Carotenoid cleavage dioxygenase 7
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RPE65 | PF03055 | 3 - 213 | 8.3e-26 | Retinal pigment epithelial membrane protein |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 802, 1034 |
| AccI | GTMKAC | 1 cut(s) | 1011 |
| AciI | CCGC | 3 cut(s) | 6, 436, 985 |
| AclWI | GGATC | 2 cut(s) | 175, 359 |
| AcsI | RAATTY | 1 cut(s) | 172 |
| AcuI | CTGAAG | 2 cut(s) | 453, 627 |
| AcyI | GRCGYC | 2 cut(s) | 803, 1035 |
| AfaI | GTAC | 2 cut(s) | 99, 466 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 322, 834 |
| AflIII | ACRYGT | 1 cut(s) | 133 |
| AgsI | TTSAA | 6 cut(s) | 107, 273, 382, 531, 647, 914 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 835 |
| AjnI | CCWGG | 1 cut(s) | 999 |
| AleI | CACNNNNGTG | 1 cut(s) | 363 |
| AluBI | AGCT | 4 cut(s) | 110, 520, 950, 956 |
| AluI | AGCT | 4 cut(s) | 110, 520, 950, 956 |
| Alw21I | GWGCWC | 2 cut(s) | 952, 958 |
| Alw26I | GTCTC | 1 cut(s) | 739 |
| AlwI | GGATC | 2 cut(s) | 175, 359 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 899 |
| Ama87I | CYCGRG | 1 cut(s) | 951 |
| AoxI | GGCC | 2 cut(s) | 433, 1002 |
| ApeKI | GCWGC | 3 cut(s) | 127, 899, 1025 |
| ApoI | RAATTY | 1 cut(s) | 172 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 536, 568 |
| AspA2I | CCTAGG | 1 cut(s) | 56 |
| AspLEI | GCGC | 3 cut(s) | 805, 932, 1037 |
| AsuHPI | GGTGA | 3 cut(s) | 305, 935, 991 |
| AvaI | CYCGRG | 1 cut(s) | 951 |
| AvrII | CCTAGG | 1 cut(s) | 56 |
| BanI | GGYRCC | 2 cut(s) | 802, 1034 |
| BanII | GRGCYC | 2 cut(s) | 952, 958 |
| Bbv12I | GWGCWC | 2 cut(s) | 952, 958 |
| BbvI | GCAGC | 3 cut(s) | 114, 886, 1037 |
| BccI | CCATC | 2 cut(s) | 338, 1037 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 771, 805 |
| BciT130I | CCWGG | 1 cut(s) | 1001 |
| BcoDI | GTCTC | 1 cut(s) | 739 |
| BfaI | CTAG | 1 cut(s) | 57 |
| BfoI | RGCGCY | 3 cut(s) | 806, 933, 1038 |
| BisI | GCNGC | 4 cut(s) | 128, 436, 900, 1026 |
| BlnI | CCTAGG | 1 cut(s) | 56 |
| BlsI | GCNGC | 4 cut(s) | 129, 437, 901, 1027 |
| BmcAI | AGTACT | 1 cut(s) | 466 |
| Bme1390I | CCNGG | 1 cut(s) | 1001 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 835 |
| BmeT110I | CYCGRG | 1 cut(s) | 951 |
| BmiI | GGNNCC | 3 cut(s) | 375, 804, 1036 |
| BmrFI | CCNGG | 1 cut(s) | 1001 |
| BmsI | GCATC | 1 cut(s) | 44 |
| BoxI | GACNNNNGTC | 1 cut(s) | 751 |
| BsaAI | YACGTR | 1 cut(s) | 451 |
| BsaHI | GRCGYC | 2 cut(s) | 803, 1035 |
| BsaJI | CCNNGG | 5 cut(s) | 27, 56, 346, 975, 999 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 322, 834 |
| Bse1I | ACTGG | 2 cut(s) | 654, 886 |
