 1 cut(s) 363
SmlI CTYRAG 1 cut(s) 951
SmoI CTYRAG 1 cut(s) 951
SnaBI TACGTA 1 cut(s) 451
Sse9I AATT 7 cut(s) 76, 172, 273, 445, 485, 655, 677
SsiI CCGC 3 cut(s) 6, 436, 985
SspDI GGCGCC 2 cut(s) 802, 1034
SspI AATATT 1 cut(s) 306
SspMI CTAG 1 cut(s) 57
SstI GAGCTC 2 cut(s) 952, 958
StyD4I CCNGG 1 cut(s) 999
StyI CCWWGG 4 cut(s) 27, 56, 346, 975
TaaI ACNGT 2 cut(s) 620, 811
TaiI ACGT 2 cut(s) 453, 781
TasI AATT 7 cut(s) 76, 172, 273, 445, 485, 655, 677
TatI WGTACW 1 cut(s) 464
TauI GCSGC 1 cut(s) 438
TfiI GAWTC 1 cut(s) 19
Tru1I TTAA 1 cut(s) 798
Tru9I TTAA 1 cut(s) 798
TscAI CASTG 2 cut(s) 487, 816
TseFI GTSAC 1 cut(s) 356
TseI GCWGC 3 cut(s) 127, 899, 1025
Tsp45I GTSAC 1 cut(s) 356
TspDTI ATGAA 3 cut(s) 177, 293, 671
TspGWI ACGGA 1 cut(s) 763
TspRI CASTG 2 cut(s) 487, 816
XagI CCTNNNNNAGG 1 cut(s) 320
XapI RAATTY 1 cut(s) 172
XceI RCATGY 2 cut(s) 137, 194
XhoI CTCGAG 1 cut(s) 951
XmaJI CCTAGG 1 cut(s) 56
XmiI GTMKAC 1 cut(s) 1011
XspI CTAG 1 cut(s) 57
ZrmI AGTACT 1 cut(s) 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.