| Bse3DI | GCAATG | 1 cut(s) | 148 |
| BseBI | CCWGG | 1 cut(s) | 1001 |
| BseDI | CCNNGG | 5 cut(s) | 27, 56, 346, 975, 999 |
| BseGI | GGATG | 2 cut(s) | 166, 346 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 322, 834 |
| BseMI | GCAATG | 1 cut(s) | 148 |
| BseMII | CTCAG | 2 cut(s) | 734, 807 |
| BseNI | ACTGG | 2 cut(s) | 654, 886 |
| BseXI | GCAGC | 3 cut(s) | 114, 886, 1037 |
| BshFI | GGCC | 2 cut(s) | 435, 1004 |
| BshNI | GGYRCC | 2 cut(s) | 802, 1034 |
| BsiHKAI | GWGCWC | 2 cut(s) | 952, 958 |
| BsiHKCI | CYCGRG | 1 cut(s) | 951 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 322, 834 |
| BsmAI | GTCTC | 1 cut(s) | 739 |
| BsmBI | CGTCTC | 1 cut(s) | 739 |
| BsmI | GAATGC | 1 cut(s) | 999 |
| BsnI | GGCC | 2 cut(s) | 435, 1004 |
| BsoBI | CYCGRG | 1 cut(s) | 951 |
| Bsp1286I | GDGCHC | 2 cut(s) | 952, 958 |
| Bsp143I | GATC | 4 cut(s) | 70, 180, 351, 969 |
| Bsp19I | CCATGG | 2 cut(s) | 346, 975 |
| BspACI | CCGC | 3 cut(s) | 6, 436, 985 |
| BspANI | GGCC | 2 cut(s) | 435, 1004 |
| BspCNI | CTCAG | 2 cut(s) | 735, 806 |
| BspLI | GGNNCC | 3 cut(s) | 375, 804, 1036 |
| BspPI | GGATC | 2 cut(s) | 175, 359 |
| BspT107I | GGYRCC | 2 cut(s) | 802, 1034 |
| BsrDI | GCAATG | 1 cut(s) | 148 |
| BsrI | ACTGG | 2 cut(s) | 654, 886 |
| BssECI | CCNNGG | 5 cut(s) | 27, 56, 346, 975, 999 |
| BssMI | GATC | 4 cut(s) | 70, 180, 351, 969 |
| BssNI | GRCGYC | 2 cut(s) | 803, 1035 |
| BssT1I | CCWWGG | 4 cut(s) | 27, 56, 346, 975 |
| Bst2UI | CCWGG | 1 cut(s) | 1001 |
| Bst4CI | ACNGT | 2 cut(s) | 620, 811 |
| BstACI | GRCGYC | 2 cut(s) | 803, 1035 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 899 |
| BstBAI | YACGTR | 1 cut(s) | 451 |
| BstDEI | CTNAG | 2 cut(s) | 743, 793 |
| BstDSI | CCRYGG | 2 cut(s) | 346, 975 |
| BstEII | GGTNACC | 1 cut(s) | 881 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 320 |
| BstF5I | GGATG | 2 cut(s) | 166, 346 |
| BstH2I | RGCGCY | 3 cut(s) | 806, 933, 1038 |
| BstHHI | GCGC | 3 cut(s) | 805, 932, 1037 |
| BstKTI | GATC | 4 cut(s) | 73, 183, 354, 972 |
| BstMAI | GTCTC | 1 cut(s) | 739 |
| BstMBI | GATC | 4 cut(s) | 70, 180, 351, 969 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 823, 899, 1034 |
| BstNI | CCWGG | 1 cut(s) | 1001 |
| BstNSI | RCATGY | 2 cut(s) | 137, 194 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 751 |
| BstPI | GGTNACC | 1 cut(s) | 881 |
| BstSCI | CCNGG | 1 cut(s) | 999 |
| BstSNI | TACGTA | 1 cut(s) | 451 |
| BstV1I | GCAGC | 3 cut(s) | 114, 886, 1037 |
| BstX2I | RGATCY | 2 cut(s) | 180, 351 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 337 |
| BstYI | RGATCY | 2 cut(s) | 180, 351 |
| BsuRI | GGCC | 2 cut(s) | 435, 1004 |
| BtgI | CCRYGG | 2 cut(s) | 346, 975 |
| BtgZI | GCGATG | 1 cut(s) | 21 |
| BtsCI | GGATG | 2 cut(s) | 166, 346 |
| BtsI | GCAGTG | 1 cut(s) | 487 |
| BtsIMutI | CAGTG | 2 cut(s) | 487, 816 |
| CaiI | CAGNNNCTG | 1 cut(s) | 899 |
| CfoI | GCGC | 3 cut(s) | 805, 932, 1037 |
| CseI | GACGC | 1 cut(s) | 41 |
| Csp6I | GTAC | 2 cut(s) | 98, 465 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 574, 609 |
| CviAII | CATG | 7 cut(s) | 134, 191, 347, 508, 549, 976, 1015 |
| CviJI | RGCY | 9 cut(s) | 110, 127, 376, 435, 520, 950, 956, 1004, 1028 |
| CviKI_1 | RGCY | 9 cut(s) | 110, 127, 376, 435, 520, 950, 956, 1004, 1028 |
| CviQI | GTAC | 2 cut(s) | 98, 465 |
| DdeI | CTNAG | 2 cut(s) | 743, 793 |
| DinI | GGCGCC | 2 cut(s) | 804, 1036 |
| DpnI | GATC | 4 cut(s) | 72, 182, 353, 971 |
| DpnII | GATC | 4 cut(s) | 70, 180, 351, 969 |
| DriI | GACNNNNNGTC | 1 cut(s) | 835 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 835 |
| Ecl136II | GAGCTC | 2 cut(s) | 950, 956 |
| Eco105I | TACGTA | 1 cut(s) | 451 |
| Eco130I | CCWWGG | 4 cut(s) | 27, 56, 346, 975 |
| Eco24I | GRGCYC | 2 cut(s) | 952, 958 |
| Eco53kI | GAGCTC | 2 cut(s) | 950, 956 |
| Eco57I | CTGAAG | 2 cut(s) | 453, 627 |
| Eco88I | CYCGRG | 1 cut(s) | 951 |
| Eco91I | GGTNACC | 1 cut(s) | 881 |
| EcoICRI | GAGCTC | 2 cut(s) | 950, 956 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 320 |
| EcoO65I | GGTNACC | 1 cut(s) | 881 |
| EcoRI | GAATTC | 1 cut(s) | 172 |
| EcoRII | CCWGG | 1 cut(s) | 999 |
| EcoT14I | CCWWGG | 4 cut(s) | 27, 56, 346, 975 |
| EcoT38I | GRGCYC | 2 cut(s) | 952, 958 |
| EgeI | GGCGCC | 2 cut(s) | 804, 1036 |
| EheI | GGCGCC | 2 cut(s) | 804, 1036 |
| ErhI | CCWWGG | 4 cut(s) | 27, 56, 346, 975 |
| Esp3I | CGTCTC | 1 cut(s) | 739 |
| FaeI | CATG | 7 cut(s) | 137, 194, 350, 511, 552, 979, 1018 |
| FatI | CATG | 7 cut(s) | 133, 190, 346, 507, 548, 975, 1014 |
| FblI | GTMKAC | 1 cut(s) | 1011 |
| Fnu4HI | GCNGC | 4 cut(s) | 128, 436, 900, 1026 |
| FokI | GGATG | 2 cut(s) | 173, 353 |
| FriOI | GRGCYC | 2 cut(s) | 952, 958 |
| Fsp4HI | GCNGC | 4 cut(s) | 128, 436, 900, 1026 |
| FspBI | CTAG | 1 cut(s) | 57 |
| GlaI | GCGC | 3 cut(s) | 804, 931, 1036 |
| GluI | GCNGC | 4 cut(s) | 128, 436, 900, 1026 |
| HaeII | RGCGCY | 3 cut(s) | 806, 933, 1038 |
| HaeIII | GGCC | 2 cut(s) | 435, 1004 |
| HgaI | GACGC | 1 cut(s) | 41 |
| HhaI | GCGC | 3 cut(s) | 805, 932, 1037 |
| Hin1I | GRCGYC | 2 cut(s) | 803, 1035 |
| Hin1II | CATG | 7 cut(s) | 137, 194, 350, 511, 552, 979, 1018 |
| Hin6I | GCGC | 3 cut(s) | 803, 930, 1035 |
| HinP1I | GCGC | 3 cut(s) | 803, 930, 1035 |
| HincII | GTYRAC | 1 cut(s) | 1012 |
| HindII | GTYRAC | 1 cut(s) | 1012 |
| HinfI | GANTC | 2 cut(s) | 19, 873 |
| HphI | GGTGA | 3 cut(s) | 305, 935, 991 |
| Hpy166II | GTNNAC | 5 cut(s) | 219, 260, 544, 872, 1012 |
| Hpy188I | TCNGA | 5 cut(s) | 75, 178, 403, 607, 744 |
| Hpy188III | TCNNGA | 4 cut(s) | 86, 117, 184, 990 |
| Hpy8I | GTNNAC | 5 cut(s) | 219, 260, 544, 872, 1012 |
| Hpy99I | CGWCG | 4 cut(s) | 783, 833, 881, 1013 |
| HpyAV | CCTTC | 6 cut(s) | 123, 279, 866, 953, 969, 1015 |
| HpyCH4III | ACNGT | 2 cut(s) | 620, 811 |
| HpyCH4IV | ACGT | 2 cut(s) | 450, 778 |
| HpyCH4V | TGCA | 4 cut(s) | 130, 226, 458, 893 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 823, 899, 1034 |
| HpyF3I | CTNAG | 2 cut(s) | 743, 793 |
| HpySE526I | ACGT | 2 cut(s) | 450, 778 |
| Hsp92I | GRCGYC | 2 cut(s) | 803, 1035 |
| Hsp92II | CATG | 7 cut(s) | 137, 194, 350, 511, 552, 979, 1018 |
| HspAI | GCGC | 3 cut(s) | 803, 930, 1035 |
| KasI | GGCGCC | 2 cut(s) | 802, 1034 |
| Kzo9I | GATC | 4 cut(s) | 70, 180, 351, 969 |
| LmnI | GCTCC | 3 cut(s) | 115, 373, 961 |
| Lsp1109I | GCAGC | 3 cut(s) | 114, 886, 1037 |
| LweI | GCATC | 1 cut(s) | 44 |
| MaeI | CTAG | 1 cut(s) | 57 |
| MaeII | ACGT | 2 cut(s) | 450, 778 |
| MaeIII | GTNAC | 3 cut(s) | 356, 620, 881 |
| MalI | GATC | 4 cut(s) | 72, 182, 353, 971 |
| MboI | GATC | 4 cut(s) | 70, 180, 351, 969 |
| MboII | GAAGA | 4 cut(s) | 579, 620, 623, 851 |
| MflI | RGATCY | 2 cut(s) | 180, 351 |
| MhlI | GDGCHC | 2 cut(s) | 952, 958 |
| MluCI | AATT | 7 cut(s) | 76, 172, 273, 445, 485, 655, 677 |
| Mly113I | GGCGCC | 2 cut(s) | 803, 1035 |
| MlyI | GAGTC | 1 cut(s) | 867 |
| MnlI | CCTC | 7 cut(s) | 321, 361, 631, 744, 807, 828, 919 |
| MseI | TTAA | 1 cut(s) | 798 |
| MslI | CAYNNNNRTG | 1 cut(s) | 363 |
| MspR9I | CCNGG | 1 cut(s) | 1001 |
| Mva1269I | GAATGC | 1 cut(s) | 999 |
| MvaI | CCWGG | 1 cut(s) | 1001 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 823, 899, 1034 |
| NarI | GGCGCC | 2 cut(s) | 803, 1035 |
| NcoI | CCATGG | 2 cut(s) | 346, 975 |
| NdeII | GATC | 4 cut(s) | 70, 180, 351, 969 |
| NlaIII | CATG | 7 cut(s) | 137, 194, 350, 511, 552, 979, 1018 |
| NlaIV | GGNNCC | 3 cut(s) | 375, 804, 1036 |
| NmeAIII | GCCGAG | 1 cut(s) | 928 |
| NmuCI | GTSAC | 1 cut(s) | 356 |
| NspI | RCATGY | 2 cut(s) | 137, 194 |
| OliI | CACNNNNGTG | 1 cut(s) | 363 |
| PaeR7I | CTCGAG | 1 cut(s) | 951 |
| PciI | ACATGT | 1 cut(s) | 133 |
| PctI | GAATGC | 1 cut(s) | 999 |
| PfeI | GAWTC | 1 cut(s) | 19 |
| PkrI | GCNGC | 4 cut(s) | 129, 437, 901, 1027 |
| PleI | GAGTC | 1 cut(s) | 867 |
| PluTI | GGCGCC | 2 cut(s) | 806, 1038 |
| PpsI | GAGTC | 1 cut(s) | 867 |
| Ppu21I | YACGTR | 1 cut(s) | 451 |
| PscI | ACATGT | 1 cut(s) | 133 |
| PshAI | GACNNNNGTC | 1 cut(s) | 751 |
| Psp124BI | GAGCTC | 2 cut(s) | 952, 958 |
| Psp6I | CCWGG | 1 cut(s) | 999 |
| PspEI | GGTNACC | 1 cut(s) | 881 |
| PspGI | CCWGG | 1 cut(s) | 999 |
| PspN4I | GGNNCC | 3 cut(s) | 375, 804, 1036 |
| PspXI | VCTCGAGB | 1 cut(s) | 951 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 457, 489 |
| PstNI | CAGNNNCTG | 1 cut(s) | 899 |
| PsuI | RGATCY | 2 cut(s) | 180, 351 |
| RsaI | GTAC | 2 cut(s) | 99, 466 |
| RsaNI | GTAC | 2 cut(s) | 98, 465 |
| RseI | CAYNNNNRTG | 1 cut(s) | 363 |
| SacI | GAGCTC | 2 cut(s) | 952, 958 |
| SalI | GTCGAC | 1 cut(s) | 1010 |
| SaqAI | TTAA | 1 cut(s) | 798 |
| SatI | GCNGC | 4 cut(s) | 128, 436, 900, 1026 |
| Sau3AI | GATC | 4 cut(s) | 70, 180, 351, 969 |
| ScaI | AGTACT | 1 cut(s) | 466 |
| SchI | GAGTC | 1 cut(s) | 867 |
| ScrFI | CCNGG | 1 cut(s) | 1001 |
| SduI | GDGCHC | 2 cut(s) | 952, 958 |
| SfaNI | GCATC | 1 cut(s) | 44 |
| SfoI | GGCGCC | 2 cut(s) | 804, 1036 |
| Sfr274I | CTCGAG | 1 cut(s) | 951 |
| SlaI | CTCGAG | 1 cut(s) | 951 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 363 |
| SmlI | CTYRAG | 1 cut(s) | 951 |
| SmoI | CTYRAG | 1 cut(s) | 951 |
| SnaBI | TACGTA | 1 cut(s) | 451 |
| Sse9I | AATT | 7 cut(s) | 76, 172, 273, 445, 485, 655, 677 |
| SsiI | CCGC | 3 cut(s) | 6, 436, 985 |
| SspDI | GGCGCC | 2 cut(s) | 802, 1034 |
| SspI | AATATT | 1 cut(s) | 306 |
| SspMI | CTAG | 1 cut(s) | 57 |
| SstI | GAGCTC | 2 cut(s) | 952, 958 |
| StyD4I | CCNGG | 1 cut(s) | 999 |
| StyI | CCWWGG | 4 cut(s) | 27, 56, 346, 975 |
| TaaI | ACNGT | 2 cut(s) | 620, 811 |
| TaiI | ACGT | 2 cut(s) | 453, 781 |
| TasI | AATT | 7 cut(s) | 76, 172, 273, 445, 485, 655, 677 |
| TatI | WGTACW | 1 cut(s) | 464 |
| TauI | GCSGC | 1 cut(s) | 438 |
| TfiI | GAWTC | 1 cut(s) | 19 |
| Tru1I | TTAA | 1 cut(s) | 798 |
| Tru9I | TTAA | 1 cut(s) | 798 |
| TscAI | CASTG | 2 cut(s) | 487, 816 |
| TseFI | GTSAC | 1 cut(s) | 356 |
| TseI | GCWGC | 3 cut(s) | 127, 899, 1025 |
| Tsp45I | GTSAC | 1 cut(s) | 356 |
| TspDTI | ATGAA | 3 cut(s) | 177, 293, 671 |
| TspGWI | ACGGA | 1 cut(s) | 763 |
| TspRI | CASTG | 2 cut(s) | 487, 816 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 320 |
| XapI | RAATTY | 1 cut(s) | 172 |
| XceI | RCATGY | 2 cut(s) | 137, 194 |
| XhoI | CTCGAG | 1 cut(s) | 951 |
| XmaJI | CCTAGG | 1 cut(s) | 56 |
| XmiI | GTMKAC | 1 cut(s) | 1011 |
| XspI | CTAG | 1 cut(s) | 57 |
| ZrmI | AGTACT | 1 cut(s) | 466 |